BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470452
Length=1187
Score E
Sequences producing significant alignments: (Bits) Value
AT1G04660.1 | Symbols: | glycine-rich protein | chr1:1300486-1... 1567 0.0
> AT1G04660.1 | Symbols: | glycine-rich protein | chr1:1300486-1301773
REVERSE LENGTH=1288
Length=1288
Score = 1567 bits (848), Expect = 0.0
Identities = 1056/1147 (92%), Gaps = 51/1147 (4%)
Strand=Plus/Plus
Query 78 AATAATAGAATTCAAATGCTTTCGCTTGCTGACTGTAG-AGCCTGATGTCACTAGCCAAT 136
||||||||||||||||||| ||||| ||||||||||| | |||||| |||||||||||
Sbjct 155 AATAATAGAATTCAAATGC--TCGCTCGCTGACTGTAGTACCCTGATATCACTAGCCAA- 211
Query 137 TCCAATTTACG----aa--aaaaa-gaaaaaaa---aaaaCTCGACCAATCAATTGTCCA 186
| ||| ||||| || ||||| |||||||| ||||||||||||||||| |||||
Sbjct 212 TACAACTTACGAAAAAATGAAAAATGAAAAAAATTTTAAACTCGACCAATCAATCGTCCA 271
Query 187 TGGTATAGTTGTATCATCAGACAGCCTTTAATTACCAAGTAAAAAATGTTATAAATTGGG 246
|||||||||||||||||||||||||| | |||| ||| |||||||||||||||||||
Sbjct 272 TGGTATAGTTGTATCATCAGACAGCC--T--TTACTAAG-GAAAAATGTTATAAATTGGG 326
Query 247 TTCACAGCCAAATTTATGACTTTCAACTGTCACCAACCTTACATTTTGCTATAAAAACCC 306
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 327 TTCGTGGCCAAATTTATGACTTTCAACTGTCACCAACCTTACATTTTGCTATATAAACCC 386
Query 307 CAAGAAACTGATCATTACAAA---CATCAACATAAAAGACGATCAATATAATCTAG--aa 361
||||||| |||||| ||| || ||||||||||||||||||||||||||||| ||
Sbjct 387 TAAGAAAC---TCATTATAAACTTCAACAACATAAAAGACGATCAATATAATCTAGAAAA 443
Query 362 aaaaagag-aga-ag-agagagagaTGTCGAGAGCTTTGTCAGTCGTTTGTGTCTTGCTC 418
||||| || ||| || ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 444 AAAAAAAGAAGAGAGAAGAGAGAAATGTCGAGAGCTTTGTCAGTCGTTTGTGTCTTGCTC 503
Query 419 GCTATATCCTTCGTCTACGCACGTGCTCGTCAGGTGCCGGGAGAGTCTGATGAGGGAAAG 478
|| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 504 GCCATATCCTTCGTCTGTGCACGTGCTCGTCAGGTGCCGGGAGAGTCTGATGAGGGAAAG 563
Query 479 ACGACGGGACATGACGATACAACAACAATGCCCATGCATGCAAAAGCAGCTGATCAGTTA 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 564 ACGACGGGACATGACGATACAACAACAATGCCCATGCATGCAAAAGCAGCTGATCAGTTA 623
Query 539 CCACCAAAGAGCGTCGGCGACAAAAAATGCATCGGAGGAGTTGCTGGAGTAGGTGGATTC 598
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 624 CCACCAAAGAGCGTCGGCGACAAAAAATGCATCGGAGGAGTTGCTGGAGTCGGTGGATTC 683
Query 599 GCCGGAGTTGGTGGTGTTGCCGGCGTGGGAGGTCTAGGCATGCCACTCATCGGTGGTCTT 658
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 684 GCCGGAGTTGGTGGTGTTGCCGGCGTGGGAGGTCTAGGGATGCCACTCATCGGTGGTCTT 743
Query 659 GGCGGGATCGGTAAGTATGGTGGCATAGGCGGTGCAGCTGGAATCGGTGGATTTCATAGT 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 744 GGCGGGATCGGTAAGTATGGTGGCATAGGCGGTGCAGCTGGAATCGGTGGATTTCATAGT 803
Query 719 ATAGGCGGTGTTGGCGGTGTAGGAGG-G--GG------TGTTGGAGGTCTAGGCGGTGTA 769
|||||||||||||||||| |||| || | || |||||| ||||||||||||||
Sbjct 804 ATAGGCGGTGTTGGCGGTCTAGGCGGTGTCGGAGGAGGTGTTGGCGGTCTAGGCGGTGTT 863
Query 770 GGAGGGGGTGTTGGCGGTCTAGGCGGTGTTGGCGGTCTAGGTGGAGCTGGTTTAGGCGGT 829
|||||||||||||| |||||||| || |||||||||||||||||||||||||||||||||
Sbjct 864 GGAGGGGGTGTTGGTGGTCTAGGTGGCGTTGGCGGTCTAGGTGGAGCTGGTTTAGGCGGT 923
Query 830 GTAGGTGGTGTTGGCGGTGGTATTGGTAAAGCTGGTGGTATTGGCGGTTTAGG----C-- 883
|||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 924 GTAGGTGGTGTTGGCGGTGGTATTGGTAAAGCCGGTGGTATTGGCGGTTTAGGTGGTCTA 983
Query 884 GG---AGCCGGaggtggtttgggtggtctaggtggaggtctcggtaaggctggtggtatt 940
|| ||||||||||||||| ||||| || ||| ||||||||||||||||||||||||
Sbjct 984 GGCGGAGCCGGAGGTGGTTTAGGTGG---AGTTGGTGGTCTCGGTAAGGCTGGTGGTATT 1040
Query 941 ggtgttggtggtggtatcggcggtggacacggcgtggtcggtggtgtgATCGATCCACAT 1000
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1041 GGTGTTGGTGGTGGTATCGGTGGTGGACACGGCGTGGTCGGTGGTGTGATCGATCCACAT 1100
Query 1001 CCTTAATAGAGAGTATTTGTTGGTTAGGGTTTTCATTAAGAAATAATTAATTAGTTTCGA 1060
||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct 1101 CCTTAATAGAGAGTATTTGTTGGTTAGGGTTTTAATTAAGGAATAATTAATTAGTTTCGA 1160
Query 1061 TGTTATTGTTGGTCTTTTAATTCGGTGATCATTAGGGTGACTTTTGATCTATTTTCTAGT 1120
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1161 TGTTATTGTTGGTCTTTTAATTCTGTGATCATTAGGGTGACTTTTGATCTATTTTCTAGT 1220
Query 1121 TTGGGCTTTTGTAACGTTTGCTTTGATTTCGGCCGTGGTGTTATGAAATGTGTGACCCTC 1180
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 1221 TTGGGCTTTTGTAACGTTTGCTTTGATTTCGGCCGTGGTGTTATGAAATGTGCGACTCTC 1280
Query 1181 TATGTTT 1187
|||||||
Sbjct 1281 TATGTTT 1287
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58282832745
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5