BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470426
Length=593
Score E
Sequences producing significant alignments: (Bits) Value
AT1G04480.1 | Symbols: | Ribosomal protein L14p/L23e family pr... 970 0.0
AT2G33370.1 | Symbols: | Ribosomal protein L14p/L23e family pr... 514 4e-145
AT3G04400.1 | Symbols: emb2171 | Ribosomal protein L14p/L23e fa... 425 2e-118
> AT1G04480.1 | Symbols: | Ribosomal protein L14p/L23e family
protein | chr1:1216095-1217467 FORWARD LENGTH=648
Length=648
Score = 970 bits (525), Expect = 0.0
Identities = 574/597 (96%), Gaps = 6/597 (1%)
Strand=Plus/Plus
Query 1 TTCAAGCCGTCAACAATGTCGAAGCGAGGGCGTGGAGGTACCTCTGGTAACAAATTCAGG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TTCAAGCCGTCAACAATGTCGAAGCGAGGGCGTGGAGGTACCTCTGGTAACAAATTCAGG 60
Query 61 ATGTCACTGGGTCTTCCAGTGGCGGCGACGGTTAACTGTGCCGATAACACCGGTGCTAAG 120
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 61 ATGTCACTGGGTCTTCCGGTGGCGGCGACGGTGAACTGTGCCGATAACACCGGTGCTAAG 120
Query 121 AATCTGTACATCATTTCGGTGAAAGGTATCAAAGGTCGTCTTAATCGATTACCTTCTGCT 180
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AATCTCTACATCATTTCCGTGAAAGGTATCAAAGGTCGTCTTAATCGATTACCTTCTGCT 180
Query 181 TGCGTCGGCGACATGGTGATGGCCACCGTCAAAAAGGGTAAGCCTGATCTCCGGAAAAAG 240
|||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 181 TGCGTCGGAGACATGGTGATGGCCACCGTCAAAAAGGGTAAGCCTGATCTCAGGAAAAAG 240
Query 241 GTTCTTCCTGCCGTCATCGTCAGGCAACGCAAACCATGGCGCCGAAAGGATGGTGTCTTC 300
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 241 GTTCTTCCTGCCGTCATCGTTAGGCAACGCAAACCATGGCGCCGAAAGGATGGTGTTTTC 300
Query 301 ATGTACTTCGAAGATAATGCTGGAGTCATTGTCAACCCCAAGGGAGAAATGAAAGGTTCT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 ATGTACTTCGAAGATAATGCTGGAGTCATTGTCAACCCCAAGGGAGAAATGAAAGGTTCT 360
Query 361 GCAATTACTGGTCCTATTGGGAAAGAGTGTGCTGATCTTTGGCCAAGGATTGCTAGTGCT 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GCAATTACTGGTCCTATTGGGAAAGAGTGTGCTGATCTTTGGCCAAGGATTGCTAGTGCT 420
Query 421 GCCAATGCCATTGTCTAATGATCAGATCAATCAATTGCTTGTATTTGATGGATCA-GTCT 479
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 421 GCCAATGCCATTGTCTAATGATCAGATCAATCAATTGCTTGTATTTGATGGAT-ATGTCT 479
Query 480 AAATACAA-TCTTGAGAATTTTTGTACCAAGATATTTTTATTTTCTGACAATATGTATCC 538
| |||||| | ||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 480 AGATACAAAT-TTGAGAATTTTGGTAGCAAGATATTTTTATTTTCTGACAATATGTATCT 538
Query 539 GACATTGAAATGTTTTGGCTATTTAGACA-TTTTTCC-AAGTTCCTTTCTGTTCTGT 593
|||||| ||||| ||||||||||| |||| ||||| | |||||| ||||||||||||
Sbjct 539 GACATTCAAATGATTTGGCTATTTTGACAATTTTTTCTAAGTTCTTTTCTGTTCTGT 595
> AT2G33370.1 | Symbols: | Ribosomal protein L14p/L23e family
protein | chr2:14143554-14144721 REVERSE LENGTH=664
Length=664
Score = 514 bits (278), Expect = 4e-145
Identities = 389/443 (88%), Gaps = 6/443 (1%)
Strand=Plus/Plus
Query 5 AGCCGTC-AACAATGTCGAAGCGAGGGCGTGGAGGTACCTCTGGTAACAAATTCAGGATG 63
||||||| || ||||||||||||||| |||||||| || |||||||||||||||||||||
Sbjct 67 AGCCGTCGAA-AATGTCGAAGCGAGGACGTGGAGGAACGTCTGGTAACAAATTCAGGATG 125
Query 64 TCACTGGGTCTTCCAGTGGCGGCGACGGTTAACTGTGCCGATAACACCGGTGCTAAGAAT 123
||||| ||||| || || || || || || |||||||| || ||||| |||||||||||
