BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg470423

Length=464
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G04445.1 | Symbols:  | C2H2-like zinc finger protein | chr1:...   364    3e-100


> AT1G04445.1 | Symbols:  | C2H2-like zinc finger protein | chr1:1207344-1207862 
FORWARD LENGTH=519
Length=519

 Score =  364 bits (197),  Expect = 3e-100
 Identities = 306/355 (86%), Gaps = 21/355 (6%)
 Strand=Plus/Plus

Query  1    ATGGCATTTTCA-AACCCCCAAGAATGTGCGATTTGTAAGAGAGTCTTCTTATCATCACA  59
            ||| |||||||| || ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct  1    ATGCCATTTTCAGAA-CCCCAAGAATGTGCGGTTTGTAAGAGAGTCTTCTTATCATCACA  59

Query  60   CCACCTGATCTCACACTTCAACGATGTTCACTCCAATCGCCACG-GTTCCACCTTCTCTT  118
            ||| ||||||||||||| |||||  | ||||||||||||||| |  ||||||||||||||
Sbjct  60   CCAGCTGATCTCACACTACAACGCCGCTCACTCCAATCGCCA-GTATTCCACCTTCTCTT  118

Query  119  CCT---------CCG-C-CATC-GCTACACCCACCTCCTTCCGCCACTACCCGAACGTAA  166
            |||         ||| | |  | ||| |||||||| |||||||||||||| | |||||||
Sbjct  119  CCTCCCCCGCCGCCGCCGCCGCTGCTGCACCCACCACCTTCCGCCACTACACTAACGTAA  178

Query  167  A---CCGGAACCCTAATCCTGATTTTCAGGCGAGGAATCATTTTGACGTGAATTATTACC  223
            |   |||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct  179  ACGGCCGGAACCCTAATCCTGATTTTCAGGCGAGGAATCAGTTTGACGTGAATTATTACC  238

Query  224  GTAGGGGTTACTTAGACGACCACGGGAGGTTTCATAAAGGATGTTCTC-CGACGCCGGTG  282
            |||| ||||||||||| || || |||||||| |||||||||| | |||  | |||||| |
Sbjct  239  GTAGAGGTTACTTAGATGATCAAGGGAGGTTCCATAAAGGATCTCCTCATG-CGCCGGCG  297

Query  283  ATAACTCCGACCAGAAAATATAAGTTTTTGCTGCCAAAGATGCCGACGACGCCGA  337
            || | |||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct  298  ATGAGTCCGACCAGAAAATATAAGTTTTTGCTGCCAAAGATGCCGCCGACGACGA  352



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22052790533


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5