BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470432
Length=1411
Score E
Sequences producing significant alignments: (Bits) Value
AT1G04520.1 | Symbols: PDLP2 | plasmodesmata-located protein 2 ... 1873 0.0
AT2G33330.1 | Symbols: PDLP3 | plasmodesmata-located protein 3 ... 806 0.0
> AT1G04520.1 | Symbols: PDLP2 | plasmodesmata-located protein
2 | chr1:1231578-1234032 FORWARD LENGTH=1443
Length=1443
Score = 1873 bits (1014), Expect = 0.0
Identities = 1125/1179 (95%), Gaps = 6/1179 (1%)
Strand=Plus/Plus
Query 233 aaaaaTGGGTCTTTCAATCTCATTCCTCAACATCATCTTGATGATGTCTCTGCTGTTTCC 292
||||||||||||||||||||||||||||| ||||||| ||||||||| ||| ||||||||
Sbjct 271 AAAAATGGGTCTTTCAATCTCATTCCTCAGCATCATCATGATGATGTGTCTACTGTTTCC 330
Query 293 AGATCTCAATGTCGTAGTAGAATCTGCAACAACGGAATACACAACCTTAATCTACAAAGG 352
||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct 331 AGATCTCAATGTCGTAGTAAAATCTGCTACAACGGAATACACAACCTTAATCTACAAAGG 390
Query 353 ATGTGCAAGACAGCAATTCTCAGATCCATCTGGTTTATACTCACAAGCTCTCTCTGCTAT 412
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 391 ATGTGCAAGACAACAATTCTCAGATCCATCTGGTTTATACTCACAAGCTCTCTCTGCTAT 450
Query 413 GTTCGGCTCATTGGTCTCGCAGTCTACTAAAACCAGATTCTACAAGACCACAACGGGAAC 472
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 451 GTTCGGCTCATTGGTCTCTCAGTCTACTAAAACCAGATTCTACAAGACCACAACAGGAAC 510
Query 473 AAGCACAACTACAATCACTGGTCTGTTCCAGTGCAGAGGAGATTTAAGCAACCATGACTG 532
||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 511 AAGCACAACCACAATCACTGGTCTGTTCCAGTGTAGAGGAGATTTAAGTAACCATGACTG 570
Query 533 TTACAACTGTGTTAGTCGTCTTCCTGTTCTCTCCGACAAGCTCTGTGGCAAAACCATTGC 592
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 571 TTACAACTGTGTTAGTCGTCTTCCTGTTCTCTCCGACAAGCTATGTGGCAAAACCATTGC 630
Query 593 TTCAAGAGTTCAACTTTCCGGCTGTTATCTTCTCTATGAAGTTGCTGGCTTTTCTCAAAT 652
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 631 TTCAAGAGTTCAACTTTCCGGCTGTTATCTTCTCTATGAAGTTTCTGGCTTTTCTCAAAT 690
Query 653 TTCAGGGATGGAGATGTTGTTCAAGACCTGCGGGAAGAGCAACATCGCCGGAACAGGGTT 712
|||||||||||||||| |||||||||| || ||||||| |||||||||||||||||||||
Sbjct 691 TTCAGGGATGGAGATGCTGTTCAAGACTTGTGGGAAGAACAACATCGCCGGAACAGGGTT 750
Query 713 CGAAGAGAGAAGAGACACGGCGTTTGGGGTGATGCAAAACGGCGTAGTATCAGGCCATGG 772
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 751 CGAAGAGAGAAGAGACACGGCGTTCGGGGTGATGCAAAACGGCGTAGTATCAGGCCATGG 810
Query 773 ATTCTACGCTACTACGTACGAATCTGTCTACGTTTTAGGACAATGCGAAGGCGATGTCGG 832
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 811 ATTCTACGCTACTACGTACGAATCTGTCTACGTTTTAGGACAATGCGAAGGAGATGTCGG 870
Query 833 AGACACCGATTGCAGCGGATGCATAAAAAATGCACTCGAGAAAGCTCAGGTGGAATGTGG 892
|||||||||||| |||||||| | || || ||||| |||||||||||||||||||||||
Sbjct 871 AGACACCGATTGTAGCGGATGTGTTAAGAACGCACTTGAGAAAGCTCAGGTGGAATGTGG 930
Query 893 AAGCTCAATCTCCGGTCAGATTTACCTCCATAAGTGTTTCATCGCTTATAGTTATTACCC 952
||||||||||||||| |||||||| || ||||||||||||||||||||||||||||||||
Sbjct 931 AAGCTCAATCTCCGGACAGATTTATCTACATAAGTGTTTCATCGCTTATAGTTATTACCC 990
Query 953 AAATGGTGTCCCCAGGAGAtcttcttcttcttcatcttcgtcttcttcctccagctctgg 1012
