BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470424
Length=800
Score E
Sequences producing significant alignments: (Bits) Value
AT1G04450.1 | Symbols: RIC3 | ROP-interactive CRIB motif-contai... 1291 0.0
> AT1G04450.1 | Symbols: RIC3 | ROP-interactive CRIB motif-containing
protein 3 | chr1:1208521-1209874 FORWARD LENGTH=905
Length=905
Score = 1291 bits (699), Expect = 0.0
Identities = 770/804 (96%), Gaps = 5/804 (1%)
Strand=Plus/Plus
Query 1 TCTCTCTCTCTTTCCAATTCTTTTCTCAATTATTTCCAAAATGAAAATCAATGCTATCAA 60
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 99 TCTCTCTCCCTTTCCAATTCTTTTCTCAATTATTTCCATAATGAAAATCAATGCTATCAA 158
Query 61 GGTTTTGGCACATTCAGAGAGTTACAGCATCTGAATTTCTAACCGGAAACCATTCCTCCC 120
|||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||
Sbjct 159 GGTTTTGGCACATTCACAGAGTTACAGCATCTGAAGTTCTAACCGGAAACCATTCCTCCC 218
Query 121 GTA-ATGACGACCGTGAAAGGCCTTCTTAAAGGCCTTCGCTACATTACTCAGATTTTCGA 179
| | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 219 G-AGATGGCGACCGTGAAAGGCCTTCTTAAAGGCCTTCGCTACATTACTCAGATTTTCGA 277
Query 180 CGAAGATAAAGACAAGGATATGCAGATCGGGTTTCCTACCGATGTAAAGCATGTCGCCCA 239
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 278 CGAAGAAAAAGACAAGGACATGCAGATCGGGTTTCCTACCGATGTAAAGCATGTCGCCCA 337
Query 240 CATCGGATCCGACGGTCCCGCGGCCAATATGCCAAGCTGGATGGGTGACTTCAGACCTCA 299
|||||||||||||||||||||| ||||| |||||||||||||||||||||||| ||||||
Sbjct 338 CATCGGATCCGACGGTCCCGCGACCAATGTGCCAAGCTGGATGGGTGACTTCAAACCTCA 397
Query 300 AGACAATGAGAATGGTCAAGTAGTTTCTCGAGGAGATGCCAACAACAATCAAATAGGAGA 359
||| || ||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 398 AGAAAACGAGAATGGTCAAGTAGTTTCTCGAGCAGATGCCAACAACAATCAAATAGGAGA 457
Query 360 AGGAGTTGGATTACAAGAGTTGTTGCCTCCTACCGAGAAACCGAAGCACAAGAAGACTAG 419
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||
Sbjct 458 AGGAGTTGGATTACAAGAGTTGTTGCCTCCTACCGACAAACCAAAGCACAAGAAGACAAG 517
Query 420 GCGTAAATCCGAGACGGTCTCACAAAACGGTTCTCCGCCTAGGCGAAACAGCAGTGCGTC 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 518 GCGTAAATCCGAGACGGTCTCACAAAACGGTTCTCCGCCTAGGCGAAACAGCAGTGCCTC 577
Query 480 AGCATCAGATATGCAACCAAAACACCCGAGACGTCACCACAGGAGTAGGCACGGATCGAT 539
|||||||||||||||||||||| || | |||||||||||||||||||||||||| |||||
Sbjct 578 AGCATCAGATATGCAACCAAAAAACACAAGACGTCACCACAGGAGTAGGCACGGGTCGAT 637
Query 540 AGATTCATCGAATGATCCATCAGTTAGGAGGAGGCGTGTTGTCTCGGTTACCACT---GA 596
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 638 AGATTCATCGAATGATCCATCAGTTAGGAGGAGGCGTGTTGTCTCGGTTACCACCAACGA 697
Query 597 TATGGAAGGTTCATACCCTCTTTCAGACAGTTCTACTCATACTAGAAAGTCTACATCACG 656
|||||||||||| |||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 698 TATGGAAGGTTCTTACCCTCTTTCAGATAGTTCTACTCATAGTAGAAAGTCTACATCACG 757
Query 657 TCATAGGAAGCCAAAAGAATCAGGAGGAGGAGAGCTATCAATGAAGAAGACAAAAGGGAA 716
||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct 758 TCATAGGAAGCCAAAAGGATCAGGAGGAGGAGAGCTATCAATGAAGAAGACGAAAGGGAA 817
Query 717 AACTGAGAATCCTATTGTTCAATCAGTCGATAAATGTAATGATAATAATATCAGTGACAA 776
||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct 818 AACTGAGAATCCTATTGTTGAATCAGTCGATACATGTAATGATAATAATATCAGTGACAA 877
Query 777 AGAGTAAAACACATCATGGTTTTG 800
||||||||||||||||||||||||
Sbjct 878 AGAGTAAAACACATCATGGTTTTG 901
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38931463925
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5