BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470418
Length=1432
Score E
Sequences producing significant alignments: (Bits) Value
AT1G04410.1 | Symbols: | Lactate/malate dehydrogenase family p... 1993 0.0
AT5G43330.1 | Symbols: | Lactate/malate dehydrogenase family p... 1062 0.0
> AT1G04410.1 | Symbols: | Lactate/malate dehydrogenase family
protein | chr1:1189078-1191412 REVERSE LENGTH=1484
Length=1484
Score = 1993 bits (1079), Expect = 0.0
Identities = 1246/1324 (94%), Gaps = 22/1324 (2%)
Strand=Plus/Plus
Query 1 TACATCCTTCGATATCTTCTTCGATAAATACACaaaaaaaGAGTGAGCTTCACGGACACA 60
|||||||||||||| |||||||||||||| | ||||||||||||||||| || |
Sbjct 11 TACATCCTTCGATA---TCTTCGATAAATACGC-----AAGAGTGAGCTTCACGGTCAGA 62
Query 61 CCAAAGCAGCTGACTCTACGCTCTCTCAAAAGTCGAATATCCCAACTTCGATCCGTTTTC 120
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 63 -CAAA--AGCTGACTCTACGCTCTCTCAAAAGTCGAATATCCCAAATTCGATCCGTTTTC 119
Query 121 CGGCGATAATCTCCGATCTTGATCCGATGGCCAAAGAACCAGTTCGTGTACTCGTCACTG 180
||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||| ||||
Sbjct 120 CGGCGATAATCTCCGATCTAGATCCGATGGCGAAAGAACCAGTTCGTGTGCTCGTTACTG 179
Query 181 GAGCTGCAGGGCAAATCGGATATGCTCTTGTCCCTATGATTGCCAGGGGTATCATGCTTG 240
|||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 180 GAGCTGCAGGACAAATCGGATATGCTCTTGTACCTATGATTGCAAGGGGTATCATGCTTG 239
Query 241 GTGCTGACCAACCTGTTATTCTCCACATGTTGGATATTCCTCCTGCTGCTGAAGCTTTGA 300
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 240 GTGCTGACCAACCTGTTATCCTCCACATGTTGGATATTCCTCCAGCTGCTGAAGCTTTGA 299
Query 301 ACGGTGTTAAGATGGAGTTGATCGATGCTGCTTTCCCTCTTCTCAAAGGTGTTGTTGCTA 360
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 300 ACGGTGTTAAGATGGAGTTGATCGATGCTGCTTTCCCTCTTCTTAAAGGTGTTGTTGCTA 359
Query 361 CAACTGATGCCGTTGAGGGATGTACTGGAGTCAACGTTGCTGTTATGGTTGGTGGTTTCC 420
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 360 CAACTGATGCCGTTGAGGGATGTACTGGAGTCAATGTTGCTGTTATGGTTGGTGGTTTCC 419
Query 421 CGAGGAAGGAAGGAATGGAGAGGAAGGATGTGATGTCCAAGAATGTCTCTATCTACAAGT 480
||||||| ||||| |||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 420 CGAGGAAAGAAGGTATGGAGAGGAAGGATGTGATGTCCAAGAATGTTTCCATCTACAAGT 479
Query 481 CTCAGGCTGCTGCATTGGAGAAACATGCCGCTCCAAACTGCAAGGTTCTTGTTGTGGCTA 540
||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||| |
