BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470445
Length=1551
Score E
Sequences producing significant alignments: (Bits) Value
AT1G04620.1 | Symbols: | coenzyme F420 hydrogenase family / de... 2562 0.0
> AT1G04620.1 | Symbols: | coenzyme F420 hydrogenase family /
dehydrogenase, beta subunit family | chr1:1282741-1286584 REVERSE
LENGTH=1609
Length=1609
Score = 2562 bits (1387), Expect = 0.0
Identities = 1503/1558 (96%), Gaps = 12/1558 (1%)
Strand=Plus/Plus
Query 1 tctctctctctcctctcgtc-tctctcGCTGAGCAACCATGATTAC--T-GTCACCTCCA 56
||| ||||| || |||| || ||||| |||| |||||||||||||| | ||||||||||
Sbjct 57 TCT-TCTCT-TCTTCTCTTCTTCTCTGGCTGGGCAACCATGATTACTGTCGTCACCTCCA 114
Query 57 AGCTCTCTCTCCTTCCTCCATG-CTTCTCTGTCGTTAACTCTTCATCTTCGCGTTCCAAA 115
||||||||||||||||||| | |||||| |||||||||||||| |||||||||||||||
Sbjct 115 GGCTCTCTCTCCTTCCTCCA-GTCTTCTCCGTCGTTAACTCTTCTTCTTCGCGTTCCAAA 173
Query 116 GATATGAATAC-AGAGCCAAAAAAGAAAGTTAAACTAAGAGAAGACTGGAGAGAAAAGTC 174
||||||||| | ||||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct 174 GATATGAAT-CTAGAGCCAAAAAAGAAGGTTAAATTAAGAGAAGACTGGAGAGAAAAGTC 232
Query 175 CAAACCTATCCCACCCGGAGGAACCTATCCAGCTAAAGACCATTGCAGTCGA-TGCGGGT 233
|| ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 233 CAGACCTATCCCACCCGGAGGAACCTATCCAGCTAAAGACCATTGCAGTC-AGTGCGGGC 291
Query 234 TATGCGACACCTATTACATCGCCCATGTGAAGGAGGCATGTGCATTTCTTGGAGATGGAA 293
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 292 TATGCGACACCTACTACATTGCCCATGTGAAGGAGGCATGTGCATTTCTTGGAGATGGAA 351
Query 294 TGTCAAGGATTGAGAGCTTGGAGCCTGTTGTGCATGGTCGAGGAAGGAAACCAGATTCCT 353
|||||||||||||||||||||| ||||||||||||||| ||||||||||| |||||||||
Sbjct 352 TGTCAAGGATTGAGAGCTTGGAACCTGTTGTGCATGGTAGAGGAAGGAAAGCAGATTCCT 411
Query 354 TAGAAGATACATATTTTGGGGTGCATCAAGAGCAGCTCTATGCTCGTAAGTTGAAGCCTG 413
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 412 TACAAGATACATATTTTGGGGTGCATCAAGAGCAGCTCTATGCTCGTAAGTTGAAGCCTG 471
Query 414 TTGAAGGAGCTCAGTGGACTGGAATTGTCACAACCATAGCCATTGAGATGCTGAAATCTA 473
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 472 TCGAAGGAGCTCAGTGGACTGGAATTGTCACAACCATAGCCATTGAGATGCTGAAATCTA 531
Query 474 ACATGGTTGAGGCTGTTGTTTGTGTGCAGAGTGATCCTGAAGACAGATTATCTCCAAGAC 533
| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 532 ATATGGTTGAAGCTGTCGTTTGTGTGCAGAGTGATCCTGAAGACAGATTATCTCCAAGAC 591
Query 534 CAGTATTAGCCAGGACACCTGAAGAAGTTTTGGCTGCAAGAGGTGTCAAGCCAACTCTGT 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 592 CAGTATTAGCCAGGACACCTGAAGAAGTTTTGGCTGCAAGAGGTGTCAAGCCAACTCTGT 651
Query 594 CTCCTAATCTGAATACTCTTGAATTAATCGAGGCTTCCGGAGTGAAACGTCTTCTGTTTT 653
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 652 CTCCTAATCTGAATACTCTTGAATTAATCGAGGCTTCCGGAGTGAAGCGTCTTCTGTTTT 711
Query 654 GCGGTGTGGGTTGCCAAGTGCAAGCATTGAGATCAGTGGAGCAGCATCTGAATCTGGAGA 713
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 712 GCGGTGTGGGTTGCCAAGTGCAAGCATTGAGATCAGTGGAGCAGCATCTGAATCTGGAAA 771
