BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470458
Length=1394
Score E
Sequences producing significant alignments: (Bits) Value
AT1G04710.1 | Symbols: KAT1, PKT4 | peroxisomal 3-ketoacyl-CoA ... 2056 0.0
AT2G33150.1 | Symbols: PKT3, PED1, KAT2 | peroxisomal 3-ketoacy... 1245 0.0
> AT1G04710.1 | Symbols: KAT1, PKT4 | peroxisomal 3-ketoacyl-CoA
thiolase 4 | chr1:1321904-1324782 FORWARD LENGTH=1595
Length=1595
Score = 2056 bits (1113), Expect = 0.0
Identities = 1283/1364 (94%), Gaps = 15/1364 (1%)
Strand=Plus/Plus
Query 1 GCCTCACCTTGCTTGGCCAAAGAAAGTGCTGCATATCAATATGGAGATGATGTTGTCATT 60
|||||| |||||||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 116 GCCTCAGCTTGCTTGTCCAAAGACAGTGCTGCATATCAATATGGAGATGATGTTGTCATT 175
Query 61 GTCGCGGCACAAAGGACTGCACTTTGCAAGGCAAAACGTGGCAGCTTCAAGGATAC-TTA 119
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 176 GTCGCGGCACAAAGGACTGCACTTTGCAAGGCAAAACGTGGCAGCTTCAAGGATACATT- 234
Query 120 CCCAGATGAGTTGCTTGCATCTGTATTGAGAGGATTGATAGAGAAAACAAATGTTAACCC 179
||||| ||||||||||| ||||||||||||| ||||||||||||||| ||||| |||||
Sbjct 235 TCCAGACGAGTTGCTTGCCTCTGTATTGAGAGCATTGATAGAGAAAACTAATGTAAACCC 294
Query 180 AAGTGAAGTTGGTGACATTGTAGTGGGTACTGTTTTGGGACCAGGATCTCAGAGAGCCAC 239
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 295 AAGTGAAGTTGGTGACATTGTAGTGGGTACTGTTTTGGGACCAGGATCTCAGAGAGCCAG 354
Query 240 TGAATGCAGGATGGCTGCGTTCTATGCTGGTTTCCCTGAAACTGTTCCAATCAGAATCGT 299
|||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |||
Sbjct 355 TGAATGCAGGATGGCTGCGTTCTATGCTGGTTTCCCCGAAACTGTTCCCATCAGAACCGT 414
Query 300 GAACAGACAGTGTTCATCTGGGCTTCAAGCTGTTGCTGACGTCGCCGCTGCCATAAGAGC 359
||||||||||||||||||||||||||| ||||||||||| || ||||||||||||| |||
Sbjct 415 GAACAGACAGTGTTCATCTGGGCTTCAGGCTGTTGCTGATGTTGCCGCTGCCATAAAAGC 474
Query 360 AGGTTTTTATGACATTGGTATTGGAGCTGGGCTGGAGTCCATGACAACTAATCCAAGGGG 419
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 475 TGGTTTTTATGACATTGGTATTGGAGCTGGGCTGGAGTCCATGACAACTAATCCAAGGGG 534
Query 420 ATGGAAAGGATCAGTCAACCCAAATGTGAAGAAGTTTGAACAAGCACATAGTTGCCTTCT 479
||||||||||||||||||||||||||||||||||||||||||||| || | |||||||||
Sbjct 535 ATGGAAAGGATCAGTCAACCCAAATGTGAAGAAGTTTGAACAAGCTCACAATTGCCTTCT 594
Query 480 TCCAATGGGTATTACTTCAGAGAATGTAGCACACCGGTTTAATGTTTCAAGGGAGGAGCA 539
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 595 TCCAATGGGTATTACTTCAGAAAATGTAGCACACCGGTTTAATGTTTCAAGGGAGGAGCA 654
Query 540 GGATCAAGCTGCTGTTGATTCTCACAGAAAGGCTGCTTCTGCTACTGCTTCCGGTAAA-T 598
