BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470427
Length=1632
Score E
Sequences producing significant alignments: (Bits) Value
AT1G04490.1 | Symbols: | Protein of unknown function (DUF3527)... 1672 0.0
> AT1G04490.1 | Symbols: | Protein of unknown function (DUF3527)
| chr1:1218005-1219914 REVERSE LENGTH=1424
Length=1424
Score = 1672 bits (905), Expect = 0.0
Identities = 1280/1451 (88%), Gaps = 65/1451 (4%)
Strand=Plus/Plus
Query 139 AGAGTAGAGGGAAACTTGTTTATGCTTTATATTTGGTTAGACAGCCAAAAGAAGGAGCAA 198
|||| ||||||||| |||||||||||||| ||||||| |||| | | |||||| ||||||
Sbjct 10 AGAGAAGAGGGAAATTTGTTTATGCTTTAAATTTGGTGAGACTGACGAAAGAATGAGCAA 69
Query 199 TAATCCACAAGTAGGATTATCATCTTGGTCGAAAATATTTCGTTGATCCAGTTTATCCAG 258
||||||||||| |||||| ||||||| ||||| |||||||||||| | ||||||
Sbjct 70 TAATCCACAAGGAGGATTTTCATCTTAGTCGACAATATTTCGTTG----A----ATCCAG 121
Query 259 GTAAAAAGCATTTTTTCGTTTCAATTAAAAAAGCTTTATAAATATTAACCCATAATTTCC 318
|| |||||| |||||| || |||||||||| |||||| |||| |||||||| |
Sbjct 122 GT-------TTTTTTTGGTTTCATTTTAAAAAGCTTTGTAAATAATAACACATAATTTAC 174
Query 319 A-GAATTCCTCTGGAATTTTGACAACAGAGATGGAGGGTGATACTCCTCATGCTCAAAAC 377
| |||||||| ||| | |||| ||| ||||||||| ||| | |||| | |||||||||||
Sbjct 175 AGGAATTCCTGTGGCA-TTTGGCAATAGAGATGGAAGGTCAAACTCATGATGCTCAAAAC 233
Query 378 AATGACCCTGAGCACGACAATCCATTGATGAATGTGAACAATCCATCAAGCAACTTGACT 437
|||| |||||||| ||||||||||||||||||||||| |||||||||||||||||| |
Sbjct 234 AATGTTCCTGAGCATGACAATCCATTGATGAATGTGAAGAATCCATCAAGCAACTTGTTT 293
Query 438 TCTAAGAAAGATGCACAATGTTTGTCGGTTTTATGCAACGGGAAATGGTTACACATTGTT 497
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 294 TCTAAGAAAGATGCACAATGTTTGTCTGTTTTATGCAACGGGAAATGGTTACAGATTGTT 353
Query 498 AGAAGCAGTCCCAAAGTATCATGTGAGGTCTCTACTTGTACAAGTCAT-TTTTCGAGCAA 556
|||||||||||||||||||||||||||| |||||||||| |||||||| |||| || |||
Sbjct 354 AGAAGCAGTCCCAAAGTATCATGTGAGGCCTCTACTTGTCCAAGTCATATTTT-GACCAA 412
Query 557 AGTAGGAGAAGACTATGATGCGGCTGAATCCGAAAAGATGCATAACAAGGTAATCTCTTT 616
|||||||||| |||||| | ||||||||| |||||||||||||| ||||||||||||||
Sbjct 413 AGTAGGAGAAAACTATG-T--GGCTGAATCTGAAAAGATGCATAAAAAGGTAATCTCTTT 469
Query 617 ATCGAGTAAAACCTTGTCGTCAGACTACTCTCAGGGCATCCTTCAATTCACTATAAGAGC 676
||||| |||| | | | | ||||||||| | ||||||||||||||| |||||
Sbjct 470 CTCGAGCAAAA-C----C-T-----T-CTCTCAGGGAACCCTTCAATTCACTATGAGAGC 517
Query 677 CAATGGAACGCCTCATTTTGTTTTCAAATTGGAGAATCAAAAAGATGTATATGTGGCAAG 736
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 518 CAATGGAACACCTCATTTTGTTTTCAAATTGGAGAATCAAAAAGATGTTTATGTGGCAAG 577
Query 737 CTTAAGCAGCAATGTCCAAGACCAAAACTCGTATATGATCCATTTGCAAAGAGGAGAATC 796
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 578 CTTAAGCAGCAATGTCCAAGACCAAAACTCGTATATGATCCATCTGCAAAGAGGAGAATC 637
Query 797 AT-TGTCATCATCATCATATCCAGTTGGTAGAATAAATATATCGACTTTGTTCTCAGAGA 855
|| | |||| |||||| ||| |||||| ||||||||| |||| ||||||||||| ||||