Sbjct 480 CTCAGGCTGCTGCCTTGGAGAAGCATGCCGCTCCTAACTGCAAGGTTCTTGTTGTGGCCA 539
Query 541 ACCCCGCGAATACCAACGCATTGATCCTCAAGGAATTTGCGCCATCCATCCCTGAAAAGA 600
|||| || || ||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 540 ACCCGGCAAACACCAACGCATTGATCCTCAAGGAATTTGCACCATCAATCCCTGAAAAGA 599
Query 601 ACATCTCTTGTTTGACAAGGCTTGACCACAACAGGGCATTGGGCCAGATCTCTGAGAGGT 660
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 600 ACATCTCTTGTTTGACAAGGCTTGACCACAACAGGGCTTTGGGACAGATCTCTGAGAGGT 659
Query 661 TGAGCGTGCCAGTGTCTGATGTTAAGAACGTGATCATCTGGGGAAACCACTCATCCTCAC 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 TGAGCGTGCCAGTGTCTGATGTTAAGAACGTGATCATCTGGGGAAACCACTCATCCTCAC 719
Query 721 AGTACCCAGATGTCAACCATGCTAAAGTGCAGACCTCATCTGGAGAGAAGCCTGTCCGTG 780
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 720 AGTACCCAGATGTCAACCATGCTAAAGTGCAGACCTCGTCTGGAGAGAAGCCTGTCCGTG 779
Query 781 AGCTCGTCAAGGACGATGCATGGTTGGACGGGGAATTCATCTCTACAGTTCAACAACGTG 840
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 780 AGCTCGTCAAGGACGATGCATGGTTGGACGGAGAATTTATCTCTACAGTTCAACAACGTG 839
Query 841 GAGCTGCAATCATCAAGGCGAGAAAGTTGTCTAGTGCACTTTCTGCTGCTAGCTCTGCTT 900
|||||||||||||||||||||| |||||||||||||| || |||||||||||||||||||
Sbjct 840 GAGCTGCAATCATCAAGGCGAGGAAGTTGTCTAGTGCGCTCTCTGCTGCTAGCTCTGCTT 899
Query 901 GTGACCACATCCGTGACTGGGTCCTTGGAACTCCAGAGGGTACGTTTGTTTCCATGGGAG 960
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 900 GTGACCACATCCGTGACTGGGTCCTTGGAACTCCAGAGGGTACGTTCGTTTCCATGGGAG 959
Query 961 TGTACTCCGATGGCTCTTACAACGTTCCGTCAGGACTTATCTACTCCTTCCCTGTAACTT 1020
| ||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct 960 TATACTCCGATGGCTCTTACAGCGTTCCATCAGGACTTATCTACTCCTTCCCTGTAACTT 1019
Query 1021 GTCGCAATGGAGAGTGGAGTATTGTCCAAGGCCTTCCGATTGATGAAGTATCAAGGAAGA 1080
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 GTCGCAATGGAGACTGGAGTATTGTCCAAGGCCTTCCGATTGATGAAGTATCAAGGAAGA 1079
Query 1081 AGATGGATTTGACAGCGGAGGAGCTCAAGGAAGAGAAGGACTTGGCGTACTCATGCCTCT 1140
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 AGATGGATTTGACTGCAGAGGAGCTCAAGGAAGAGAAGGACTTGGCGTACTCATGCCTCT 1139
Query 1141 CTTAAACCCTTGTGAAGCAAA-TTTTCACCTATAAGGTGTGAGACCATTTAAAGT-TTTC 1198
||||||||||| || |||||| |||||| ||||||||||||||| || |||||| ||||
Sbjct 1140 CTTAAACCCTTCTGGAGCAAAATTTTCATCTATAAGGTGTGAGATCAGTTAAAGCCTTTC 1199
