BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470404
Length=729
Score E
Sequences producing significant alignments: (Bits) Value
AT1G04270.1 | Symbols: RPS15 | cytosolic ribosomal protein S15 ... 1157 0.0
AT5G09500.1 | Symbols: | Ribosomal protein S19 family protein ... 479 2e-134
AT5G43640.1 | Symbols: | Ribosomal protein S19 family protein ... 455 3e-127
> AT1G04270.1 | Symbols: RPS15 | cytosolic ribosomal protein S15
| chr1:1141604-1143053 REVERSE LENGTH=800
Length=800
Score = 1157 bits (626), Expect = 0.0
Identities = 702/737 (95%), Gaps = 11/737 (1%)
Strand=Plus/Plus
Query 1 TATTTTTCTCTTGCAAAGA-C-CTCAGCAGCC-A--ACAGTTATC-AAGCTTAAGCCGTT 54
||||||||||||||||||| | |||||||||| | ||||||||| ||||||||||||||
Sbjct 2 TATTTTTCTCTTGCAAAGACCTCTCAGCAGCCAACGACAGTTATCAAAGCTTAAGCCGTT 61
Query 55 TTAGGGTTTTATCCTTTTGCTGAGATCCAATCATGGCGGATGTTGAACCAGAGGTTGCTG 114
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 62 TTAGGGTTTTATCCTTTTGCTGAGATCCAATCATGGCGGATGTTGAACCAGAGGTTGCTG 121
Query 115 CTGCTGGAGTGCCAAAGAAGAGGACGTTTAAGAAGTTTGCCTTCAGAGGAGTTGATCTCG 174
|||||||||| || ||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 122 CTGCTGGAGTTCCCAAGAAGAGGACGTTTAAGAAGTTTGCCTTCAAAGGAGTTGATCTCG 181
Query 175 ATGCTCTTCTTGACATGTCTACTGATGATCTTGTCAAGCTCTTCTCTTCTCGTATTCGCA 234
|||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 182 ATGCTCTTCTCGATATGTCTACTGATGATCTTGTCAAGCTCTTCTCTTCTCGTATTCGTA 241
Query 235 GAAGGTTCTCTAGAGGTTTGACGAGGAAGCCAATGGCTCTGATTAAGAAGCTGAGGAAAG 294
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 242 GAAGGTTCTCTAGAGGTTTGACAAGGAAGCCAATGGCTCTGATTAAGAAGCTGAGGAAAG 301
Query 295 CGAAAAGGGAGGCACCACAAGGTGAGAAGCCAGAACCTGTGAGAACCCACTTGAGGAACA 354
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 302 CGAAAAGGGAGGCACCACAAGGTGAGAAGCCAGAACCAGTGAGAACCCACTTGAGGAACA 361
Query 355 TGGTCATTGTCCCTGAGATGATTGGAAGCATCATTGGAGTTTACAATGGTAAGACTTTCA 414
|| |||| |||||||| ||||||||||||||||||||||| ||||| || ||||||||||
Sbjct 362 TGATCATCGTCCCTGAAATGATTGGAAGCATCATTGGAGTGTACAACGGAAAGACTTTCA 421
Query 415 ACCAAGTCGAGATCAAGCCTGAGATGATTGGTCACTACCTGGCTGAGTTCTCTATCTCAT 474
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 422 ACCAGGTTGAGATCAAGCCTGAGATGATTGGTCACTACCTGGCTGAGTTCTCTATCTCAT 481
