BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470417
Length=2435
Score E
Sequences producing significant alignments: (Bits) Value
AT1G04400.2 | Symbols: CRY2, FHA, AT-PHH1, PHH1, ATCRY2 | crypt... 3378 0.0
> AT1G04400.2 | Symbols: CRY2, FHA, AT-PHH1, PHH1, ATCRY2 | cryptochrome
2 | chr1:1185556-1188276 REVERSE LENGTH=2264
Length=2264
Score = 3378 bits (1829), Expect = 0.0
Identities = 2024/2115 (96%), Gaps = 26/2115 (1%)
Strand=Plus/Plus
Query 328 GAACTA-TCTTCTGGAGGAGCTTGAGGTCTGAAATCATGGAAAAACTTGGTTAGAGTGTG 386
|||||| || |||||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct 157 GAACTATTC-TCTGGAGGAGGTTGAGGTCTGAAATCATGGAACAACTTGGTTAGAGTGTG 215
Query 387 GAA-TTTAGCTGATTTGGTC-TTGATTCATCTCTGATCATAGCAACTATGACGACGGACA 444
||| ||||||||||||| || ||||||||||| |||||||| |||||||| || |||||
Sbjct 216 GAATTTTAGCTGATTTGATCTTTGATTCATCTGTGATCATAATAACTATGAAGATGGACA 275
Query 445 AAAAGACTATAGTTTGGTTTAGAAGAGACCTAAGGATTGAGGATAATCCTGCATTAGCAG 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 276 AAAAGACTATAGTTTGGTTTAGAAGAGACCTAAGGATTGAGGATAATCCTGCATTAGCAG 335
Query 505 CTGCTGCTCACGAAGGATCTGTTTTTCCTGTCTTCATTTGGTGTCCTGAAGAAGAAGGAC 564
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 336 CAGCTGCTCACGAAGGATCTGTTTTTCCTGTCTTCATTTGGTGTCCTGAAGAAGAAGGAC 395
Query 565 AGTTTTATCCAGGAAGAGCTTCAAGATGGTGGATGAAACAATCACTTGCTCACTTATCTC 624
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 396 AGTTTTATCCTGGAAGAGCTTCAAGATGGTGGATGAAACAATCACTTGCTCACTTATCTC 455
Query 625 AATCCTTGAAGGCTCTTGGATCTGACCTCACTTTAATCAAAACCCATAACACAG-TTTCA 683
|||||||||||||||||||||||||||||||||||||||||||||| ||||| | |||||
Sbjct 456 AATCCTTGAAGGCTCTTGGATCTGACCTCACTTTAATCAAAACCCACAACAC-GATTTCA 514
Query 684 GCTATCTTGGATTGTATCCGCGTTACTGGTGCTACAAAAGTCGTCTTTAACCATCTCTAT 743
|| ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 515 GCGATCTTGGATTGTATCCGCGTTACCGGTGCTACAAAAGTCGTCTTTAACCACCTCTAT 574
Query 744 GATCCTGTTTCGTTAGTTCGGGACCATACCGTAAAGGAGAAGCTGGTGGAACGTGGGATC 803
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 575 GATCCTGTTTCGTTAGTTCGGGACCATACCGTAAAGGAGAAGCTGGTGGAACGTGGGATC 634
Query 804 TCTGTGCAAAGCTACAATGGAGATCTATTGTATGAACCGTGGGAGATATACTGCGAAAAG 863
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 635 TCTGTGCAAAGCTACAATGGAGATCTATTGTATGAACCGTGGGAGATATACTGCGAAAAG 694
Query 864 GGCAAACCTTTTACGAGTTTCAGTTCTTACTGGAAGAAATGCTTAGATATGTCGATTGAA 923
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 695 GGCAAACCTTTTACGAGTTTCAATTCTTACTGGAAGAAATGCTTAGATATGTCGATTGAA 754
Query 924 TCTGTTATGTTTCCTCCTCCTTGGCGGTTGATGCCAATAACTGCAGCGGCTGAAGCGGTT 983
|| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 755 TCCGTTATGCTTCCTCCTCCTTGGCGGTTGATGCCAATAACTGCAGCGGCTGAAGCGATT 814
Query 984 TGGGCATGTTCGATTGAAGAACTAGGGCTAGAAAATGAGGCCGAAAAACCGAGCAATGCG 1043
||||| ||||||||||||||||||||||| || ||||||||||| |||||||||||||||
Sbjct 815 TGGGCGTGTTCGATTGAAGAACTAGGGCTGGAGAATGAGGCCGAGAAACCGAGCAATGCG 874
Query 1044 TTGTTAACTAGAGCTTGGTCTCCAGGATGGAGCAATGCTGATAAGATACTTAATGAGTTC 1103
||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct 875 TTGTTAACTAGAGCTTGGTCTCCAGGATGGAGCAATGCTGATAAGTTACTAAATGAGTTC 934
Query 1104 ATCGAGAAGCAGCTGATAGATTACGCAAAGAACAGCAA-AAAGGTTGTTGGGAATTCAAC 1162
|||||||||||| |||||||||| |||||||||||||| |||| ||||||||||||| ||
Sbjct 935 ATCGAGAAGCAGTTGATAGATTATGCAAAGAACAGCAAGAAAG-TTGTTGGGAATTCTAC 993
Query 1163 CTCACTGCTATCTCCATATCTCCATTTCGGGGAAATAAGCGTCAGACACGTTTTCCAGTG 1222
||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 994 TTCACTACTTTCTCCGTATCTCCATTTCGGGGAAATAAGCGTCAGACACGTTTTCCAGTG 1053
Query 1223 TGCCCGGATGAAACAAATCATATGGGCTAGAGATAAGAACAGTGAAGGAGAAGAAAGTGC 1282
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 1054 TGCCCGGATGAAACAAATTATATGGGCAAGAGATAAGAACAGTGAAGGAGAAGAAAGTGC 1113
Query 1283 AGATCTTTTTCTTAGAGGAATCGGTCTAAGAGAGTATTCTCGGTATATATGTTTCAACTT 1342
||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1114 AGATCTTTTTCTTAGGGGAATCGGTTTAAGAGAGTATTCTCGGTATATATGTTTCAACTT 1173
Query 1343 CCCGTTTACTCACGAGCAATCGTTGTTGAGTCATCTTCGGTTTTTCCCTTGGGATGCTGA 1402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1174 CCCGTTTACTCACGAGCAATCGTTGTTGAGTCATCTTCGGTTTTTCCCTTGGGATGCTGA 1233
Query 1403 TGTTGATAAGTTCAAGGCCTGGAGACAAGGCAGGACTGGTTATCCGTTGGTGGATGCCGG 1462
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1234 TGTTGATAAGTTCAAGGCCTGGAGACAAGGCAGGACCGGTTATCCGTTGGTGGATGCCGG 1293
Query 1463 AATGAGAGAGCTTTGGGCTACTGGATGGATGCATAACAGAATAAGAGTGATTGTTTCTAG 1522
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 1294 AATGAGAGAGCTTTGGGCTACCGGATGGATGCATAACAGAATAAGAGTGATTGTTTCAAG 1353
Query 1523 CTTTGCTGTGAAGTTTCTTCTCCTTCCATGGAAATGGGGAATGAAGTATTTCTGGGATAC 1582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1354 CTTTGCTGTGAAGTTTCTTCTCCTTCCATGGAAATGGGGAATGAAGTATTTCTGGGATAC 1413
Query 1583 ACTTTTGGATGCTGATTTGGAATGTGACATCCTTGGCTGGCAGTATATCTCTGGGAGCAT 1642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1414 ACTTTTGGATGCTGATTTGGAATGTGACATCCTTGGCTGGCAGTATATCTCTGGGAGTAT 1473
Query 1643 ACCCGATGGCCATGAGCTTGATCGCTTGGACAATCCCGCGTTACAAGGCGCTAAATATGA 1702
||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1474 CCCCGATGGCCACGAGCTTGATCGCTTGGACAATCCCGCGTTACAAGGCGCCAAATATGA 1533
Query 1703 CCCAGAAGGTGAGTACATAAGGCAATGGCTTCCCGAGCTTGCGAGATTGCCAACTGAATG 1762