||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 991 AAATGGTGTCCCCAGAAGATCTTCTTCTTCTTCATCTTCGTCTTCATCCTCCAGTTCTGG 1050
Query 1013 ctcttcaaattcagatccttcgtcttctACAGGAGCAACAGGGAAGACGGTGGCAATAAT 1072
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1051 CTCTTCAAATTCAGATCCTTCCACTTCTACAGGAGCAACAGGGAAGACGGTGGCAATAAT 1110
Query 1073 AGTAGGAGGAGCAGCTGGTGTTGGCTTTCTTGTCATTTGCTTACTTTTTGCCAAAAACTT 1132
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1111 AGTAGGAGGAGCAGCTGGTGTTGGCTTTCTTGTCATTTGCTTGCTTTTTGCCAAAAACTT 1170
Query 1133 GATGAGGAAGAAACATGACGACTATTGAAAGATGGAGGGGAAGAGAACAAAAGGTGTCCA 1192
||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||
Sbjct 1171 GATGAGGAAGAAACATGACGACTATTGAAAGATGGAGAGGAAGAGAACAAAAGGAGTCCA 1230
Query 1193 ATCCCTCATAAGAGAGGCACAAGTTTAATTTTTCTTTCTTTGAGGCTATTAATTCCCAAG 1252
||||||||| ||| ||||||||||||||||||||| |||||||||||||||||| |||||
Sbjct 1231 ATCCCTCATGAGATAGGCACAAGTTTAATTTTTCTCTCTTTGAGGCTATTAATTTCCAAG 1290
Query 1253 TCCAAACTTTTAAATTTCCATaaaaaaaTTGTTATTATATTATATTTTCTTTGTATTAGT 1312
|||||||||| ||||||| || |||| ||||||||||||||||| ||||||||||||||
Sbjct 1291 TCCAAACTTTAAAATTTC-ATGAAAA--TTGTTATTATATTATATCTTCTTTGTATTAGT 1347
Query 1313 TCAGATTATTGGGAGGTAGGAATTTCTTCTGGTGGATGAAAAAATGTGAACAAAAAAGAA 1372
|||||||||||| |||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 1348 TCAGATTATTGGAAGGTAGGAATTTGT---GGTGGATGAAAAAATGTGAACAAAAAAGAA 1404
Query 1373 TTTTGTTTTTCCCAATCAATTACACTAACTATTCCAACT 1411
||||||||||| |||||||||||||||||||||||||||
Sbjct 1405 TTTTGTTTTTCTCAATCAATTACACTAACTATTCCAACT 1443
Score = 302 bits (163), Expect = 8e-81
Identities = 218/241 (90%), Gaps = 18/241 (7%)
Strand=Plus/Plus
Query 1 TCTCCTCTCACATGGTCATC---A---AAAGCCAAAGCC-aaaaaaaCAAAGAACCCAGA 53
|||||||||||||||||||| | |||||||||||| ||||||||||||||||||||
Sbjct 1 TCTCCTCTCACATGGTCATCAAAAGCCAAAGCCAAAGCCAAAAAAAACAAAGAACCCAGA 60
Query 54 AACCTAGAAGACAGACACAAAAATTAAAGCTTTACTGAGCCACCAAGCAACCAATTACA- 112
||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 61 AACCTAGAAGACAGAAACAAAAATCAAAGCTTTACTGAGCCACCAAGCAACCAATTACAT 120
Query 113 CAAACTCAAAAACCCATAAAACCAAAACACTCCCACAAAGATTCCATCTTTCAATATCTC 172
||| ||| ||||||||||||||||| ||| | || |||||||||||||||||||||
Sbjct 121 CAA-CTCTAAAACCCATAAAACCAA--CAC----A-AA-GATTCCATCTTTCAATATCTC 171
Query 173 TACAATGAGAAAGCCAATGCTTTGATTTTT-CCCCCAATCTTTCTTCCAACAAACCTCaa 231
|||||||||||||||||||||||||||||| ||||||||||||||||||| | |||||||
Sbjct 172 TACAATGAGAAAGCCAATGCTTTGATTTTTTCCCCCAATCTTTCTTCCAAGATACCTCAA 231
Query 232 a 232
|
Sbjct 232 A 232
> AT2G33330.1 | Symbols: PDLP3 | plasmodesmata-located protein
3 | chr2:14122890-14125137 REVERSE LENGTH=1315
Length=1315
Score = 806 bits (436), Expect = 0.0
Identities = 775/932 (83%), Gaps = 50/932 (5%)
Strand=Plus/Plus
Query 285 CTGTTTC-CAGATCTCAATGTCGTAGTAGAATCTGCAACAACGGAATACAC-AACCTTAA 342
||| ||| |||||||||| | | ||| | ||||| | || | || ||||| |||| |||
Sbjct 164 CTG-TTCTCAGATCTCAA-G-C-TAGCAAAATCTTCTTCACCAGAGTACACGAACC-TAA 218
Query 343 TCTACAAAGGATGTGCAAGACAGCA-ATTCTCAGATCCATCTGGTTTATACTCACAAGCT 401
|||||||||| |||||||||||| | ||| ||||||||||||||||||||||||||||||