Sbjct 126 TCACTTGGTCTGCCCGTTGCAGCCACAGTGAACTGTGCAGACAACACTGGTGCTAAGAAC 185
Query 124 CTGTACATCATTTCGGTGAAAGGTATCAAAGGTCGTCTTAATCGATTACCTTCTGCTTGC 183
|| |||||||| || || ||||| |||||||||||||| ||||| ||||||||||||||
Sbjct 186 CTTTACATCATCTCTGTTAAAGGAATCAAAGGTCGTCTCAATCGGTTACCTTCTGCTTGT 245
Query 184 GTCGGCGACATGGTGATGGCCACCGTCAA-AAAGGGTAAGCCTGATCTCCGGAAAAAGGT 242
|| || |||||||| |||||||| ||||| ||| ||||| || || ||| ||||||||||
Sbjct 246 GTTGGTGACATGGTTATGGCCACTGTCAAGAAA-GGTAAACCAGACCTCAGGAAAAAGGT 304
Query 243 TCTTCCTGCCGTCATCGTCAGGCAACGCAAACCATGGCGCCGAAAGGATGGTGTCTTCAT 302
||||||||| || || || |||||||| || ||||||||||||||||| ||||| |||||
Sbjct 305 TCTTCCTGCTGTGATTGTTAGGCAACGTAAGCCATGGCGCCGAAAGGACGGTGTTTTCAT 364
Query 303 GTACTTCGAAGATAATGCTGGAGTCATTGTCAACCCCAAGGGAGAAATGAAAGGTTCTGC 362
|||||| ||||||||||||||||| ||||| ||||| |||||||||||||||||||||||
Sbjct 365 GTACTTTGAAGATAATGCTGGAGTGATTGTGAACCCTAAGGGAGAAATGAAAGGTTCTGC 424
Query 363 AATTACTGGTCCTATTGGGAAAGAGTGTGCTGATCTTTGGCCAAGGATTGCTAGTGCTGC 422
||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 425 AATTACTGGACCTATTGGGAAAGAGTGTGCGGATCTCTGGCCAAGGATTGCTAGTGCTGC 484
Query 423 CAATGCCATTGTCT-AATGATCA 444
|| |||||||||| || |||||
Sbjct 485 TAACGCCATTGTCTGAA-GATCA 506
> AT3G04400.1 | Symbols: emb2171 | Ribosomal protein L14p/L23e
family protein | chr3:1167276-1168659 FORWARD LENGTH=837
Length=837
Score = 425 bits (230), Expect = 2e-118
Identities = 365/431 (85%), Gaps = 6/431 (1%)
Strand=Plus/Plus
Query 11 CAACAATGTCGAAGCGAGGGCGTGGAGGTACCTCTGGTAACAAATTCAGGATGTCACTGG 70
|||| |||||||||||||| | ||||| |||||||||||||| ||||||||||||||||
Sbjct 59 CAACCATGTCGAAGCGAGGAAGAGGAGGAACCTCTGGTAACAAGTTCAGGATGTCACTGG 118
Query 71 GTCTTCCAGTGGCGGCGACGGTTAACTGTGCCGATAACACCGGTGCTAAGAATCTGTACA 130
||||||||||||| || || || |||||||| || |||||||| |||||||| || ||||
Sbjct 119 GTCTTCCAGTGGCAGCCACTGTGAACTGTGCTGACAACACCGGAGCTAAGAACCTTTACA 178
Query 131 TCATTTCGGTGAAAGGTATCAAAGGTCGTCTTAATCGATTACCTTCTGCTTGCGTCGGCG 190
|||||||||| ||||| ||||| ||||||||||| || || || || || || || || |
Sbjct 179 TCATTTCGGTTAAAGGAATCAAGGGTCGTCTTAACCGTTTGCCATCAGCGTGTGTTGGTG 238
Query 191 ACATGGTGATGGCCACCGTCAA-AAAGGGTAAGCCTGATCTCCGGAAAAAGGTTCTTCCT 249
| ||||| ||||| || || || ||||| ||||||||||||||| || ||||| ||||||
Sbjct 239 ATATGGTTATGGCTACTGTTAAGAAAGG-TAAGCCTGATCTCCGTAAGAAGGTGCTTCCT 297
Query 250 GCCGTCATCGTCAGGCA-ACGCAAACCATGGCGCCGAAAGGATGGTGTCTTCATGTACTT 308
|| ||||| || ||||| | | || || |||||||||||||| |||||||||||||| ||
Sbjct 298 GCTGTCATTGTTAGGCAGAGG-AAGCCTTGGCGCCGAAAGGACGGTGTCTTCATGTATTT 356
Query 309 CGAAGATAATGCTGGAGTCATTGTCAACCCCAAGGGAGAAATGAAAGGTTCTGCAATTAC 368
||||||||||||||| ||||||||||| |||||||| ||||||||||| ||||| || ||
Sbjct 357 CGAAGATAATGCTGGTGTCATTGTCAATCCCAAGGGTGAAATGAAAGGATCTGCTATCAC 416
Query 369 TGGTCCTATTGGGAAAG-AGTGTGCTGATCTTTGGCCAAGGATTGCTAGTGCTGCCAATG 427
||| || || || |||| ||||||||||||| |||||||| || || |||||||| || |
Sbjct 417 TGGACCAATCGG-AAAGGAGTGTGCTGATCTGTGGCCAAGAATCGCAAGTGCTGCGAACG 475
Query 428 CCATTGTCTAA 438
|||| || |||
Sbjct 476 CCATCGTTTAA 486
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28532995496
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5