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1534 CCCAGAAGGTGAGTACATAAGGCAATGGCTTCCCGAGCTTGCGAGATTGCCAACTGAATG 1593
Query 1763 GATACATCATCCATGGGACGCTCCGTTAACCGTACTCAAAGCTTCCGGGGTGGAACTCGG 1822
||| |||||||||||||||||||| |||||||||||||||||||| || |||||||||||
Sbjct 1594 GATCCATCATCCATGGGACGCTCCTTTAACCGTACTCAAAGCTTCTGGTGTGGAACTCGG 1653
Query 1823 AACAAACTATGCAAAACCCATTGTAGACATCGACACAGCTCGTGAGCTACTCGCTAAAGC 1882
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1654 AACAAACTATGCGAAACCCATTGTAGACATCGACACAGCTCGTGAGCTACTAGCTAAAGC 1713
Query 1883 CATATCAAGAACCCGTGAAGCACAGATCATGATCGGAGCAGCACCTGATGAGATTGTAGC 1942
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1714 TATTTCAAGAACCCGTGAAGCACAGATCATGATCGGAGCAGCACCTGATGAGATTGTAGC 1773
Query 1943 AGATAGCTTTGAGGCCTTAGAAGCTAATACAATTAAAGAACCTGGTCTTTGCCCATCTGT 2002
||||||||| |||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 1774 AGATAGCTTCGAGGCCTTAGGGGCTAATACCATTAAAGAACCTGGTCTTTGCCCATCTGT 1833
Query 2003 GTCTTCTAATGACCAACAAGTACCTTCGGCTGTTCGTTACAACGGGTCAAAGAGAGTGAA 2062
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1834 GTCTTCTAATGACCAACAAGTACCTTCGGCTGTTCGTTACAACGGGTCAAAGAGAGTGAA 1893
Query 2063 ACCTGGGGAAGAAGAAGAGAGAGACATGAAGAAATCTAGAGGATTCGATGAAAGGGAATT 2122
||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 1894 ACCTGAGGAAGAAGAAGAGAGAGACATGAAGAAATCTAGGGGATTCGATGAAAGGGAGTT 1953
Query 2123 GTTTTCGACTGCTGAATCTTCTTCTTCTTCGAGTGTGTTCTTT-GTTTCGCATTCTTGCT 2181
||||||||||||||||||||||||||||||||||||||| ||| |||||||| |||||||
Sbjct 1954 GTTTTCGACTGCTGAATCTTCTTCTTCTTCGAGTGTGTT-TTTCGTTTCGCAGTCTTGCT 2012
Query 2182 CGTTGGCATCAGAAGGGAAGAATTTGGAAGGTATTCAAGATTCATCTGATCAGCTTACCA 2241
||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |
Sbjct 2013 CGTTGGCATCAGAAGGGAAGAATCTGGAAGGTATTCAAGATTCATCTGATCAGATTACTA 2072
Query 2242 CAAGTATGGGAAAAAATGGTTGCAAATGATCAAAATAAGCTTTATGTGCTGTTATAAAGC 2301
||||| |||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 2073 CAAGTTTGGGAAAAAATGGTTGCAAATGATCAAAATAA--T----GTGCTGTTATAAAGC 2126
Query 2302 CTAACATGTAGATGTGTGAATGTGTCTTGAAGTTTTAACTCTCTT-TTTCCTTTTGCTTA 2360
|||||||||||||||||||||||||||| || |||||| || |||||||||| |||
Sbjct 2127 CTAACATGTAGATGTGTGAATGTGTCTT----TT--AACTCT-TTGTTTCCTTTTGGTTA 2179
Query 2361 TACTCAAAAGGATATATGGTTGCATAAACATATAATGCTGATATTATTTCAATTGGCTAT 2420
||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 2180 TACTCAAAAGGATAT--GATTGCATAAACATATAATGCTGATATTATTTCAATTGGCTAT 2237
Query 2421 GAATAAATTATACAT 2435
||||||| |||||||
Sbjct 2238 GAATAAAATATACAT 2252
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 120933112905
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5