Sbjct 219 TCTACAAAGGTTGTGCAAGACAG-AGATTATCAGATCCATCTGGTTTATACTCACAAGCT 277
Query 402 CTCTCTGCTATGT-TCGGCTCATTGGTCT-CGCAGTCTACTAAAACCAGATTCTACAAGA 459
|||||||| |||| | |||| |||||| | | || || || ||||| ||||||||||| |
Sbjct 278 CTCTCTGCAATGTAT-GGCTTATTGGT-TACTCAATCAACGAAAACAAGATTCTACAAAA 335
Query 460 CCACAAC-GG--GAACAAG-CACAACTA-CAATCACTGGTCTGTTCCAGTGCAGAGGAGA 514
||||||| || |||||| || ||| | | |||||||||| |||||||| ||||||||
Sbjct 336 CCACAACTGGAACAACAAGCCA-AACAAGC-GTCACTGGTCTTTTCCAGTGTAGAGGAGA 393
Query 515 TTTAAGCAACCATGACTGTTACAACTGTGTTAGTCGTCTTCCTGTTCTCTCCGACAAGCT 574
|||||| ||| | |||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 394 TTTAAGTAACAACGACTGTTACAACTGTGTTAGTCGTCTTCCTGTTCTCTCTGGTAAGCT 453
Query 575 CTGTGGCAAAACCATTGCTTCAAGAGTTCAACTTTCCGGCTGTTATCTTCTCTATGAAGT 634
||||||||||||||||||| | |||||||| || |||||||||||||||||||||||| |
Sbjct 454 CTGTGGCAAAACCATTGCTGCTAGAGTTCAGCTCTCCGGCTGTTATCTTCTCTATGAAAT 513
Query 635 -TGCTGGCTTTTCTCAAATTTCAGGGATGGAGATGTTGTTCAAGACCTGCGGGAAGAGCA 693
| |||||||| | ||||||||||| |||||| |||| |||||||| || ||||||| ||
Sbjct 514 CT-CTGGCTTTGCCCAAATTTCAGGAATGGAGTTGTTATTCAAGACATGTGGGAAGAACA 572
Query 694 ACATCGCCGGAACAGGGTTCGAAGAGAGAAGAGACACGGCGTTT-GGGGTGATGCAAAAC 752
|| ||||||| ||||| |||||| ||||||||||||| || ||| |||||||||||||||
Sbjct 573 ACGTCGCCGGGACAGGATTCGAACAGAGAAGAGACACAGC-TTTCGGGGTGATGCAAAAC 631
Query 753 GGCGTAGTATCA-GGCCATGGATTCTACGCTACTACGTACGAATCTGTCTACGTTTTAGG 811
||||| || ||| || || || |||||||| || || |||||||| || |||||||||||
Sbjct 632 GGCGTCGT-TCAAGGTCACGGCTTCTACGCAACGACATACGAATCGGTTTACGTTTTAGG 690
Query 812 ACAATGCGAAGGCGATGTCGGAGACACCGATTGCAGCGGATGCATAAAAAATGCACT-CG 870
|||||||||||||||| | || || | ||||| ||||| ||||||||||| || | |
Sbjct 691 ACAATGCGAAGGCGATATAGGCGATTCAGATTGTAGCGGTTGCATAAAAAACGCGTTAC- 749
Query 871 AGAAAGCTCAGGTGGAATGTGGAAGCTCAATCTCCGGTCAGATTTACCTCCATAAGTGTT 930
||| |||||| || ||||||||||||||||| || |||||||| || || ||||||||||
Sbjct 750 AGAGAGCTCAAGTCGAATGTGGAAGCTCAATATCTGGTCAGATATATCTTCATAAGTGTT 809
Query 931 TCATCGCTTATAGTTAT-TACCCAAATGGTGTCCCCAGGAGAtcttcttcttcttcatct 989
| ||| |||||||| | |||||||||||||| |||| |||||||||| | ||| |||
Sbjct 810 TTGTCGGTTATAGTT-TCTACCCAAATGGTGTTCCCAAGAGATCTTCT-C--CTT-ATCC 864
Query 990 tcgtcttcttcctccagctctggctcttcaaattcagatccttcgtcttctACAGGAGCA 1049
| | || || ||| || || ||||| ||| || ||| |||||| ||||| ||
Sbjct 865 TAG-CT-CTGGCTCT---TCGGGTTCTTC---TTCT--TC-TTCATCTTCTTCAGGAACA 913
Query 1050 ACAGGGAAGACGGTGGCAATAATAGTAGGAGGAGCAGCTGGTGTTGGCTTTCTTGTCATT 1109
||||| || |||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 914 ACAGGCAAAACGGTGGCAATAATAGTAGGAGGAACAGCTGGTGTTGGATTTCTTGTCATT 973
Query 1110 TGCTTACTTTTTGCCAAAAACTTGATGAGGAAGAAACATGACGACTATTGAAAG-A-TGG 1167
||||||||||| | |||||||||||||| ||||||| ||||||| |||||||| | |
Sbjct 974 TGCTTACTTTTCGTCAAAAACTTGATGAAGAAGAAATATGACGATTATTGAAAATAATT- 1032
Query 1168 AGGG-GAAGAGAACAAAAGGTGTCC-AATCCC 1197
||| ||||| ||||||| | |||| || |||
Sbjct 1033 AGGATGAAGACAACAAAATGAGTCCCAACCCC 1064
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69527754825
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5