Sbjct 638 ATCAG-CATCCTCATCACATCTAGTTGGGAGAATAAATGTATCTACTTTGTTCTCGGAGA 696
Query 856 AAATCTTAGAGAGACAGTTTGTTTTGTTCAGTAGCAATGGCGAGCATCTCAAGATACCGC 915
|| |||| |||||| ||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct 697 AAGTCTTGGAGAGAGAGTTTGTTTTGTTCAGTAGCAATGGTGAGAATCTCAAGATACCGC 756
Query 916 GTA-GTATGAAAAACAGAGGATTGTCTAAAAATGTAGTCCATGAGATCAAGAACGATAA- 973
||| | | ||||||||||||| |||||||||| |||||||||| | |||||||||| ||
Sbjct 757 GTACG-AGGAAAAACAGAGGACTGTCTAAAAAAGTAGTCCATGCGGTCAAGAACGA-AAG 814
Query 974 AAGAATC-TCAAGATTGAGCAGAACAAGCTTCATACCTGGTTTAGGTTCTTGGGATCAGC 1032
||||| | |||||||||||||||||||||||||||||| |||||||||||||||| |||
Sbjct 815 AAGAA-CAGCAAGATTGAGCAGAACAAGCTTCATACCTGATTTAGGTTCTTGGGATGAGC 873
Query 1033 AATTCCAAGAACCAAACTATGACCTTGAGAAGGTGAATCTGCT-AGAAAACAACCTTCCA 1091
||||||||| || ||||||||| | || |||||| | ||||||| ||||||
Sbjct 874 AATTCCAAGCACAAAACTATGA---T-------TG--TCTGCTCA-AAAACAAGCTTCCA 920
Query 1092 ACAAATCTTGAAACATTAGCTGTTGTTGTGAAACAAGAGACTCTTGAGGAAGAAATTGGA 1151
|||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct 921 ACAAATCTTGAAACATTAGCTGTTGTTGTGAAACAAGAGACTATTGAGGACGAAATTGGA 980
Query 1152 GGTTGGGGATTAAAGTTCTTGAAGAGATCGCCCATGGTCCAAAGAACTAATGATGCTACT 1211
|| |||||| ||||||||||||||||||| |||||| ||||||||| ||||||||||| |
Sbjct 981 GGATGGGGACTAAAGTTCTTGAAGAGATCTCCCATGTTCCAAAGAAGTAATGATGCTAGT 1040
Query 1212 GAGACTGAAACTACAACATCTTCGATGATAAGTATGAATGTTGTGATTTCTTCAGGGATT 1271
|||||||||||| |||||||||| | ||||||||||||||||||||| |||||||||||
Sbjct 1041 GAGACTGAAACTTCAACATCTTC-A--ATAAGTATGAATGTTGTGATTCCTTCAGGGATT 1097
Query 1272 CATGGAGGGCCTGAAGATGGACCTTTGAGTTTGATAGAGAGATGGAAATCTCAAGGAAAC 1331
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1098 CATGGAGGGCCTGAAGATGGACCTTCGAGTTTGATAGAGAGATGGAAATCTCAAGGAAAT 1157
Query 1332 TGTGACTGTGGAGGATGGGACTTGGGTTGTTCCCTAACGCTTCTTAAAGGCCAACCACAG 1391
|||||||||||||||||||| ||| |||||||| | || ||||||||||||||||||| |
Sbjct 1158 TGTGACTGTGGAGGATGGGATTTGTGTTGTTCCTTGACCCTTCTTAAAGGCCAACCACGG 1217
Query 1392 AAAGACCAG---TTCGAGCTACTCAAAGAGGGTTCAAAGCATGAAACGAGTGGATTAAAG 1448
||||||||| ||||| ||| ||| |||||| ||||| |||||||| | ||| |||||
Sbjct 1218 AAAGACCAGTACTTCGAACTATTCATAGAGGGGTCAAAACATGAAACAACAGGACTAAAG 1277
Query 1449 ATTGTGAATGTTAGTGGAGGAGTCTACTTAGTTCAATTCGAAGGAAAGTTGACTAGTCTG 1508
||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct 1278 ATTGTGAATGTTAGTGGAGGACTCTACTTAGTTCAATTCGAAGCAAAGTTGACTAGTCTG 1337
Query 1509 CAATCATTTGCAATTGCTTTGGCATTCATACATAGCCAGAAGCGCTTAGACCGTTGCATC 1568
|||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct 1338 CAATCATTTGCAATTGCTTTGGCATTCATACATAGCGAGAAGC--TTAGACCGTTGCATC 1395
Query 1569 T-TACATATTT 1578
| ||| |||||
Sbjct 1396 TATACGTATTT 1406
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80622075270
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5