BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470446
Length=677
Score E
Sequences producing significant alignments: (Bits) Value
AT1G04630.1 | Symbols: MEE4 | GRIM-19 protein | chr1:1289734-12... 1046 0.0
AT2G33220.1 | Symbols: | GRIM-19 protein | chr2:14078851-14080... 547 4e-155
> AT1G04630.1 | Symbols: MEE4 | GRIM-19 protein | chr1:1289734-1291112
REVERSE LENGTH=745
Length=745
Score = 1046 bits (566), Expect = 0.0
Identities = 642/677 (95%), Gaps = 11/677 (2%)
Strand=Plus/Plus
Query 3 GTTGTTCATCGGGATCCCTAGAACACTCGATTTCAGCAAAAATCAAAATCGGATTCAGTG 62
|||||||||||| |||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct 28 GTTGTTCATCGGAATCCCTAGAACACTCGATTTCAGC-AAAATC-AAATCGGATTCAGTG 85
Query 63 ATC-AGAGTAAATTTGGTCGAGAAGAAATTGAGCGTTGAAGATGACGGAGGCGGTGATTA 121
||| | ||| ||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 86 ATCAAAAGTCAATTTGGTCGAGAAGAAATTGAGCGTTGAAGATGACGGAGGCGATGATAA 145
Query 122 GGAATAAGCCAGGAATGGCGAGTGTGAAGGACATGCCGCTGCTTCAGGATGGTCCGCCAC 181
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 146 GAAATAAGCCAGGAATGGCGAGTGTGAAGGATATGCCGCTGCTTCAGGATGGTCCGCCAC 205
Query 182 CGGGTGGGTTCGCACCGGTCCGATATGCTCGCCGGATATCCAACACGGGTCCTAGTGCTA 241
|||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |
Sbjct 206 CGGGTGGGTTCGCACCGGTCCGATATGCCCGCCGGATATCCAATACGGGTCCTAGTGCAA 265
Query 242 TGGCCATTTTCCTAACCGTTTCTGGTGCCTTTGCTTGGGGAATGTACCAGGTCGGCCAGG 301
||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 266 TGGCCATGTTCCTTGCCGTTTCTGGTGCCTTTGCTTGGGGAATGTACCAGGTCGGCCAGG 325
Query 302 GAAACAAAATCCGCAGGGCATTGAAGGAAGAGAAATATGCTGCTCGTAGAGCAATACTTC 361
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 326 GAAACAAAATCCGCAGGGCATTGAAGGAAGAGAAATATGCTGCTCGTAGAACAATACTTC 385
Query 362 CCATTCTTCAAGCAGAAGAAGATGAAAGGTTTGTGTCTGAGTGGAAAAAGTATCTGGAAT 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 386 CCATTCTTCAAGCAGAAGAAGATGAAAGGTTTGTGTCTGAGTGGAAAAAGTATCTGGAAT 445
Query 422 ATGAGGCTGATGTAATGAAGGATGTTCCGGGATGGAAAGTTGGTGAGAATGTGTACAATT 481
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 446 ATGAGGCTGATGTAATGAAAGATGTTCCGGGATGGAAAGTTGGCGAGAATGTGTACAATT 505
Query 482 CTGGTCGCTGGATGCCACCGGCTACTGGGGAACTCCGTCCTGATGTCTGGTGATT-CTGT 540
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||| | |
Sbjct 506 CTGGTCGCTGGATGCCTCCGGCTACTGGGGAACTCCGTCCTGATGTGTGGTGATTTCC-T 564