Query 1199 AGGGCTTTGTCGGAATAAGAAGTTTGTTT-AAAGTATCTCAAAACACTGTTTAATAACCT 1257
||||||||||| ||||||||||| ||||| |||| ||||| ||||||||||| |||||||
Sbjct 1200 AGGGCTTTGTCCGAATAAGAAGTGTGTTTGAAAG-ATCTCCAAACACTGTTTTATAACCT 1258
Query 1258 CTTTGTGGGGTTGTCTCGTTAATGAGCATTGTCCCTGGTCTGTTTCTAAACCAGGATATC 1317
||||| | | ||| || ||||| |||||||||||||||||||||||||||||||||
Sbjct 1259 CTTTG-G---TC-TCT--TTGATGAGTATTGTCCCTGGTCTGTTTCTAAACCAGGATATC 1311
Query 1318 GTTT 1321
||||
Sbjct 1312 GTTT 1315
> AT5G43330.1 | Symbols: | Lactate/malate dehydrogenase family
protein | chr5:17390433-17392645 FORWARD LENGTH=1314
Length=1314
Score = 1062 bits (575), Expect = 0.0
Identities = 890/1042 (85%), Gaps = 22/1042 (2%)
Strand=Plus/Plus
Query 120 CCGGCGATAA-TCTCCGATCT---TGATCCGATGGCCAAAGAACCAGTTCGTGTACTCGT 175
|||||||||| | |||||||| | || |||||| || |||||||||||||| || ||
Sbjct 89 CCGGCGATAATTTTCCGATCTCGATTATAAGATGGCGAAGGAACCAGTTCGTGTTCTTGT 148
Query 176 CACTGGAGCTGCAGGGCAAATCGGATATGCTCTTGTCCCTATGATTGCCAGGGGTATCAT 235
|| ||||||||||| |||||||||||||||||||| ||||||||||| ||||| || ||
Sbjct 149 TACCGGAGCTGCAGGACAAATCGGATATGCTCTTGTTCCTATGATTGCAAGGGGGATAAT 208
Query 236 GCTTGGTGCTGACCAACCTGTTATTCTCCACATG-TTGGATATTCCTCCTGCTGCTGAAG 294
|||||||||||| || ||||| || ||||||||| || || || ||| ||| || ||||
Sbjct 209 GCTTGGTGCTGATCAGCCTGTGATCCTCCACATGCTT-GACATCCCTTTTGCAGCAGAAG 267
Query 295 CTTTGAACGGTGTTAAGATGGAGTTGATCGATGCTGCTTTCCCTCTTCTCAAA-GGTGTT 353
||||||||||||| |||||||| ||| |||||||||||||||||||||| ||| |||||
Sbjct 268 CTTTGAACGGTGTGAAGATGGAATTGGTCGATGCTGCTTTCCCTCTTCT-AAAGGGTGTG 326
Query 354 GTTGCTACAACTGATGCCGTTG-AGGGATGTACTGGAGTCAACGTTGCTGTTATGGTTGG 412
|| |||||||||||||| |||| || | ||||| || || || |||||||| ||||||||
Sbjct 327 GTGGCTACAACTGATGCTGTTGAAGCG-TGTACCGGTGTTAATGTTGCTGTCATGGTTGG 385
Query 413 TGGTTTCCCGAGGAAGGAAGGAATGGAGAGGAAGGATGTGATGTCCAAGAATGTCTCTAT 472
||||||||||||||||||||||||||||||||||||||| ||||||||||| || || ||
Sbjct 386 TGGTTTCCCGAGGAAGGAAGGAATGGAGAGGAAGGATGTTATGTCCAAGAACGTTTCCAT 445
Query 473 CTACAAGTCTCAGGCTGCTGCATTGGAGAAACATGCCGCTCCAAACTGCAAGGTTCTTGT 532
||||||||||| ||| |||| |||||||| ||||| || ||||||||||||||||| ||
Sbjct 446 TTACAAGTCTCAAGCTTCTGCCTTGGAGAAGCATGCTGCACCAAACTGCAAGGTTCTGGT 505
Query 533 TGTGGCTAACCCCGCGAATACCAACGCATTGATCCTCAAGGAATTTGCGCCATCCATCCC 592
