BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470436
Length=1153
Score E
Sequences producing significant alignments: (Bits) Value
AT1G04550.2 | Symbols: IAA12, BDL | AUX/IAA transcriptional reg... 1598 0.0
> AT1G04550.2 | Symbols: IAA12, BDL | AUX/IAA transcriptional regulator
family protein | chr1:1240375-1242121 FORWARD LENGTH=1238
Length=1238
Score = 1598 bits (865), Expect = 0.0
Identities = 982/1038 (95%), Gaps = 10/1038 (1%)
Strand=Plus/Plus
Query 116 GTATCTTTGGAGTCTAGGGTTTTGTTATTGACATGCGTGGTGTTTCAGAATTGGAGGCGG 175
||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct 176 GTATCATTGGAGTCTAGGGTTTTGTTATTGACATGCGTGGTGTGTCAGAATTGGAGGTGG 235
Query 176 GGAAGTGTAATCTTCCGGCTGAGAGTGAGCTGGAATTGGGATTAGGGCTCAGCCTCGGCG 235
||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 236 GGAAGAGTAATCTTCCGGCGGAGAGTGAGCTGGAATTGGGATTAGGGCTCAGCCTCGGTG 295
Query 236 GTGGCGCGTGGAAAGAGCGTGGGAGGATTCTTACGGCTAAGGATTTTCCTTCGGTTGGGT 295
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 296 GTGGCGCGTGGAAAGAGCGTGGGAGGATTCTTACTGCTAAGGATTTTCCTTCCGTTGGGT 355
Query 296 CTAAACGCTCTGCTGAGTCGTCCTCTCATCAAGGAGCTTCTCCTCCTCGTTCAAGTCAAG 355
|||||||||||||||| || |||||||| |||||||||||||||||||||||||||||||
Sbjct 356 CTAAACGCTCTGCTGAATCTTCCTCTCACCAAGGAGCTTCTCCTCCTCGTTCAAGTCAAG 415
Query 356 TAGTGGGATGGCCACCAATTGGGTCACACAGGATGAATAGTTTGGTTAATAACCAAGCTA 415
| || ||||||||||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct 416 TGGTAGGATGGCCACCAATTGGGTTACACAGGATGAACAGTTTGGTTAATAACCAAGCTA 475
Query 416 TGAAGGCAGCAAGAGCGGAAGAAGAAGACGGGGAGAAGAATGTCGTGAAGAATGATGAGC 475
|||||||||||||||||||||||| ||||||||||||||| || ||||||||||||||||
Sbjct 476 TGAAGGCAGCAAGAGCGGAAGAAGGAGACGGGGAGAAGAAAGTTGTGAAGAATGATGAGC 535
Query 476 TCAAAGATGTGTCAATGAAGGTGAATGGGAAAGTTCAGGGCTTAGGGTTTGTTAAGGTGA 535
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 536 TCAAAGATGTGTCAATGAAGGTGAATCCGAAAGTTCAGGGCTTAGGGTTTGTTAAGGTGA 595
Query 536 ATATGGATGGAGTTGGTATAGGCCGAAAAGTGGATATGAGAGCCCAGTCCTCTTACGAAA 595
||||||||||||||||||||||| ||||||||||||||||||| || || ||||||||||
Sbjct 596 ATATGGATGGAGTTGGTATAGGCAGAAAAGTGGATATGAGAGCTCATTCGTCTTACGAAA 655
Query 596 ACTTGGCTCAGACGCTTGAGGAAATGTTCTTTGGAATGACAGGTACTACTTCTCGAGAAA 655
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 656 ACTTGGCTCAGACGCTTGAGGAAATGTTCTTTGGAATGACAGGTACTACTTGTCGAGAAA 715
Query 656 AGGTTAAACCTTTAAGGCTTTTAGATGGATCATCAGACTTTGTACTCACTTATGAAGATA 715
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 716 AGGTTAAACCTTTAAGGCTTTTAGATGGATCATCAGACTTTGTACTCACTTATGAAGATA 775
Query 716 AGGAAGGCGATTGGATGCTTGTGGGCGATGTTCCATGGAGAATGTTTATCAACTCGGTGA 775
||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 776 AGGAAGGGGATTGGATGCTTGTTGGAGATGTTCCATGGAGAATGTTTATCAACTCGGTGA 835
Query 776 AAAGGCTTCGGATCATGGGAACCTCAGAAGCTAGTGGACTAGCTCCAAGACATCAAGAAC 835
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct 836 AAAGGCTTCGGATCATGGGAACCTCAGAAGCTAGTGGACTAGCTCCAAGACGTCAAGAGC 895
Query 836 AGAAGGATAGACAAAGAAACAAACCTGTTTAGCTTCCCTTCCAAAGCTGGCATTGTTTAT 895
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 896 AGAAGGATAGACAAAGAAACAACCCTGTTTAGCTTCCCTTCCAAAGCTGGCATTGTTTAT 955
Query 896 GTGttttttttttttttGAGGTTTGCAAGTTTACTCAATACTTTTGGAAGAAAGTATAAC 955
|| || ||| ||||||||||| ||||||| |||||||| |||||||||||
Sbjct 956 GTATTGTTT--------GAGGTTTGCAA-TTTACTCGATACTTTTTGAAGAAAGTATTTT 1006
Query 956 GGAGAATATGGATAAAAGCATGCAGAAGCTTAGATTTGATTTTAATCCGGTTTTCGGATA 1015
||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||
Sbjct 1007 GGAGAATATGGATAAAAGCATGCAGAAGCTTAGATATGATTTGAATCCGGTTTTCGGATA 1066
Query 1016 TGGTTTTTCTTTAGGTCATTCAATTCGTAGTTTTCCAGTTTGTTTCTTCTTTGGCTGTGT 1075
||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1067 TGGTTTTGCTT-AGGTCATTCAATTCGTAGTTTTCCAGTTTGTTTCTTCTTTGGCTGTGT 1125
Query 1076 ACCAATTGTCTCTGTTCTGAGAGAGAATGCTCTTGTTTATTTGTTCTCTCATATTGTAAA 1135
||||||| ||| ||||||| ||||||| ||||||||||||||||||||||| ||||||||
Sbjct 1126 ACCAATTATCTATGTTCTGTGAGAGAAAGCTCTTGTTTATTTGTTCTCTCAGATTGTAAA 1185
Query 1136 TAGTTGAAGTTATCTAAT 1153
||||||||||||||||||
Sbjct 1186 TAGTTGAAGTTATCTAAT 1203
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56576014215
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5