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 655 GGATCAAGCTGCTGTTGATTCTCACAGAAAGGCTGCTTCTGCTACTGCTTCCGG-AAAGT 713
Query 599 TTAAGGATGAAATAATCCCAGTAAAAACCAAGATTGTTGACCCAAAAACAGGTGATGAGA 658
|||||||||| |||| ||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 714 TTAAGGATGAGATAACCCCTGTAAAAACCAAGATTGTTGACCCAAAGACAGGTGATGAGA 773
Query 659 AATCCATAACCGTTTCTGTGGATGATGGGATACGACCTAACACAACCCTTTCCGGACTTG 718
|| ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 774 AACCCATAACAGTTTCTGTGGATGATGGGATTCGACCTAACACAACCCTTTCCGGACTTG 833
Query 719 CAAAGCT-AAGACCAGTGTTTAAGGAAGACGGTACCACAACTGCTGGAAATTCTAGCCAA 777
||||||| ||| |||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 834 CAAAGCTGAAG-CCAGTGTTTAAGGAAGACGGAACCACAACTGCTGGGAATTCTAGCCAA 892
Query 778 TTAAGTGATGGTGCAGGAGCTGTTCTCCTCATGAGGAGAAATGTCGCAATGCAGAAAGGC 837
|||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 893 TTAAGTGACGGTGCTGGAGCTGTTCTCCTTATGAGGAGAAATGTCGCAATGCAGAAAGGC 952
Query 838 CTTCCCATTCTTGGTGTATTCAGGACATTTGCTGCAGTTGGTGTGGACCCAGCCATCATG 897
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 953 CTTCCCATTCTTGGTGTATTCAGGACATTTTCTGCAGTTGGTGTGGACCCAGCCATCATG 1012
Query 898 GGGGTTGGACCAGCTGTTGCCATTCCTGCTGCAGTCAAGGCGGCTGGTTTAGAACTCAAT 957
|||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1013 GGGGTTGGGCCAGCCGTTGCCATTCCTGCTGCAGTCAAGGCAGCTGGTTTAGAACTCAAT 1072
Query 958 GACATCGACTTGTTTGAGATCAACGAGGCGTTTGCATCTCAGTTTGTTTATTGTCGGAAC 1017
||| |||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 1073 GACGTCGACTTGTTTGAGATTAACGAGGCATTTGCATCTCAGTTTGTTTATTGTCGGAAC 1132
Query 1018 AAGTTGGGGATTGACCCGGAAAAGGTCAATGTCAATGGAGGGGCCATAGCCATCGGACAT 1077
||| | ||| | ||| |||||||| |||||||||||||||| ||||||||||| ||||||
Sbjct 1133 AAGCTCGGGCTAGACGCGGAAAAGATCAATGTCAATGGAGGAGCCATAGCCATTGGACAT 1192
Query 1078 CCCTTGGGTGCTACAGGCGCCAGATGCGTTGCGACGCTGCTGCATGAGATGAAACGCCTT 1137
|||||||| |||||||| |||||||||||||||||||||||||||||||||||||| | |
Sbjct 1193 CCCTTGGGCGCTACAGGAGCCAGATGCGTTGCGACGCTGCTGCATGAGATGAAACGACGT 1252
Query 1138 GGTAAAGACTGTCGTTTTGGCGTAGTGTCAATGTGCATAGGTTCGGGAATGGGAGCAGCC 1197
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1253 GGTAAAGACTGTCGTTTTGGCGTAGTGTCAATGTGTATAGGTTCGGGAATGGGAGCAGCC 1312
Query 1198 GCTGTGTTTGAGAGAGGAGGCGGTGTGGATGAGCTCTGCGATGTCCGGAAAGT--AG-GA 1254
|||||||||||||||||||||||||||||||||||||| |||||||||||||| | ||
Sbjct 1313 GCTGTGTTTGAGAGAGGAGGCGGTGTGGATGAGCTCTGTGATGTCCGGAAAGTCTAATGA 1372
Query 1255 CTATAAGGCCTTTTGACCAAGGAACCTAGCTTAGGGGCTTTTACAAATTAGAACACACTA 1314