Query 714 AGTTGTATGTACTAGGCACCAATTGTGTGGACAATGGAACACGAGATGGACTAGACAAGT 773
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 772 AGTTGTATGTACTAGGCACCAATTGTGTGGACAACGGAACACGAGATGGACTAGACAAGT 831
Query 774 TTCTGAAAGCGGCTAGTAAGGAGCCAGAGACTGTTCTCCATTATGAATTTATGCAAGATT 833
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 832 TTCTGAAAGCAGCTAGTAAAGAGCCAGAGACTGTTCTCCATTATGAATTTATGCAAGATT 891
Query 834 ACAAGGTCCAACTCAAACACTTGGATGGACACATTGAAGAGGTTCCCTATTTCTCTCTAC 893
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 892 ACAAGGTCCAACTCAAACACTTGGATGGACACATTGAAGAGGTTCCCTATTTCTCTCTAC 951
Query 894 CAGCAAACGATTTAGTAGACGTCATAGCTCCATCGTGTTACAGCTGCTTTGATTACACAA 953
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 952 CTGCAAACGATTTAGTAGATGTCATAGCTCCATCGTGTTACAGCTGCTTTGATTACACAA 1011
Query 954 ATGCATTAGCGGATTTGGTTATCGGTTACATGGGTGTTCCGAGGTATTCAGGTCTGAACA 1013
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1012 ATGCATTAGCGGATTTGGTTATCGGTTACATGGGTGTTCCGAAGTATTCAGGTCTGAACA 1071
Query 1014 TGACTGACCATCCACAGTATATTACAGTGAGAAATGAACGCGGGAAAGAAATGCTCAGCT 1073
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1072 TGACTGACCATCCACAGTATATTACAGTGAGAAATGAACGTGGGAAAGAAATGCTCAGCT 1131
Query 1074 TGGTTGAAAACCTTTTGGAGATCACTCCAACAATCAGCAGCGGTGATCGGCGACCTTTTG 1133
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1132 TGGTAGAAAACCTTTTGGAGATCACTCCAACAATCAGCAGCGGTGATCGGCGACCTTTTG 1191
Query 1134 TGACAGAAACTGTTAAGGCAGACGATGATGCTAAGTTTGGTCGAGGTCCTGCTCAGCCAG 1193
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 1192 TGACAGAAACTGTTAAGGCAGACGATGCTGCTAAGTTTGGTCAAGGTCCTGCTCAGCCAG 1251
Query 1194 CGCCAATATTTGTTGGAAACATTATTGCGTTCATCCTAAGTTTGGTTGGTCCTAAGGGTC 1253
||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1252 CGCCACTATTTGTTGGAAACATTATTGCGTTCATCCTAAATTTGGTTGGTCCTAAGGGTC 1311
Query 1254 TAGAATTCGCTCGGTACTCATTGGACTACCATACCATCAGAAACTATTTGCACGTAAACC 1313
||||||| ||||||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct 1312 TAGAATTTGCTCGGTACTCGTTGGACTACCATACCATCAGAAACTATTTGTACGTAAACC 1371
Query 1314 GCAAATGGGGAAAGCAAAGAGCCAACAGCCACATGCCATCATATGCCAAAAAGATAGTGG 1373
|||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct 1372 GCAAATGGGGAAAGCAAAGAGCAAACACCCACATGCCATCATATGCCAAAAAGATAGTGG 1431
Query 1374 AAATGTACAACAAAAACGGCCAAATAGATAAAATGCTCTCCAAGAAATGAACATTTTAGG 1433
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1432 AAATGTACAACAAAAACGGCCAAATAGATAAAATGCTCTCCAAGAAATGAACATTTTAGG 1491
Query 1434 CCTTTCTCATGTAAGTTTGCAAATGTATATTTCATCCTACAAGTGAGTAAATGTACATTG 1493
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1492 CCTTTCTCATGTAAGTTTCCAAATGTATATTTCATCCTACAAGTGAGTAAATGTACATTG 1551
Query 1494 GTCCTACTCTTTCTCAACTTGTAGTATGATAGTAATATCCAAAACTATTTCCCTCGTG 1551
|||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1552 GTCCTACTGTTTCTCAACTTGTAGTATGTTAGTAATATCCAAAACTATTTCCCTCGTG 1609
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76555831125
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5