BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470399
Length=1321
Score E
Sequences producing significant alignments: (Bits) Value
AT1G04230.1 | Symbols: | Protein of unknown function (DUF2361)... 1999 0.0
> AT1G04230.1 | Symbols: | Protein of unknown function (DUF2361)
| chr1:1125518-1128168 FORWARD LENGTH=1376
Length=1376
Score = 1999 bits (1082), Expect = 0.0
Identities = 1264/1345 (94%), Gaps = 40/1345 (3%)
Strand=Plus/Plus
Query 1 TCATCACTTGGGCGATGGCGCACGGCGGATATGCGAAGCGGAGAGTTGCAGAGCGGAAGA 60
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 45 TCATCACTTCGGCGATGGCGCACGGCGGATATGCGAGGCGGAGAGTTGCAGAGCGGAAGA 104
Query 61 CGACGGCAGGAACTAGTCGGAGATCTAAAGGATTACGCGTGGAGAAGAAACCGAAGAATT 120
||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||
Sbjct 105 CGACGGCAGGAACTAGTCGGAGATCGAAAGGATTGCGCGTGGAGAAAAAACCGAAGAATT 164
Query 121 CCTCTCTCAAGAATCAAATTCGTTCCATCGGTCGCATGATTCGTAAAGACCTTCCTCCTG 180
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 165 CCTCTCTCAAGAATCAAATTCGTTCCATCGGTCGCATGATTCGTAAAGATCTTCCTCCTG 224
Query 181 AAGTAAGAGAGGCTCTAGAAAAGAAGTTGGATGATCTGAAGAAGCAGCAAGATATCCATA 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 225 AAGTAAGAGAGGCTCTAGAAAAGAAGTTGGATGATCTGAAGAAGCAGCAAGATATCCATT 284
Query 241 TCCGTCTTGCTGTTGAACGTAAAATCTTCCTAAGGAACAGAAAGGTCAGATTCTTTGAGC 300
||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 285 TCCGTCTTGCTTTTGAACGTAAAATCTTCCTAAGGAACAGAAAGGTCAGATTCTTCGAGC 344
Query 301 GGAGAAAGATCGAAAGGAGTATAAGACGTCTCGAGAAGCTACAACGAAGTACATCTGGTG 360
|||||||||| |||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 345 GGAGAAAGATTGAAAGGAGTATAAGACGTCTCGAGAAGCTACATCGGAGTACATCTGGTG 404
Query 361 GTCATGTGCAAGATGCAGAAATTGGTGGGCAACTCAATAAACTCAAAGAAGACCTTGAAT 420
|| ||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct 405 GTTATGTGCAAGATGCAGAAATAGGTGGGCAACTCAATAGACTCAAAGAAGACCTTGAAT 464
Query 421 ATGTTAGGTTCTTCCCCAAGAATGAGAAGTATGTATCGCTATTTAGTGGAGGTGATGATT 480
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 465 ATGTTAGGTTCTTCCCCAAGAATGAGAAGTATGTATCGCTATTTAGTGGATCTGATGATT 524
Query 481 TACAAGTATCTGAGCGGAGAAGTAAATTGCGGAAGCAAATCAAAGCCAATATAATTGTTG 540
||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||
Sbjct 525 TACAAGTATCTGAGCGGAGAAGTAAATTGCGGAAGCAAATCAAAGCCAACATAATTTTTG 584
Query 541 CTGCTGCCAGTGGGAAAGAGTTGGAAGAGACAGGGAGCGAAGATGATGCTCTTTTGGACC 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 585 CTGCTGCCAGTGGGAAAGAGTTGGAAGAGACAGGGAGCGAAGATGATGCTCTTTTGGACC 644
Query 601 TGAGTGACGATGACTTCTTTGTCAACGGAAGTTCAAGTGACGAAGCAGATGCGGATGATG 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 645 TGAGTGACGATGACTTCTTTGTCAACGGAAGTTCAAGTGACGAAGCAGATGCGGATGATG 704