| ||||||||||||||||||||| ||||||| ||| | |||||||||||||| ||
Sbjct 1373 CAATAAGGCCTTTTGACCAAGGACCCTAGCTAAGGA-C-----CAAATTAGAACACAGTA 1426
Query 1315 CTACAAATAAACATCATTACAAATAAGTGCTTTATAGATGAATA 1358
|||||||||||||| || |||||||| ||| || ||||||||||
Sbjct 1427 CTACAAATAAACATTATCACAAATAAATGCGTTCTAGATGAATA 1470
> AT2G33150.1 | Symbols: PKT3, PED1, KAT2 | peroxisomal 3-ketoacyl-CoA
thiolase 3 | chr2:14047478-14051140 REVERSE LENGTH=1882
Length=1882
Score = 1245 bits (674), Expect = 0.0
Identities = 1031/1204 (86%), Gaps = 22/1204 (2%)
Strand=Plus/Plus
Query 40 TATGGAGATGATGTTGTCATTGTCGCGGCACAAAGGACTGCACTTTGCAAGGCAAAACGT 99
|||||||||||||||||||||||||||||||| |||||| |||| |||||| | ||||||
Sbjct 299 TATGGAGATGATGTTGTCATTGTCGCGGCACATAGGACTCCACTATGCAAGTCCAAACGT 358
Query 100 GGCAGCTTCAAGGATACTTA-CCCAGATGAGTTGCTTGCATCTGTATTGAGAGG-ATTGA 157
|||| ||||||||||| || ||| ||||| ||||| ||| |||| ||||| || |||||
Sbjct 359 GGCAATTTCAAGGATACATATCCC-GATGATTTGCTCGCACCTGTTTTGAG-GGCATTGA 416
Query 158 TAGAGAAAACAAATGTTAACCCAAGTGAAGTTGGTGACATTGTAGTGGGTACTGTTTTGG 217
||||||| || ||| | |||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 417 TAGAGAAGACGAATCTAAACCCAAGTGAAGTAGGTGACATTGTTGTGGGTACTGTTTTGG 476
Query 218 GACCAGGATCTCAGAGAGCCACTGAATGCAGGATGGCTGCGTTCTATGCTGGTTTCCCTG 277
||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 477 CACCTGGATCTCAGAGAGCCAGTGAATGCAGGATGGCTGCGTTCTATGCTGGTTTCCCTG 536
Query 278 AAACTGTTCCAATCAGAA-TCGTGAACAGACAGTGTTCATCTGGGCTTCAAGCTGTTGCT 336
|||| || | |||||| | ||||| |||||||| |||||||||||||| |||||||||
Sbjct 537 AAACCGTGGCTGTCAGAACT-GTGAATAGACAGTGCTCATCTGGGCTTCAGGCTGTTGCT 595
Query 337 GACGTCGCCGCTGCCAT-AAGAGCAGGTTTTTATGACATTGGTATTGGAGCTGGGCTGGA 395
|| || ||||||||||| || ||| || ||||||||||||||||| || ||||| ||||
Sbjct 596 GATGTAGCCGCTGCCATTAA-AGCGGGATTTTATGACATTGGTATCGGGGCTGGTTTGGA 654
Query 396 GTCCATGACAACTAATCCAAGGGGATGGAAAGGATCAGTCAACCCAAATGTGAAGAAGTT 455
||||||||| || ||||||| || |||| |||| |||||||||||| |||||||||||
Sbjct 655 GTCCATGACTACCAATCCAATGGCATGGGAAGGGTCAGTCAACCCAGCGGTGAAGAAGTT 714
Query 456 TGAACAAGCACATAGTTGCCTTCTTCCAATGGGTATTACTTCAGAGAATGTAGCACACCG 515
|| |||||| || | ||| |||||||| |||||| |||| ||||| ||||||||||| ||
Sbjct 715 TGCACAAGCGCAGAATTGTCTTCTTCCTATGGGTGTTACGTCAGAAAATGTAGCACAACG 774
Query 516 GTTTAATGTTTCAAGGGAGGAGCAGGATCAAGCTGCTGTTGATTCTCACAGAAAGGCTGC 575
||| ||| |||||| ||||||| ||||||||||||||||| || ||||||||||| ||
Sbjct 775 CTTTGGTGTCTCAAGGCAGGAGCAAGATCAAGCTGCTGTTGACTCGCACAGAAAGGCAGC 834
