BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470433
Length=1286
Score E
Sequences producing significant alignments: (Bits) Value
AT1G04530.1 | Symbols: TPR4 | Tetratricopeptide repeat (TPR)-li... 1685 0.0
> AT1G04530.1 | Symbols: TPR4 | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:1234176-1236034 REVERSE LENGTH=1352
Length=1352
Score = 1685 bits (912), Expect = 0.0
Identities = 1046/1110 (94%), Gaps = 12/1110 (1%)
Strand=Plus/Plus
Query 1 TCTTCGTTCGGTCGTTGTCTTGGGGTCCTCCGAATCAA-AACCCACAAATAACACTCGAG 59
|||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct 5 TCTTCGTTTGGTCGTTGTCTTGGGGTCCTCCGAATCAAGAACCCACAAATAACAATCGAG 64
Query 60 GAATCTGTGAACGACGACCCAATTGAACCTAAAGTTGAAGACTTTGAACGGATTTAGAAA 119
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 65 GAATCTGTGAACGACGACCCAATTGAACCTAAAGTTGAAGACTTTGGACGGATTTAGAAA 124
Query 120 GAAAAACACAAAAAGATGCTGAAGAGCGAGGCCTCTCTCTCGAGTTACTGCGATTCCGGA 179
|||| || |||||||||||||||||||||||| |||||||||| ||||||||| || |||
Sbjct 125 GAAAGACCCAAAAAGATGCTGAAGAGCGAGGCATCTCTCTCGATTTACTGCGACTCTGGA 184
Query 180 GATGGGTTCAAATCCGAAGATCCGTTGACTGGAATCGAGGAGAATTTGGAGAGAACCGTT 239
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 185 GATGGGTTCAAATCCGAAGATCCGGTGACTGGAATCGAGGAGAATTTGGAGAGAACGGTT 244
Query 240 ACGATTGGCGATTCTATCGACGGCGACGGGTTCAGTTTTGCGAAACACAAGGAAGAAGAT 299
|||||||| ||| |||| ||||||| || |||||||||||||||||||||||||||||||
Sbjct 245 ACGATTGGTGATGCTATTGACGGCGGCGAGTTCAGTTTTGCGAAACACAAGGAAGAAGAT 304
Query 300 AGCAGTGAAGGTGAGAGAGGTGTTTTGGAAGAGGTTATTAAGAAGCTAGGGATTGGTAAG 359
|| |||||||||||||||||||||| |||||||||||||||||||| ||||||||| |
Sbjct 305 AGTGGTGAAGGTGAGAGAGGTGTTTTTGAAGAGGTTATTAAGAAGCTTGGGATTGGTGTG 364
Query 360 AGAGATGAACAAGGTTTTGAGATTGAAAGACCACCAAGTCCTCCTATGCATTTAGCTGCA 419
|||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 365 AGAGATGAACTAGGTTTTGAGATTGAAAGACCACCAAGCCCTCCTATGCATTTAGCTGCA 424
Query 420 GGGTTAGGTATTGATAAGTTTGATTTGTATGGTAATGAGA-CGAAATTCGACTTACCGGG 478
|||||||| ||||||||||||||||||||||||| ||||| | |||||||| || |||||
Sbjct 425 GGGTTAGGAATTGATAAGTTTGATTTGTATGGTAGTGAGATC-AAATTCGATTTGCCGGG 483
Query 479 TTTCGATGATGAGAATTGTGGTGATTACTACAAAGGAATGCTCGAGGAGTATCCATTGCA 538
|| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 484 TTACGATGATAAGAATTGTGGTGATTACTACAAAGGAATGCTCGAGGAGTATCCATTGCA 543
Query 539 TCCTTTGCTTCTCAAAAACTATGCCAAGTTCTTGGAGTATAAAGGAGATCTTAGTGGAGC 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 544 TCCTTTGCTTCTCAAAAACTATGCCAAGTTCTTGGAGTATAAAGGAGATCTTAGTGGAGC 603
Query 599 AGAAGAGTATTATCATAAGTGTACTGTAGTTGAGCCTTGTGATGGAGTAGCTTTAGCAAA 658
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 604 AGAAGAGTATTATCATAAGTGTACTGTAGTTGAGCCTAGTGATGGAGTAGCTTTAGCAAA 663
Query 659 CTATGGTAGATTAGTAATGAAGCTTCACCAAGATGAAGCTAAAGCCATGAGCTACTTTGA 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 664 CTATGGTAGATTAGTAATGAAGCTTCACCAAGATGAAGCTAAAGCCATGAGCTACTTTGA 723
Query 719 ACGTGCAGTTCAAGCTTCTCCTGATGATAGCAATGTTCTTGGAGCATATGCTAGTTTCCT 778
||||||||||||||| |||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 724 ACGTGCAGTTCAAGCATCTCCTGATGATAGCATTGTTCTTGCAGCATATGCTAGTTTCCT 783
Query 779 CTGGGAGATAAACGTGgatgacgacgatgaggatgatgatga---tgatga-G--TCTTC 832
|||||||||||||| |||||| || ||||||||||||||||| |||||| | |||||
Sbjct 784 CTGGGAGATAAACGCGGATGATGATGATGAGGATGATGATGAGGATGATGATGAGTCTTC 843
Query 833 TGGGCAAGGAAAAGAAGAATTTGAGCCTGATGCAGCGGAGAAAAG-CAACTCGAGCTTGT 891
||| ||||||||||| ||||||||| |||||||||||| |||||| ||| || |||||||
Sbjct 844 TGGACAAGGAAAAGACGAATTTGAGGCTGATGCAGCGG-GAAAAGGCAAATCAAGCTTGT 902
Query 892 CCAAGACAGATGATGGAGAAACGCTATGCAGATACGCGAAAGCGTTCTGGAGTATAAATA 951
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 903 CCAAGACAGAAGATGGAGAAACGCTATGCAGATACGCGAAGGCGTTCTGGAGTATTAATA 962
Query 952 ATGACCACGAGAAGGCCTTGTTCTACTTTGAGAAGGCCGTTGAAGCCTCTCCAAATGACA 1011
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 963 ATGACCATGAGAAGGCCTTGTTCTACTTTGAGAAGGCCGTTGAAGCCTCTCCAAATGATA 1022
Query 1012 GCATTATTCTTGGAGAGTATGCTCGGTTTTTATGGGAAATAGAAGAATGATCATTAAGAA 1071
||||||||||||||||||| |||||||| |||||||||||||| |||||| ||| |||||
Sbjct 1023 GCATTATTCTTGGAGAGTACGCTCGGTTCTTATGGGAAATAGATGAATGACCATCAAGAA 1082
Query 1072 GAGAAAGAAGATGTCTATAGCTGAGGTAAA 1101
||||| ||||||||||||||||||||||||
Sbjct 1083 GAGAA-GAAGATGTCTATAGCTGAGGTAAA 1111
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63252686700
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5