Query 661 AGTGGACTGATAAAAGCACAAAAGAGCCGGTTTCTAGTGCTTTTGGCAGAGCAACATCGA 720
|||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 705 AGTGGACTGATAAAAGCACAAAAGAGCCGGTTTCTAGTGCTTCTGGTAGAGCAACATCGA 764
Query 721 GCATGTCTAGTGACGAAAGAAATCAGAAGCCATACACTACTAGGGTTTTAATGCCACCAC 780
||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 765 GCATGTCCAGTGACGAAAGAAATCAGAAGCCATACTCTACTAGGGTTTTAATGCCACCAC 824
Query 781 CACGGTCAAGGTTTGCATCAACATCTCGTCAGTATTCATCTCTGAAGAGGAATGAGATAC 840
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 825 CACGGTCAAGGTTTGCATCAACATCTCGTCAGTATTCATCTGTGAAGAGGAATGAGATAC 884
Query 841 CTTCCTCCAGCAACACTTCACATAGAAGAAGCCAGTCTTCACATGCTGCCACAAGTTCGC 900
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 885 CTTCCTCCAGCAACACTTCACATAGAAGAAGCCAGTCTTCACATGCTGCCACTAGTTCGC 944
Query 901 ATACAAGTCAAAGTAGCAACTTGAGTTCTAATTCTGATGCTCACAAACCCAAGAGGAAGA 960
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 945 ATACAAGTCAGAGTAGCAACTTGAGTTCTAATTCTGATGCTCACAAACCCAAGAGGAAGA 1004
Query 961 GAAGGCCTAAGAAGAGGAAGCAACAGGTGAGTCCCTCTTGAGCGTGAACGGGGTCTCTCC 1020
||||||||||||||| ||||| ||||| | | || | || || |||||||
Sbjct 1005 GAAGGCCTAAGAAGAAGAAGCTACAGGCG--T-------GAAC---AA-GG--TCTCTCC 1049
Query 1021 CGCCATGTCTGAGAAAACGAAGAAGCTCGTAACACAGTTCATCAATTCCTAAAGCTTCAC 1080
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1050 CGCCATGTCTGAGAAAACGAAGAAGCTCGTAACACAGTTCATCAATTCCAAAAGCTTCAC 1109
Query 1081 -CAAGTACTACGGCCTGTCTAGTCTTACATCTTCTGATTGGATCTAATTCGTATATATAT 1139
|| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1110 TCAT-TACTACGGCCTGTCTAGTCTTACATCTTCTGATTGGATCTAATGCGTATATATAT 1168
Query 1140 GTTGCCATGAAAGCAGAGAGATAGGTTTCTGTTGTTTTTGGCTGATGAAATGAACCCTAA 1199
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 1169 GTTGCCATGAAAGCAGAGAGGTAGGTGTCTGTTGTTTTTGGCTGATGAAATGAACCCTAA 1228
Query 1200 GCTTTGGGCAAAACGTATTTCTCATATAAG-t---tttttttttt----C-A--G----- 1243
|||||||||||||||||||||||||||||| | |||||||||| | | |
Sbjct 1229 GCTTTGGGCAAAACGTATTTCTCATATAAGATAAGTTTTTTTTTTGTTTCTATTGATTTA 1288
Query 1244 -GT-C--G--G-CTTTGATCGAATTGAATCAATTAATGGGAGTGATCCAACGTAGACCAT 1296
|| | | | |||||||||||||| || ||||||||||||| ||||||| | ||||||
Sbjct 1289 TGTTCATGTTGGCTTTGATCGAATTGTATTAATTAATGGGAGTAATCCAACCTCGACCAT 1348
Query 1297 CAATAATATGATCTAAGAACTTGTG 1321
||||||||||||||||||||| |||
Sbjct 1349 CAATAATATGATCTAAGAACTAGTG 1373
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65009705775
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5