Query 541 AGTTTCTCTCAGATGCAaatgatgatgatgaatgaatgaatgTTTCGTTGAGGATTGACA 600
||||||||||| ||||| | |||||||||| ||||||| ||||||| |||||||||| |
Sbjct 565 AGTTTCTCTCAAATGCA--T-ATGATGATGA-TGAATGA-TGTTTCGCTGAGGATTGATA 619
Query 601 TGTTCTTGTTATATCttttttttCATCGGGTAATAAGAGAATGATTCAACATACAGTATT 660
|||||||||||||||||||||| | |||||||||||||||||||||||||| ||||||||
Sbjct 620 TGTTCTTGTTATATCTTTTTTT-CTTCGGGTAATAAGAGAATGATTCAACAGACAGTATT 678
Query 661 CTTCTTGTATTGGTTTT 677
|||||||||||||||||
Sbjct 679 CTTCTTGTATTGGTTTT 695
> AT2G33220.1 | Symbols: | GRIM-19 protein | chr2:14078851-14080157
FORWARD LENGTH=783
Length=783
Score = 547 bits (296), Expect = 4e-155
Identities = 388/434 (89%), Gaps = 0/434 (0%)
Strand=Plus/Plus
Query 99 GAAGATGACGGAGGCGGTGATTAGGAATAAGCCAGGAATGGCGAGTGTGAAGGACATGCC 158
|||||||||||||||| |||| ||||| |||||||||||||||||||||||||| |||||
Sbjct 120 GAAGATGACGGAGGCGATGATAAGGAAGAAGCCAGGAATGGCGAGTGTGAAGGATATGCC 179
Query 159 GCTGCTTCAGGATGGTCCGCCACCGGGTGGGTTCGCACCGGTCCGATATGCTCGCCGGAT 218
| |||||||||||||||| ||||| ||||| ||||| |||||||||||||||||||||||
Sbjct 180 GTTGCTTCAGGATGGTCCACCACCTGGTGGATTCGCGCCGGTCCGATATGCTCGCCGGAT 239
Query 219 ATCCAACACGGGTCCTAGTGCTATGGCCATTTTCCTAACCGTTTCTGGTGCCTTTGCTTG 278
||||||||||| ||||| || ||||| |||||||| |||||||| ||||| ||||||||
Sbjct 240 CTCCAACACGGGACCTAGCGCCATGGCTATTTTCCTTACCGTTTCCGGTGCTTTTGCTTG 299
Query 279 GGGAATGTACCAGGTCGGCCAGGGAAACAAAATCCGCAGGGCATTGAAGGAAGAGAAATA 338
||| |||||||| || || ||||| ||||||||||||||||| |||||||||||||| ||
Sbjct 300 GGGCATGTACCAAGTTGGTCAGGGCAACAAAATCCGCAGGGCGTTGAAGGAAGAGAAGTA 359
Query 339 TGCTGCTCGTAGAGCAATACTTCCCATTCTTCAAGCAGAAGAAGATGAAAGGTTTGTGTC 398
||||| ||||||||||| || || ||||||||||| |||||||||||||||||||||||
Sbjct 360 CGCTGCACGTAGAGCAATTCTACCGATTCTTCAAGCTGAAGAAGATGAAAGGTTTGTGTC 419
Query 399 TGAGTGGAAAAAGTATCTGGAATATGAGGCTGATGTAATGAAGGATGTTCCGGGATGGAA 458
||||||||| |||||||| ||||| ||||| ||||| |||||||||||||| ||||||||
Sbjct 420 TGAGTGGAAGAAGTATCTAGAATACGAGGCGGATGTGATGAAGGATGTTCCTGGATGGAA 479
Query 459 AGTTGGTGAGAATGTGTACAATTCTGGTCGCTGGATGCCACCGGCTACTGGGGAACTCCG 518
||| ||||| || ||||||||||||||||| |||||||| || ||||| || || || ||
Sbjct 480 AGTCGGTGAAAACGTGTACAATTCTGGTCGTTGGATGCCTCCAGCTACCGGAGAGCTTCG 539
Query 519 TCCTGATGTCTGGT 532
||||||||||||||
Sbjct 540 TCCTGATGTCTGGT 553
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32752663844
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5