Query 576 TTCTGCTACTGCTTCCGGTAAATTTAAGGATGAAATAATCCCAGTAAAAACCAAGATTGT 635
| ||||||||||| | |||||||| |||||||| || || || || || |||||| ||||
Sbjct 835 TGCTGCTACTGCTGCTGGTAAATTCAAGGATGAGATCATTCCTGTTAAGACCAAGCTTGT 894
Query 636 TGACCCAAAAACAGGTGATGAGAAATCCATAACCGTTTCTGTGGATGATGGGATACGACC 695
|||||| || || |||||||||||| |||| || |||||||| |||||||| || |||||
Sbjct 895 TGACCCGAAGACTGGTGATGAGAAACCCATTACAGTTTCTGTTGATGATGGTATCCGACC 954
Query 696 TAAC-ACAACCCTTTCCGGACTTGCAAAGCT-AAGACCAGTGTTTAAGGAAG-ACGGTAC 752
||| ||||| ||| | |||| ||||| ||| |||||||||||| ||| | || ||
Sbjct 955 -AACCACAACTCTTGCTTCTCTTGGGAAGCTGAAG-CCAGTGTTTAAG-AAGGATGGCAC 1011
Query 753 CACAACTGCTGGAAATTCTAGCCAATTAAGTGATGGTGCAGGAGCTGTTCTCCTCATGAG 812
||| |||||||||||||| |||||| ||||||||||||||||||| |||||||| ||||
Sbjct 1012 CACTACTGCTGGAAATTCCAGCCAAGTAAGTGATGGTGCAGGAGCGGTTCTCCTAATGAA 1071
Query 813 GAGAAATGTCGCAATGCAGAAAGGCCTTCCCATTCTTGGTGTATTCAGGACATTTGCTGC 872
||||| ||| |||||||| ||||| |||||| ||||||||||||||||||||||||||||
Sbjct 1072 GAGAAGTGTTGCAATGCAAAAAGGACTTCCCGTTCTTGGTGTATTCAGGACATTTGCTGC 1131
Query 873 AGTTGGTGTGGACCCAGCCATCATGGGGGTTGGACCAGCTGTTGCCATTCCTGCTGCAGT 932
||||||||| ||||| || |||||||| | || ||||| ||||||||||||||||||||
Sbjct 1132 AGTTGGTGTTGACCCTGCAATCATGGGTATCGGTCCAGCAGTTGCCATTCCTGCTGCAGT 1191
Query 933 CAAGGCGGCTGGTTTAGAACTCAATGACATCGACTTGTTTGAGATCAACGAGGCGTTTGC 992
|||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||
Sbjct 1192 TAAGGCGGCTGGTTTAGAACTTGATGACATCGACTTGTTTGAGATCAATGAGGCATTTGC 1251
Query 993 ATCTCAGTTTGTTTATTGTCGGAACAAGTTGGGGA-TTGACCC-G-GAAAAGGTCAATGT 1049
|||||||||||||||||| || ||||| ||||| | ||||||| | ||||| |||||||
Sbjct 1252 ATCTCAGTTTGTTTATTGCCGTAACAAATTGGG-ACTTGACCCAGAGAAAA--TCAATGT 1308
Query 1050 CAATGGAGGGGCCATAGCCATCGGACATCCCTTGGGTGCTACAGGCGC-CAGATGCGTTG 1108
||| ||||| || || ||||| || ||||| ||||| |||||||| || | | || ||||
Sbjct 1309 CAACGGAGGTGCAATGGCCATAGGCCATCCTTTGGGCGCTACAGGAGCGC-GTTGTGTTG 1367
Query 1109 CGACGCTGCTGCATGAGATGAAACGCCTTGGTAAAGACTGTCGTTTTGGCGTAGTGTCAA 1168
| || || |||| ||||||||||||| |||||||||||| |||||||| ||||||||||
Sbjct 1368 CTACATTGTTGCACGAGATGAAACGCCGTGGTAAAGACTGCCGTTTTGGAGTAGTGTCAA 1427
Query 1169 TGTGCATAGGTTCGGGAATGGGAGCAGCCGCTGTGTTTGAGAGAGGAGGCGGTGTGGATG 1228
||||||| || |||| ||||| ||||| ||||||||||||||||||| || || ||||
Sbjct 1428 TGTGCATTGGGACGGGGATGGGTGCAGCAGCTGTGTTTGAGAGAGGAGATGGAGTTGATG 1487
Query 1229 AGCT 1232
||||
Sbjct 1488 AGCT 1491
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68674345560
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5