BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470401
Length=1037
Score E
Sequences producing significant alignments: (Bits) Value
AT1G04250.1 | Symbols: AXR3, IAA17 | AUX/IAA transcriptional re... 1672 0.0
AT3G04730.1 | Symbols: IAA16 | indoleacetic acid-induced protei... 73.1 5e-12
> AT1G04250.1 | Symbols: AXR3, IAA17 | AUX/IAA transcriptional
regulator family protein | chr1:1136258-1138613 FORWARD LENGTH=1087
Length=1087
Score = 1672 bits (905), Expect = 0.0
Identities = 1004/1050 (96%), Gaps = 14/1050 (1%)
Strand=Plus/Plus
Query 1 AGACAGAGATATAATACAGACTCATATCACTTTGTATTATTTGAGTGTTTTTATAAAACC 60
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1 AGACAGAGATATAATACAGACTCATCTCACTTTGTATTATTTGAGTGTTTTTATAAAACC 60
Query 61 ATTTTTCCATTTTCCTCATCACCTTCCC-A-aagaag-a-a--gaag-agaagaaagTTT 113
|||||||||| ||||||||||||||||| | |||||| | | ||| ||||||||| ||
Sbjct 61 ATTTTTCCATCTTCCTCATCACCTTCCCAAGAAGAAGAACACCAAAGAAGAAGAAAGGTT 120
Query 114 AATAATGATGGGCAGTGTCGAGCTGAATCTGAAGGAGACTGAACTGTGTCTTGGTCTTCC 173
|||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct 121 AATAATGATGGGCAGTGTCGAGCTGAATCTGAGGGAGACTGAGCTGTGTCTTGGTCTTCC 180
Query 174 CGGTGGAGATACGGTGGCTCCGGTAACCGGAAACAAGAGAGGGTTCTCAGAGACGGTTGA 233
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CGGTGGAGATACAGTGGCTCCGGTAACCGGAAACAAGAGAGGGTTCTCAGAGACGGTTGA 240
Query 234 TCTGAAGCTGAATCTTAACAATGAGCCTGAAAACAAGGAAGGGTCTACGACTCATGACGT 293
||||||||| ||||| || |||||||||| |||||||||||| |||||||||||||||||
Sbjct 241 TCTGAAGCTAAATCTGAATAATGAGCCTGCAAACAAGGAAGGATCTACGACTCATGACGT 300
Query 294 CGTGACTTTTGATTCCAAGGAGAAGAGTTCTTGTCCCAAAGATCCAGCCAAGCCTCCTTC 353
|||||||||||||||||||||||||||| ||||||| |||||||||||||| ||||| |
Sbjct 301 CGTGACTTTTGATTCCAAGGAGAAGAGTGCTTGTCCTAAAGATCCAGCCAAACCTCCGGC 360
Query 354 CAAGGCACAAGTTGTGGGATGGCCACCGGTGAGATCATACCGGAAGAACGTGATGGTTTC 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 CAAGGCACAAGTTGTGGGATGGCCACCGGTGAGATCATACCGGAAGAACGTGATGGTTTC 420
Query 414 GTGCCAAAAATCAAGCGGTGGCCCGGAGGCGGCGGCGTTCGTGAAGGTGTCAATGGACGG 473
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 421 CTGCCAAAAATCAAGCGGTGGCCCGGAGGCGGCGGCGTTCGTGAAGGTATCAATGGACGG 480
Query 474 AGCACCGTACTTGAGGAAAGTAGATTTGAGGATGTATAAAAGCTACGACGAGCTCTCTAA 533
||||||||||||||||||| | |||||||||||||||||||||||||| ||||| |||||
Sbjct 481 AGCACCGTACTTGAGGAAAATCGATTTGAGGATGTATAAAAGCTACGATGAGCTTTCTAA 540
Query 534 TGCTTTGTCCAACATGTTCAGCTCTTTTACCATGGGAAAACATGGAGGAGAAGAAGGAAT 593
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 541 TGCTTTGTCCAACATGTTCAGCTCTTTTACCATGGGCAAACATGGAGGAGAAGAAGGAAT 600
Query 594 GATAGACTTCATGAATGAGAGGAAATTGATGGATTTAGTGAATAGTTGGGACTATGTTCC 653
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 601 GATAGACTTCATGAATGAGAGGAAATTGATGGATTTGGTGAATAGCTGGGACTATGTTCC 660
Query 654 CTCTTATGAAGACAAAGACGGTGATTGGATGCTCGTCGGCGACGTTCCTTGGCCAATGTT 713
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 CTCTTATGAAGACAAAGACGGTGATTGGATGCTCGTCGGCGACGTTCCTTGGCCAATGTT 720
Query 714 CGTTGATACATGCAAGCGTTTACGTCTCATGAAAGGATCTGATGCCATTGGGCTCGCACC 773
||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||
Sbjct 721 CGTCGATACATGCAAGCGTTTACGTCTCATGAAAGGATCGGATGCCATTGGTCTCGCTCC 780
Query 774 GAGGGCGATGGAGAAGTGCAAGAGCAGAGCTTGAAGTC--A--AAAAGGATAAGTGGTAA 829
|||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |
Sbjct 781 GAGGGCGATGGAGAAGTGCAAGAGCAGAGCTTGAAGTCAAATTAAAAGGATAAGTGGT-A 839
Query 830 T-GATTATATATTTGATTAACACATTGATTGGTGTTAATTG-ttttttttttCTTACGAT 887
| ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 840 TCGATTATATATTTGATTAACACATTGATTGGTGTTAATTGCTCTTTTTTTTCTTACGAT 899
Query 888 GAAATACATTGTTCAGTTTCTTTTGATTGTCTGTGTTTTGATCTGGATTTGGTATGTAGA 947
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 GAAATACATTGTTCAGTTTCTTTTGATTGTCTGTGTTTTGATCTGGATTTGGTATGTAGA 959
Query 948 TATAGTTTGTATGCTATTATGTGTAATGAACTTAAGTTAAATATTTGAGACATTTGTAAT 1007
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 TATAGTTTGTATGCTATTATGTGTAATGAACTTAAGTTAAATATTTGAGACATTTGTAAT 1019
Query 1008 GGAAAATGTGTAATAATTTGAACATCTTAT 1037
|||||||||||||||||||||||||| |||
Sbjct 1020 GGAAAATGTGTAATAATTTGAACATCCTAT 1049
> AT3G04730.1 | Symbols: IAA16 | indoleacetic acid-induced protein
16 | chr3:1288612-1290602 REVERSE LENGTH=1279
Length=1279
Score = 73.1 bits (39), Expect = 5e-12
Identities = 62/72 (86%), Gaps = 5/72 (7%)
Strand=Plus/Plus
Query 353 CCAAGGCACAAGTTGTGGGATGGCCACCGGTGA-GATCATACCGGAAGAACGTGATGGTT 411
||||||||||||||||||||||||||||||| | |||| | ||| |||||||| ||| |
Sbjct 387 CCAAGGCACAAGTTGTGGGATGGCCACCGGT-ACGATCTTTCCGCAAGAACGTCATG-TC 444
Query 412 TCGTGCCAAAAA 423
|| ||||||||
Sbjct 445 -CG-GCCAAAAA 454
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50836956764
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5