||| || ||||| || || ||||| ||||||||||| ||||||||||| ||||| |||||
Sbjct 506 TGTTGCAAACCCTGCAAACACCAATGCATTGATCCTGAAGGAATTTGCACCATCGATCCC 565
Query 593 TGAAAAGAACATCT-CTTGTTTGACAAGGCTTGACCACAACAGGGCATTGGGCCA-GATC 650
|| |||||||| | |||| ||||| |||||||||||||||||||||||||| || | |
Sbjct 566 AGAGAAGAACAT-TACTTGCTTGACCAGGCTTGACCACAACAGGGCATTGGGACAAG-TG 623
Query 651 TCTGAGAGGTTGAGCGTGCCAGTGTCTGATGTTAAGAACGTGATCATCTGGGGAAACCAC 710
||||||||||| ||||| |||||||||||||| ||||||||||| |||||||||||||||
Sbjct 624 TCTGAGAGGTTAAGCGTACCAGTGTCTGATGTGAAGAACGTGATTATCTGGGGAAACCAC 683
Query 711 TCATCCTCACAGTACCCAGATGTCAACCATGCTAAAGTGCAGACCTCA-TCTGGAGAGAA 769
||||| | || ||||||||||||||||| |||| || |||| || | |||||||||
Sbjct 684 TCATCAACCCAATACCCAGATGTCAACCACGCTACCGTTAAGACTTCCGT-TGGAGAGAA 742
Query 770 GCCTGTCCGTGAGCTCGTCAAGGACGATGCA-TGGTTGGACGGGGAATTCATCTCTACAG 828
||| || |||||||| |||||| | || | | |||||| | || || ||||||||||| |
Sbjct 743 GCCAGTGCGTGAGCTAGTCAAGAATGACG-AGTGGTTGAATGGAGAGTTCATCTCTACCG 801
Query 829 TTCAACAACGTGGAGCTGCAATCATCAAGGCGAGAAAGTTGTCTAGTGCACTTTCTGCTG 888
||||||||||||| ||||| || |||||||| || ||| ||||||||||||||||||| |
Sbjct 802 TTCAACAACGTGGTGCTGCCATTATCAAGGCCAGGAAGCTGTCTAGTGCACTTTCTGCAG 861
Query 889 CTAGCTCTGCTTGTGACCACATCCGTGACTGGGTCCTTGGAACTCCAGAGGGTACGTTTG 948
||||||| ||||||||||| |||||||| ||||| ||||||| || ||||| || ||||
Sbjct 862 CTAGCTCAGCTTGTGACCATATCCGTGATTGGGTTGTTGGAACACCTGAGGGCACATTTG 921
Query 949 TTTCCATGGGAGTGTACTCCGATGGCTCTTACAACGTTCC-GTCAGGACTTATCTACTCC 1007
|||| |||||||| ||||| ||||| || ||||| ||||| | | |||||||||||||||
Sbjct 922 TTTCAATGGGAGTATACTCAGATGGATCCTACAATGTTCCAG-CTGGACTTATCTACTCC 980
Query 1008 TTCCCTGTAACTTGTCGCAATGGAGAGTGGAGTATTGTCCAAGGCCTT-CCGATTGATGA 1066
||||| ||||| || || ||||||||||||| ||||| ||||| || |||||||||||
Sbjct 981 TTCCCCGTAACCTGCCGTAATGGAGAGTGGACCATTGTTCAAGGT-TTACCGATTGATGA 1039
Query 1067 AGTATCAAGGAAGAAGATGGATTTGACAGCGGAGGAGCTCAAGGAAGAGAAGGACTTGGC 1126
| ||| ||||||||||||||||||||||| |||||| | ||||||||||||||| | ||
Sbjct 1040 CGCATCGAGGAAGAAGATGGATTTGACAGCAGAGGAGTTGAAGGAAGAGAAGGACCTCGC 1099
Query 1127 GTACTCATGCCTCTCTTAAACC 1148
|||||||||||||||||||||
Sbjct 1100 TTACTCATGCCTCTCTTAAACC 1121
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70581966270
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5