Query 475 ACAAGCCGGTCAAGCACGGTAGGCCTGGTGTTGGTGCTACCCACTCTTCCAGATTCATTC 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 482 ACAAGCCGGTCAAGCACGGTAGGCCTGGTGTTGGTGCTACCCACTCTTCCAGATTCATTC 541
Query 535 CTCTTAAGTGAAAAGCTTCTATTTGGGGA-TGGGTT-ATCTTGTTCGTTATATGTGGATC 592
| ||||||||||||||||||||| ||||| || ||| | |||| ||||||||||||||||
Sbjct 542 CCCTTAAGTGAAAAGCTTCTATT-GGGGAATGTGTTTA-CTTGCTCGTTATATGTGGATC 599
Query 593 TAAGTATGTGGATCTCTTATGTTTTTGAAGCTTTATAATGACATTACTTTTAGATGTTTT 652
|||||| ||||||||||||||||||||||||||||||||||||||||||| ||| | |||
Sbjct 600 TAAGTACGTGGATCTCTTATGTTTTTGAAGCTTTATAATGACATTACTTT-AGAAGCTTT 658
Query 653 CTCGACTCTAGCTCTTGCGTTTTCATTATCATGTTACAAGAGGATCTTAAATCAAATCAT 712
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 CTCAACTCTAGCTCTTGCGTTTTCATTATCATGTTACAAGAGGATCTTAAATCAAATCAT 718
Query 713 TTTGGAGTTTTGTTATG 729
|||||| ||||||||||
Sbjct 719 TTTGGATTTTTGTTATG 735
> AT5G09500.1 | Symbols: | Ribosomal protein S19 family protein
| chr5:2953913-2954918 REVERSE LENGTH=652
Length=652
Score = 479 bits (259), Expect = 2e-134
Identities = 385/447 (86%), Gaps = 4/447 (1%)
Strand=Plus/Plus
Query 102 CCAGAGGTTGCTGCTGCTGGAGTGC-CAAAGAAGAGGACGTTTAAGAAGTTTGCCTTCAG 160
|||||||||||||| |||||| | | ||| ||||| ||||| || |||||| |||||||
Sbjct 78 CCAGAGGTTGCTGCGGCTGGAAT-CGTAAAAAAGAGAACGTTCAAAAAGTTTTCCTTCAG 136
Query 161 AGGAGTTGATCTCGATGCTCTTCTTGACATGTCTACTGATGATCTTGTCAAGCTCTTCTC 220
|||||| ||||| ||||||||||| ||||||||||||||||||||||||||||| ||| |
Sbjct 137 AGGAGTCGATCTTGATGCTCTTCTCGACATGTCTACTGATGATCTTGTCAAGCTTTTCCC 196
Query 221 TTCTCGTATTCGCAGAAGGTTCTCTAGAGGTTTGACGAGGAAGCCAATGGCTCTGATTAA 280
||| ||||| || ||||||||||||||||| |||||||||||||| |||||| |||| ||
Sbjct 197 TTCCCGTATCCGTAGAAGGTTCTCTAGAGGATTGACGAGGAAGCCTATGGCTTTGATCAA 256
Query 281 GAAGCTGAGGAAAGCGAAAAGGGAGGCACCA-CAAGGTGAGAAGCCAGAACCTGTGAGAA 339
||| ||| |||||||||||| || |||||| | || |||||||||| | | |||||||
Sbjct 257 GAAACTGCGGAAAGCGAAAATTGAAGCACCAGCT-GGAGAGAAGCCAGCAGCAGTGAGAA 315
Query 340 CCCACTTGAGGAACATGGTCATTGTCCCTGAGATGATTGGAAGCATCATTGGAGTTTACA 399
||||| | ||||||||| ||||||| ||||| |||||||||||| |||| || |||||||
Sbjct 316 CCCACCTAAGGAACATGATCATTGTGCCTGAAATGATTGGAAGCGTCATCGGTGTTTACA 375
Query 400 ATGGTAAGACTTTCAACCAAGTCGAGATCAAGCCTGAGATGATTGGTCACTACCTGGCTG 459
|||| |||||||| ||||| ||||||||||| || ||||||||||| || ||| ||||||
Sbjct 376 ATGGAAAGACTTTTAACCAGGTCGAGATCAAACCAGAGATGATTGGACATTACTTGGCTG 435
