BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470444
Length=1699
Score E
Sequences producing significant alignments: (Bits) Value
AT1G04610.1 | Symbols: YUC3 | YUCCA 3 | chr1:1279388-1281618 FO... 2663 0.0
> AT1G04610.1 | Symbols: YUC3 | YUCCA 3 | chr1:1279388-1281618
FORWARD LENGTH=1737
Length=1737
Score = 2663 bits (1442), Expect = 0.0
Identities = 1637/1726 (95%), Gaps = 33/1726 (2%)
Strand=Plus/Plus
Query 1 ACACACATACACTTACATCTCCATCCTCTTGTCCTAAAAAGCTTCCCAAATCtttttttt 60
||||||||||||||||||||||||||||||||| ||||||| |||| |||||||| ||||
Sbjct 1 ACACACATACACTTACATCTCCATCCTCTTGTCTTAAAAAGTTTCCAAAATCTTTCTTTT 60
Query 61 ttCTTCTTCTACAATCTCAAAATTTCTTCTGTTTTCTCCTCACAACCAGACAAGCAAACT 120
||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TTCTTCTTCTACATTCTTAAAATTTCTTCTGTTTTCTCCTCACAACCAGACAAGCAAACT 120
Query 121 CTAAACTCTGTGGAAGATGTATGGAAATAATAACAAGAAGTCTATCAACATCTCGAGTAT 180
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 121 CTAAACTCTGTGGAAGATGTATGGAAATAATAACAAGAAGTCTATCAACATCACGAGTAT 180
Query 181 GTTTCAAAACCTCATCCCCGACGGCAGCGACATTTTCTCCCGGCGTTGCATCTGGGTCAA 240
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 181 GTTTCAAAACCTCATCCCCGAAGGCAGCGACATTTTCTCCCGGCGTTGCATCTGGGTCAA 240
Query 241 CGGACCGGTCATCGTTGGAGCTGGCCCATCAGGTCTAGCCGTTGCTGCGGGATTGAAACG 300
||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 241 TGGACCCGTCATCGTCGGAGCTGGCCCATCAGGTCTAGCCGTTGCTGCGGGCTTGAAACG 300
Query 301 TGAAGGAGTACCGTTCATAATCCTCGAGCGAGCTAACTGCATTGCTTCATTATGGCAAAA 360
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TGAAGGGGTACCATTCATAATCCTCGAGCGAGCTAACTGCATTGCTTCATTATGGCAAAA 360
Query 361 CAGAACCTACGATCGTCTCAAACTCCATCTCCCTAAACAGTTTTGCCAATTACCCAATTA 420
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 361 CAGAACCTACGATCGTCTCAAACTCCATCTACCTAAACAGTTTTGCCAATTACCCAATTA 420
Query 421 TCCTTTCCCGGACGAGTTCCCTGAGTACCCTACCAAGTTTCAGTTTATTCAGTACCTTGA 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TCCTTTCCCGGACGAGTTCCCTGAGTACCCTACCAAGTTTCAGTTTATTCAGTACCTTGA 480
Query 481 GTCCTACGCAGCCAACTTTGACATCAACCCTAAGTTCAACGAGACAGTCCAGTCCGCAAA 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 481 GTCCTACGCAGCCAACTTTGACATCAACCCTAAGTTCAACGAGACAGTCCAGTCCGCTAA 540
Query 541 ATACGACGAGACGTTCGGGCTGTGGCGGGTTAAGACCATTTCGAAGATGGGTCAGCTCGG 600
||| || ||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 541 ATATGATGAGACGTTCGGGCTGTGGCGGGTTAAGACCATTTCAAACATGGGTCAGCTCGG 600
Query 601 TTCTTGCGAGTTTGAGTATATCTGCAGGTGGATTGTGGTGGCCACGGGAGAGAATGCTGA 660
||||||||||||||||||||| ||||| |||||||||||||| ||||||||||| |||||
Sbjct 601 TTCTTGCGAGTTTGAGTATATATGCAGATGGATTGTGGTGGCAACGGGAGAGAACGCTGA 660
Query 661 GAAAGTTGTGCCGGATTTTGAAGGTCTAGAGGATTTTGGCGGCGATGTTCTCCATGCTGG 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 GAAAGTTGTGCCGGATTTTGAAGGTCTAGAGGATTTTGGCGGCGATGTTCTCCATGCTGG 720
Query 721 TGACTATAAATCTGGTGGAAGGTACGAAGGGAAAAAGGTTTTGGTGGTGGGATGTGGAAA 780
|||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 721 TGACTATAAATCCGGTGGAAGGTACCAAGGGAAAAAGGTTTTGGTGGTGGGATGTGGAAA 780
Query 781 CTCCGGTATGGAAGTCTCTCTCGATCTCTACAATCACGGAGCAAACCCATCAATGGTCGT 840
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 781 CTCCGGTATGGAAGTCTCTCTCGATCTCTACAATCACGGAGCAAACCCATCGATGGTCGT 840
