BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg470450

Length=407
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G04645.1 | Symbols:  | Plant self-incompatibility protein S1...   569    5e-162


> AT1G04645.1 | Symbols:  | Plant self-incompatibility protein 
S1 family | chr1:1293770-1294263 REVERSE LENGTH=494
Length=494

 Score =  569 bits (308),  Expect = 5e-162
 Identities = 370/400 (93%), Gaps = 4/400 (1%)
 Strand=Plus/Plus

Query  1    AAATGGaaaaaaaTTATATAGTTTGTTTGTTCTTCTTTCTTTTATTTGGTTC-AGTTCAT  59
            |||||||||||  || ||| ||||| || |||||||||||||||||||||||  ||| ||
Sbjct  23   AAATGGAAAAAGTTTCTATTGTTTGCTTCTTCTTCTTTCTTTTATTTGGTTCGGGTT-AT  81

Query  60   GGGGGAGTCCCACCGTTCTGGCGCGATACGGTCGTCACGATGACAAACTTGATTGGCGGT  119
            |||||  |||||||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct  82   GGGGGCCTCCCACCGTTCTGGCGCGCTACGGTTGTCACGATGACAAACTTGATTGGCGGT  141

Query  120  CCACCTCTTACTATACATTGCAAATCCAAGCAAGACGATCTAGGACCTCACGTGGTGCCT  179
            ||||||||||| |||||||||||||||||||||||||||||||||  |||||||||||||
Sbjct  142  CCACCTCTTACCATACATTGCAAATCCAAGCAAGACGATCTAGGAATTCACGTGGTGCCT  201

Query  180  TTCAGGCAAGAGTACCACTTCAAGTTTCAACCAAATCTTTGGAAATCAACATTGTTCTTT  239
            |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  202  TTCAAGCAAGAGTACCACTTCAAGTTTCAACCAAATCTTTGGAAATCAACATTGTTCTTT  261

Query  240  TGCAGTTTTCAATGGGCCAATCAATTCAAG-CGGTTTGATATATTTGATGCTCAGAGAGA  298
            |||||||| ||||||| || |||||||||| | ||||||||||| |||||||||||||||
Sbjct  262  TGCAGTTTCCAATGGGACAGTCAATTCAAGTC-GTTTGATATATATGATGCTCAGAGAGA  320

Query  299  TCAAGATGTATGTGATCAGTGTCACTGGGAAATAAAACCTGATGGTCCATGCAGGCTCGG  358
            ||||| | |||||||| | ||||| |||||||||||||||||||||||||||||||||||
Sbjct  321  TCAAGGTATATGTGATGACTGTCAGTGGGAAATAAAACCTGATGGTCCATGCAGGCTCGG  380

Query  359  TAAAAAGGCGAAATGTTTTCCTTGGAATTAATTTTGTACT  398
            ||||||||||||||||||||||||||| ||| ||||||||
Sbjct  381  TAAAAAGGCGAAATGTTTTCCTTGGAAGTAAGTTTGTACT  420



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19252547867


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5