Query 460 AGTTCTCTATCTCATACAAGCCGGTCAAGCACGGTAGGCCTGGTGTTGGTGCTACCCACT 519
|||| || |||||||| ||||| || ||||| |||||||||||||||||||||||| | |
Sbjct 436 AGTTTTCAATCTCATATAAGCCTGTTAAGCATGGTAGGCCTGGTGTTGGTGCTACCAATT 495
Query 520 CTTCCAGATTCATTCCTCTTAAGTGAA 546
| |||||||| || ||||| |||||||
Sbjct 496 CCTCCAGATTTATCCCTCTCAAGTGAA 522
> AT5G43640.1 | Symbols: | Ribosomal protein S19 family protein
| chr5:17531302-17532370 FORWARD LENGTH=450
Length=450
Score = 455 bits (246), Expect = 3e-127
Identities = 384/451 (85%), Gaps = 8/451 (2%)
Strand=Plus/Plus
Query 99 GAACCAGAGGTTGCTGCTGCTGG-AGTGCCAAAGAAGAGGACGTTTAAGAAGTTTGCCTT 157
||||||||||||| ||| ||||| | || ||| ||||| || || || |||||| | ||
Sbjct 4 GAACCAGAGGTTGTTGCGGCTGGAATTGTGAAA-AAGAGAACCTTCAAAAAGTTTTCTTT 62
Query 158 CAGAGGAGTTGATCTCGATGCTCTTCTTGACATGTCTACT-GATGATCTTGTCAAGC-TC 215
||||||||| ||||||||||| ||||| |||||||| | | || ||||||||||| | |
Sbjct 63 CAGAGGAGTCGATCTCGATGCGCTTCTCGACATGTCCA-TCGAAGATCTTGTCAAACAT- 120
Query 216 TTCTCTTCTCGTATTCGCAGAAGGTTCTCTAGAGGTTTGACGAGGAAGCCAATGGCTCTG 275
||| ||| ||||||||||||||||| |||||||| ||||| || || || |||||| ||
Sbjct 121 TTCAGTTCCCGTATTCGCAGAAGGTTTTCTAGAGGATTGACCAGAAAACCTATGGCTTTG 180
Query 276 ATTAAGAAGCTGAGGAAAGCGAAAAGGGAGGCACCA-CAAGGTGAGAAGCCAGAACCTGT 334
|||||||| || | |||||||||| |||||||||| | ||||||||||||| | | ||
Sbjct 181 ATTAAGAAATTGCGCAAAGCGAAAATGGAGGCACCAGC-TGGTGAGAAGCCAGCATCAGT 239
Query 335 GAGAACCCACTTGAGGAACATGGTCATTGTCCCTGAGATGATTGGAAGCATCATTGGAGT 394
|||||| ||||||||||||||| ||||||| ||||| |||||||||||||||||||| ||
Sbjct 240 GAGAACACACTTGAGGAACATGATCATTGTGCCTGAAATGATTGGAAGCATCATTGGTGT 299
Query 395 TTACAATGGTAAGACTTTCAACCAAGTCGAGATCAAGCCTGAGATGATTGGTCACTACCT 454
||||| || |||||||| |||||||||||||||||||| ||||||||||| || ||| |
Sbjct 300 GTACAACGGAAAGACTTTTAACCAAGTCGAGATCAAGCCGGAGATGATTGGACATTACTT 359
Query 455 GGCTGAGTTCTCTATCTCATACAAGCCGGTCAAGCACGGTAGGCCTGGTGTTGGTGCTAC 514
|||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 360 GGCTGAGTTCTCAATCTCATACAAACCGGTAAAGCACGGTAGGCCTGGTGTTGGTGCTAC 419
Query 515 CCACTCTTCCAGATTCATTCCTCTTAAGTGA 545
| | || ||||| || || ||||| ||||||
Sbjct 420 CAATTCCTCCAGGTTTATCCCTCTCAAGTGA 450
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35364839488
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5