Query 841 TCGTAGCGCTGTGCATGTTTTACCAAGAGAGATTTTTGGGAAATCAACGTTTGAATTAGG 900
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 TCGTAGCGCTGTTCATGTTTTACCAAGAGAGATTTTTGGGAAATCAACGTTTGAATTAGG 900
Query 901 AGTTACGATGATGAAGTATATGCCAGTTTGGCTCGCGGACAAGACCATACTCTTTCTAGC 960
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||
Sbjct 901 AGTTACGATGATGAAGTATATGCCCGTTTGGCTCGCGGACAAGACTATACTCTTTCTGGC 960
Query 961 GAGGATGATTTTAGGGAATACCGATAAATACGGTCTAAAAAGGCCGAAAATTGGACCGTT 1020
|||||| || || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 GAGGATTATCTTGGGGAATACCGATAAATACGGTCTAAAAAGGCCGAAAATTGGACCGTT 1020
Query 1021 AGAGCTAAAGAACAAGGAAGGGAAAACTCCAGTACTTGACATCGGAGCGTTACCCAAAAT 1080
||||||||||||||||||||| |||||||| || ||||||||||||||||||||||||||
Sbjct 1021 AGAGCTAAAGAACAAGGAAGGCAAAACTCCGGTTCTTGACATCGGAGCGTTACCCAAAAT 1080
Query 1081 CAGATCGGGAAAGATCAAAATCGTCCCCGGAATCATAAAGTTCGGTGAAGGAAAAGTTGA 1140
||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct 1081 CAGATCGGGAAAGATCAAAATCGTCCCCGGAATCATAAAGTTCGGCAAAGGCAAAGTTGA 1140
Query 1141 ACTAGTGGATGGCCGTGTTCTTGAGATTGATTCCGTTATTCTAGCTACCGGATACAGAAG 1200
||| | ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1141 GCTAATAGATGGCCGTGTTCTTGAGATTGATTCCGTTATTCTAGCTACTGGATACAGAAG 1200
Query 1201 CAACGTCCCTTCATGGCTTAAGGACAATGACTTCTTCTCCGATGATGGGATACCAAAAAA 1260
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1201 CAACGTCCCTTCATGGCTTAAGGACAACGACTTCTTCTCCGATGATGGGATACCAAAAAA 1260
Query 1261 CCCGTTTCCAAACGGATGGAAAGGAGAGGCGGGATTGTATGCGGTAGGGTTCACGAGAAA 1320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1261 CCCGTTTCCAAACGGATGGAAAGGAGAGGCGGGATTGTATGCGGTAGGGTTCACGAGAAA 1320
Query 1321 AGGATTGTTTGGTGCGTCGCTTGATGCTATGAGTGTGGCTCATGATATTGCTAATAGGTG 1380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1321 AGGATTGTTTGGTGCGTCGCTTGATGCTATGAGTGTGGCTCATGATATTGCTAATAGGTG 1380
Query 1381 GAAAGAAGAGTCTAAGCAACAGAAGAAAACTGCTGCTGCTCGTCATCGTCGATGTATTTC 1440
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1381 GAAAGAAGAGTCTAAGCAACAGAAGAAAACTGCTGCTGCTCGTCATCGTCGTTGTATTTC 1440
Query 1441 ACATTTCTAA-CTATCAAAATCAAATTTAGGGAAGA---TA---A--------------T 1479
|||||||||| | |||| ||||||||||||||| | || | |
Sbjct 1441 ACATTTCTAATC-ATCATTATCAAATTTAGGGAAAAAAATATTCAAAAAAAGAAGAAGAT 1499
Query 1480 --T-AAGCCCTCTCCTCagaagaaaaatacccc-aaaaaataagagaattgtgaaaagaa 1535
| ||||||||||||| |||||||| |||||| |||||| |||||||||||||||||||
Sbjct 1500 AATTAAGCCCTCTCCTCGGAAGAAAA-TACCCCCAAAAAA-AAGAGAATTGTGAAAAGAA 1557
Query 1536 aataa-aatTAGGGGGAtttttctttgtttttt-aggaagatgtggcttttttatgtaat 1593
|| || ||| ||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 1558 AAAAATAAT-AGGGGGATTTTTCTTTGTTTTTTTAGGAAGATGTGGCTTTTTTATGTA-T 1615
Query 1594 ttttattgtaagagtgcttttttttgttcttgtatttttttttctatcttcattttagat 1653
||||||| |||||||||||| ||||||| ||||||||||||| |||||||||||||||
Sbjct 1616 TTTTATTTTAAGAGTGCTTTATTTTGTTGTTGTATTTTTTTTAA-ATCTTCATTTTAGAT 1674
Query 1654 tttGAACTCTTGTAAGAAGTTTTGCTTAATCTAATATGACAAATAT 1699
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1675 TTTGAACTCTTGTAAGAAGTTTTGCTTAATCTAATATGACAAATAT 1720
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83985511785
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5