BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg470453

Length=595
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G04670.1 | Symbols:  | unknown protein; Has 40 Blast hits to...   804    0.0  


> AT1G04670.1 | Symbols:  | unknown protein; Has 40 Blast hits 
to 40 proteins in 14 species: Archae - 2; Bacteria - 5; Metazoa 
- 1; Fungi - 2; Plants - 30; Viruses - 0; Other Eukaryotes 
- 0 (source: NCBI BLink). | chr1:1301861-1302724 FORWARD 
LENGTH=697
Length=697

 Score =  804 bits (435),  Expect = 0.0
 Identities = 523/562 (93%), Gaps = 19/562 (3%)
 Strand=Plus/Plus

Query  1    TTGTCTTCTACGCTTTGATTCTACAATAGTTAA-TTAAGATGCATGCATCAAAACTGGGT  59
            |||||||| || ||||||||||   ||||  || |||||||| |||||||||||||||||
Sbjct  91   TTGTCTTCAACACTTTGATTCT---ATAG--AAGTTAAGATGTATGCATCAAAACTGGGT  145

Query  60   AAAGTTCTGATTTCTAATGGTAAAACGGCAAGGAGTGTTCCACTATGTAGGACATTCGTT  119
            ||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct  146  AAAGTTCTGATCTCTAATGGTAAAACGGCAAGGAGTGTTCCACTATATAGGACATTCGTT  205

Query  120  TCAGCGTCACCGAGGCCCTTACAGGGAAAAGAAGAGGCAGAGCAATGCCAAAAGGTGAAA  179
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  206  TCAGCGTCACCGAGGCCCTTACAGGGAAAAGAAGAGGCAGAGCAATGCCAAAAGGTGAAA  265

Query  180  GAAGCAGCAGAGGCAGTGAAAGAAGGAGCCAAGCAAGTGAAGGAAACCACTGAGTACATC  239
            ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct  266  GAAGCAGCAGAGGCAGTGAAAGAAGGAGCGAAGCAAGTGAAGGAAACTACTGAGTACATC  325

Query  240  CAAGATGTCGCTTCCACTACTGCTGGCCGTGTGACTAAGATGACAAAAGATGTAACTGAA  299
            ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || 
Sbjct  326  CAAGATGTCGCTTCCACTACTGCTGGCCGAGTGACTAAGATGACAAAAGATGTAACGGAG  385

Query  300  AAAGTCACTGAGACAACGGATTCCATCACTGAAAAAGCTAAAGGTTCTGTCTCTGGTGTT  359
            ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct  386  AAAGTCACTGAGACAACGGATACCATCACTGAAAAAGCTAAAGGTTCTGTCTCTGGTGTT  445

Query  360  TTAGGCACCGCTAAAAACGCTACCGATATCATCAAGAACAAGATCCTTGGTGGTGATTAG  419
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  446  TTAGGCACCGCTAAAAACGCTACCGATATCATCAAGAACAAGATCCTTGGTGGTGATTAG  505

Query  420  TTACAATCTACCC-TTATATATTTGATATTATTTATGTACGTCTCAATAAAGTAATATAT  478
            ||| ||||||||| || ||||| | |||||||||||||| ||||||||||||||||||||
Sbjct  506  TTAAAATCTACCCATT-TATATATCATATTATTTATGTATGTCTCAATAAAGTAATATAT  564

Query  479  TCAGAAAATTTTAAGTTTTGATTTGGTAATTATATGAATTCATGATATATCAGATTAAAT  538
            |  |||||||| ||||||||||||||||||||| | | |    |||||||| |||||  |
Sbjct  565  T--GAAAATTTAAAGTTTTGATTTGGTAATTAT-T-A-T----GATATATCTGATTACGT  615

Query  539  TATAAATCTACA-TGAAAATTG  559
            |||||||||| | |||| ||||
Sbjct  616  TATAAATCTA-AGTGAAGATTG  636



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 28633463790


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5