BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470402
Length=680
Score E
Sequences producing significant alignments: (Bits) Value
AT1G04260.1 | Symbols: MPI7, MPIP7, PRA1.D | CAMV movement prot... 981 0.0
> AT1G04260.1 | Symbols: MPI7, MPIP7, PRA1.D | CAMV movement protein
interacting protein 7 | chr1:1140528-1141365 REVERSE LENGTH=838
Length=838
Score = 981 bits (531), Expect = 0.0
Identities = 629/673 (93%), Gaps = 19/673 (3%)
Strand=Plus/Plus
Query 1 TTGTTCCTGAGAATTTCTAGGGTTTCTGAAATCCAGGAGAGATCCAATC-GCAATGGCTA 59
||||||||||||| ||||||||||||||||||| ||||||||||||||| |||||||| |
Sbjct 16 TTGTTCCTGAGAAATTCTAGGGTTTCTGAAATCGAGGAGAGATCCAATCGGCAATGGCGA 75
Query 60 ATCAAGTGATCACCGGAATCAAGGAAACAGCTCAATCGATTACCGGCGCGGCTCGTCCAT 119
|||||||||||||||||||||| ||||||||||| || ||||| || |||||||||||||
Sbjct 76 ATCAAGTGATCACCGGAATCAAAGAAACAGCTCAGTCAATTACTGGAGCGGCTCGTCCAT 135
Query 120 GGGGCGATTTCCTCGATCTTTCCGCCTTCAGCGTT-CCTTCCTCCATCGCCGATGCCACA 178
|||||||||||||||||||||||||||||||| || |||||||||||||||||||| |||
Sbjct 136 GGGGCGATTTCCTCGATCTTTCCGCCTTCAGC-TTCCCTTCCTCCATCGCCGATGCAACA 194
Query 179 ACTCGCGTAACTCAGAACCTGACTCACTTCCGCATCAACTACAGTATCATTCTCTCAATC 238
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 195 ACTCGCGTAACTCAGAACCTGACTCACTTCCGCATCAACTACAGTATCATTCTCTCTATC 254
Query 239 CTCCTAGGTCTAACCCTAATCACACGTCCCATCGCCATCCTCGCGTTTATCGCCGTTGGC 298
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 255 CTCCTAGGTCTAACCCTAATCACACGTCCAATCGCCATCCTCGCGTTTATAGCCGTTGGC 314
Query 299 TTAGCGTGGTTCTTCCTCTATTTCGCTCGCGAGGAGCCACTCACGATCTTCGGATTCACT 358
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 315 TTAGCTTGGTTCTTCCTCTACTTCGCTCGCGAGGAGCCACTCACGATCTTCGGATTCACT 374
Query 359 ATTGACGACGGAATCGTGGCTGTGCTTCTCATCGGTCTTTCGATTGGGTCGCTAGTTACC 418
||||| ||||| ||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 375 ATTGATGACGGCATCGTCGCTGTGCTTCTCATTGGTCTTTCGATTGGGTCGCTAGTTACC 434
Query 419 ACCGGAGTTTGGCTTAGGGCTCTCACCACCGTTGGATTTGGTGTTCTGGTTTTGATCTTA 478
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 435 ACCGGAGTTTGGCTCAGAGCTCTCACCACCGTTGGATTTGGTGTTCTGGTTTTGATCTTA 494
Query 479 CACGCTGCGTTGAGAGGAACGGATGATCTTGTGAGTGACGATCTGGAATCACCTTATGGA 538
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 495 CACGCTGCGTTAAGAGGAACGGATGATCTTGTGAGTGACGATCTGGAATCACCTTATGGA 554
Query 539 CCGATGCTCTCTACC---GACGG------CG-C--T-C--GTGGTGATTACAGTGGAATC 583
||||||||||||||| | ||| || | | | ||||||||||||||||||||
Sbjct 555 CCGATGCTCTCTACCTCTGGCGGTGGTAACGACGGTGCTCGTGGTGATTACAGTGGAATC 614
Query 584 TGATCAACACGATTTGATAATGGAATTTGGGGATTTAGGGTTTTGTTGTGTTGTAAATTG 643
|||||||||||||||||||||| | |||||||||||||||||||||||| ||||||||||
Sbjct 615 TGATCAACACGATTTGATAATG-AGTTTGGGGATTTAGGGTTTTGTTGTTTTGTAAATTG 673
Query 644 TCATTGTTTCTTT 656
||||||||| |||
Sbjct 674 TCATTGTTTGTTT 686
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32903366285
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5