BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470455
Length=1411
Score E
Sequences producing significant alignments: (Bits) Value
AT1G04690.1 | Symbols: KAB1, KV-BETA1 | potassium channel beta ... 2194 0.0
> AT1G04690.1 | Symbols: KAB1, KV-BETA1 | potassium channel beta
subunit 1 | chr1:1313564-1315750 FORWARD LENGTH=1415
Length=1415
Score = 2194 bits (1188), Expect = 0.0
Identities = 1346/1418 (95%), Gaps = 27/1418 (2%)
Strand=Plus/Plus
Query 2 TTCTTCATTCATTACAACAAACTCCTCTTGAGACCTagagagagagagagagaTAGTGAG 61
||||||||||||||||||||||| || |||||||||| |||||||||||| |||||| |
Sbjct 5 TTCTTCATTCATTACAACAAACT-CT-TTGAGACCTAAAGAGAGAGAGAGCGATAGT--G 60
Query 62 AGATTTAGATCAACAGATTTGAATCGATTTCTGCAAAA-ATGCAGTACAAGAATCTGGGG 120
||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct 61 AGATTTAGATCAACAGATTTGAATCGATTTCTG-AAAACATGCAGTACAAGAATCTGGGG 119
Query 121 AAATCGGGTTTGAAGGTGAGCACGCTCTCATTCGGAGCATGGGTTACGTTTGGGAACCAG 180
||||||||||| || |||||||||||||| |||||||| ||||||||||| |||||||||
Sbjct 120 AAATCGGGTTTAAAAGTGAGCACGCTCTCGTTCGGAGCGTGGGTTACGTTCGGGAACCAG 179
Query 181 CTCGATGTGAAAGAAGCGAAATCGATTCTTCAGTGTTGTCGTGATCATGGAGTCAATTTC 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 CTCGATGTGAAAGAAGCGAAATCGATTCTTCAGTGTTGTCGTGATCATGGAGTCAATTTC 239
Query 241 TTCGACAACGCGGAGGTTTACGCTAATGGTCGCGCTGAGGAGATTATGGGTCAAGCGATT 300
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 TTCGATAACGCTGAGGTTTACGCTAATGGTCGCGCTGAGGAGATTATGGGTCAAGCGATT 299
Query 301 CGTGAGCTGGGTTGGCGTCGATCTGATATCGTCATCTCTACCAAGATCTTCTGGGGTGGT 360
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 300 CGTGAACTGGGTTGGCGTCGATCCGATATCGTCATCTCTACCAAGATCTTCTGGGGTGGT 359
Query 361 CCTGGTCCTAACGATAAGGGTTTATCGAGGAAACATATCGTCGAAGGCACTAAAGCTTCT 420
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 360 CCTGGTCCTAACGATAAGGGTTTATCTAGGAAACATATCGTTGAAGGCACTAAAGCTTCT 419
Query 421 CTCAAACGACTTGATATGGATTACGTTGATGTGCTCTATTGCCACAGGCCGGATGCTTCA 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 CTCAAACGACTTGATATGGATTACGTTGATGTGCTCTATTGCCACAGGCCGGATGCTTCA 479
Query 481 ACTCCTATTGAAGAGACGGTTAGGGCGATGAACTACGTGATTGATAAGGGTTGGGCATTT 540
|||||||| |||||||| || ||||||||||||||||||||||||||||||||||| ||
Sbjct 480 ACTCCTATCGAAGAGACTGTGAGGGCGATGAACTACGTGATTGATAAGGGTTGGGCCTTC 539
Query 541 TATTGGGGTACCAGTGAATGGTCAGCTCAACAAATTACCGAGGCATGGGGAGCTGCTGAC 600
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 540 TATTGGGGAACCAGTGAATGGTCAGCTCAACAAATTACGGAGGCATGGGGAGCTGCTGAC 599
Query 601 CGGTTGGATTTGGTTGGTCCAATCGTCGAACAGCCAGAATACAACATGTTTGCTAGGCAC 660
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 600 CGGTTGGATTTGGTTGGTCCAATTGTCGAACAGCCAGAATACAACATGTTCGCTAGGCAC 659
