BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470437
Length=840
Score E
Sequences producing significant alignments: (Bits) Value
AT1G04555.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 846 0.0
> AT1G04555.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: cellular_component unknown; BEST Arabidopsis
thaliana protein match is: unknown protein (TAIR:AT4G33380.1);
Has 84 Blast hits to 83 proteins in 15 species: Archae
- 0; Bacteria - 0; Metazoa - 9; Fungi - 0; Plants - 75; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:1242558-1244244
FORWARD LENGTH=939
Length=939
Score = 846 bits (458), Expect = 0.0
Identities = 679/775 (88%), Gaps = 57/775 (7%)
Strand=Plus/Plus
Query 112 TTTGGAAGT-GGATAATGGATCATCAATGGCGTATGAGGTTTTCGTTCAAGAACGCCACA 170
||||||| | ||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 172 TTTGGAA-TAAGATAATGGATCATCAATGGCGCATGAGGTTTTCGTTCAAGAACGCAACA 230
Query 171 ATTGCTCTCACAGTCGTCAACGttctcatcttcctcttcctccttcagggctttttcact 230
||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 231 ATTGCTCTCACTGTCATCAACGTTCTCATCTTCCTCTTCCTCCTTCAGGGCTTTTTCACT 290
Query 231 tcatcatcatcct-catcttcttcttcctcctctcGCCGACTCATTTCAGCTCAGCTTCG 289
|| || || | || ||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 291 TCCTCCTC-TTCTCCATCTTCTTCTTCTTCTTCTCGCCGACTCATTTCAGCTCAGCTTCG 349
Query 290 GTATATCAAGGAAGCTGAAGAGA-TTAGGCTCAAGATGCAACCTTTAGAGCTCATTAAAA 348
||||||||||||||| ||||| | ||||||||||||||||||||||||||||||| | ||
Sbjct 350 GTATATCAAGGAAGCCGAAGA-ACTTAGGCTCAAGATGCAACCTTTAGAGCTCATCAGAA 408
Query 349 GAGTCCGAGAAATCGAACAGGAGGCATCTGCGGGACAAGAAACCGAGCAGCAGAAAGATG 408
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 409 GAGTCCGAGAAATCGAACAAGAGGCATCTGCGGGACAAGAAACCGAGCAGCAGAAAGATG 468
Query 409 TGAAGCAGACTACAGCCGTTGATCTCTCTAAACGGCTCAAGGATTTCCGTGCGCTAAACG 468
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 469 TGAAGCAGACTACAGCCGTTGATCTCTCTAAACGACTGAAGGATTTCCGTGCGCTAAACG 528
Query 469 ATGCATCAAGTTTGAAAGCATTGGAAGAATGGCGAAAGCGGAAAATGGAACGAGCAAGAC 528
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 529 ATGCATCGAGCTTGAAAGCATTGGAAGAATGGCGAAAGCGGAAAATGGAACGAGCAAGAC 588
Query 529 AACGGGATCTTGGGAAAACCGGAGGAGTTTC---GTCCATCAAAACATCATCATAA---T 582
|||||||||||| |||||||||||||||||| ||||| |||||||||||||||| |
Sbjct 589 AACGGGATCTTGAGAAAACCGGAGGAGTTTCTTCGTCCACCAAAACATCATCATAAACGT 648
Query 583 -A-T----CG-TAAA-AT--TA---TT---GAACATTTGTAAGTCTCATA-AAAGAATCA 625
| | | |||| || || || ||||||| ||||||||||| ||| ||| |
Sbjct 649 CACTAATTCTCTAAATATCATAAAATTATTGAACATTA-TAAGTCTCATAGAAAAAATTA 707
Query 626 TACT-A---GTGTAAAGACAGACAGA-ATGCTGGAAAC-----A---CA--GGAAAAGAA 670
|||| | ||||||||||||||||| ||||||||||| | || |||||||||
Sbjct 708 TACTTACTAGTGTAAAGACAGACAGAGATGCTGGAAACCTGTCAAAACACAGGAAAAGAA 767
Query 671 AAGAA-GGAAATCAAATTTTAC-CAAGTAAGATTTTTCATCACACAACT-GTTTTTTGGT 727
||||| ||| || | | |||| || ||||||||||| | ||||| || || |||||||
Sbjct 768 AAGAAAGGATATGTA-TGTTACTCA-GTAAGATTTTTAA--ACACA-CTTGTGTTTTGGT 822
Query 728 CAATTCATCCAATA-ACCTCAATTATATAGTCTGGTGTGCCTCCGCAGCTCCAA-TTTAT 785
||||||||| |||| |||| ||| ||||||||||||| || ||||||| || |||||
Sbjct 823 CAATTCATCAAATATACCTTAATCATATAGTCTGGTGC-CCAGTGCAGCTC-AAGTTTAT 880
Query 786 GGTCATCACCATTGTGGCCGGTATCAGTCATCTTTATTACATAACTTTGATTCAT 840
||||||||||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct 881 GGTCATCACCATTGTGGCCTGTATCAGTCATCTTTATTACATAAATTTGATTCAT 935
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40940829805
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5