Query 661 AAAGTTGAGACAGAGTTTCTTCCTCTGTACACCAACCATGGTATAGGTCTCACTACTTGG 720
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 660 AAAGTTGAGACAGAGTTTCTTCCTCTGTACACCAACCATGGTATAGGTCTCACTACCTGG 719
Query 721 AGCCCACTTGCATCGGGTGTGCTCACTGGTAAATACAACAAGGGAGCTATTCCCTCAGAC 780
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 AGCCCACTTGCATCTGGTGTGCTCACTGGTAAATACAACAAGGGAGCTATTCCCTCAGAC 779
Query 781 AGCCGATTTGCATTGGAGAACTACAAAAACCTTGCCAATAGATCACTTGTGGATGACGTG 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 AGCCGATTTGCATTGGAGAACTACAAAAACCTTGCCAATAGATCACTTGTGGATGACGTG 839
Query 841 CTGAGGAAAGTTAGCGGTCTCAAACCCATTGCAGATGAGCTAGGTGTAACCTTGGCTCAG 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 CTGAGGAAAGTTAGCGGTCTCAAACCCATTGCAGATGAGCTAGGTGTAACCTTGGCTCAG 899
Query 901 CTTGCCATCGCATGGTGTGCTTCAAATCCTAATGTGTCATCCGTTATCACTGGTGCCACA 960
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 900 CTTGCAATCGCATGGTGTGCTTCAAATCCTAATGTGTCATCTGTTATCACTGGTGCCACA 959
Query 961 AGGGAGTCACAGATTCAAGAAAATATGAAAGCTGTTGATGTGATCCCATTGTTGACACCT 1020
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 960 AGGGAGTCACAGATTCAAGAAAATATGAAAGCTGTTGATGTGATCCCATTGTTGACCCCT 1019
Query 1021 ATTGTTCTGGACAAGATTGAGCAAGTGATACAGAGCAAACCAAAACGTCCTGAATCGTAT 1080
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1020 ATTGTTCTGGACAAGATTGAGCAAGTGATACAGAGCAAACCAAAACGTCCTGAATCATAT 1079
Query 1081 CGGTAAAACCAAAATTCAAGATCTTTCTTTCCTATTCAATCGCTTT-CAAAAGAGTGTTG 1139
||||||||||| || |||||||| |||| |||||||||||| ||| |||||||||||||
Sbjct 1080 AGGTAAAACCAACATCCAAGATCTCTCTTCCCTATTCAATCG-TTTACAAAAGAGTGTTG 1138
Query 1140 CAGGAAAAAGATAAAGAAAACATTAGAAGAAGAtgtgtgatgtttgttgttggatgtttt 1199
||||||||||| ||| |||||||||||| | |||||||| ||||||||||||||
Sbjct 1139 CAGGAAAAAGA-AAA-----CATTAGAAGAAGCTCTGTGATGTATGTTGTTGGATGTT-- 1190
Query 1200 gtctcgtgttggctttgtttgttctctttgGCAGCTTATGCATTTTTAAGACTCAGACAG 1259
||||||| || |||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1191 GTCTCGTTTTCGCTTTGTTTGTTCTCTTTAGCAGCTTATGCATTTTTAAGACTCAGACAG 1250
Query 1260 AGA-AAGAGAGAGAGTAATGTGtttttttAGTTGTT---GTTTCATCATTTAAAAA-CGG 1314
||| || ||||||| |||||| ||||||||||| || ||||||||||||||||| |||
Sbjct 1251 AGAGAA-AGAGAGACTAATGTTTTTTTTTAGTTTTTCTTGTTTCATCATTTAAAAAACGG 1309
Query 1315 TCTTATT-GTTACTTGTTAGTAGTGAAACTTAAAGTTTGGTTCTTGTAGTT-GCGATATC 1372
||||||| ||||||||||||| | || ||||||||||||||||||||||| || || ||
Sbjct 1310 TCTTATTTGTTACTTGTTAGT-GC-AA-CTTAAAGTTTGGTTCTTGTAGTTTGCCATGTC 1366
Query 1373 ATGACGTCAATATATTGAATAGCTCATCAAACAATTCT 1410
||||||||||||||||||||||||||||||||||||||
Sbjct 1367 ATGACGTCAATATATTGAATAGCTCATCAAACAATTCT 1404
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69527754825
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5