BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470463
Length=2325
Score E
Sequences producing significant alignments: (Bits) Value
AT1G04780.1 | Symbols: | Ankyrin repeat family protein | chr1:... 3705 0.0
> AT1G04780.1 | Symbols: | Ankyrin repeat family protein | chr1:1340669-1343584
REVERSE LENGTH=2836
Length=2836
Score = 3705 bits (2006), Expect = 0.0
Identities = 2225/2331 (95%), Gaps = 14/2331 (1%)
Strand=Plus/Plus
Query 1 TTGTGTTTCTTAGTTGAGAGGGTTTTAGGTTTCAAGATGATGGAACTTGAGTTGGGTTTC 60
||||||||| ||||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct 501 TTGTGTTTCCCAGTTGAGAGGGTTTTAGGTTTTAAGATGATGGAACTTGAGTTGTGTTTC 560
Query 61 TCCTTGAGAAAGATTGAGTCTTTATAAAGCGCTTTTGTTTGTTATATCCCACTACTGAGA 120
|||||| |||||||||||||||| |||| ||||||||||||||||||| ||| ||||||
Sbjct 561 TCCTTGTGAAAGATTGAGTCTTTGTAAA--GCTTTTGTTTGTTATATCCAACTTCTGAGA 618
Query 121 TATGGC-A--AGCACCATTGATGTTACCAAGTATGGTCACAGTCCTGTTCATCACGCTGT 177
|||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 619 TATGGCAAGCAGCACCATTGATGTTACCAAGTATGGTCACAGTCCTGTTCATCACGCTGT 678
Query 178 TGTCACAAGGGATTATGCCGGTCTCAAGAAACTATTATCCGCTCTTCCGAAGATGCGTGA 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 679 TGTCACAAGGGATTATGCCGGTCTCAAGAAACTATTATCCGCTCTTCCGAAGATGCGTGA 738
Query 238 CCCGTCTGAGGTTAAAAACGAAGCAGCTTCTGTAGCCGAAGAGACCAAAGCGGATTCAAT 297
||||||||||||| |||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 739 CCCGTCTGAGGTTCAAAACGAAGCAGCTTCTGTAGCTGAAGAGACAAAAGCGGATTCAAT 798
Query 298 TGCAGCTGTTATAGACAGGCGTGATGTAGTTAACCGAGACACGGCTCTTCATTTGGCTGT 357
|||||||||||||||||||||||||| ||||| ||||||||||| |||||||| |||||
Sbjct 799 CGCAGCTGTTATAGACAGGCGTGATGTGGTTAATCGAGACACGGCACTTCATTTAGCTGT 858
Query 358 AAAGCTCGGTGATGAGACCTCCGCGGAGATGCTTATGGCTGCAGGAGCTGATTGGAGCTT 417
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 859 AAAGCTCGGTGATGAGACCTCCGCGGAGATGCTTATGGCTGCTGGTGCTGATTGGAGCTT 918
Query 418 GCAGAATGAGCATGGATGGAGCGCTCTACAAGAAGCTATTTGTGGTAGAGAAGAGACGAT 477
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 919 GCAGAATGAGCATGGATGGAGCGCTCTACAAGAAGCTATTTGTGGTAGAGAAGAGAGGAT 978
Query 478 CGCTATGATCATCGTTAGGCATTATCAGCCTTTGGCTTGGGCTAAATGGTGCAGGAGGCT 537
||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 979 CGCTATGATTATCGTTAGGCATTATCAGCCTCTGGCTTGGGCTAAATGGTGCAGGAGGCT 1038
Query 538 GCCTCGGCTTCTTGCTACGATGCATAGAATGAGAGATTTCTATATGGAGATCACTTTCCA 597
|||||||||| | ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1039 GCCTCGGCTTGTGGCTACGATGCATAGAATGAGAGATTTCTACATGGAGATCACTTTCCA 1098
Query 598 TTTCGAGAGTTCTGTTATACCTTTCATTTCTAGAGTGGCTCCGTCGGATACTTATAAGAT 657
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 1099 TTTCGAGAGTTCTGTTATACCTTTCATTTCTAGAGTGGCGCCTTCGGATACTTATAAGAT 1158
Query 658 TTGGAAGAGGGGTGCGAATCTTAGAGCGGATATGACATTGGCTGGGTTTGATGGTTTCAG 717
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1159 TTGGAAGAGGGGTGCGAATCTTAGAGCGGATATGACACTGGCTGGGTTTGATGGTTTCAG 1218
Query 718 GATTCAAAGATCGGATCAGACTATACTTTTTCTTGGAGATGGGTCAGAGGATGGTAAAGT 777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1219 GATTCAAAGATCGGATCAGACTATACTTTTTCTTGGAGATGGGTCAGAGGATGGTAAAGT 1278
Query 778 TCCTTCCGGTTCTCTTCTGATGATATCACATAAGGATAAGGAGATTATGAATGCTCTAGA 837
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 1279 TCCTTCCGGTTCTCTTCTTATGATATCACATAAGGATAAGGAGATCATGAATGCTCTAGA 1338
Query 838 CGGTGCTGGAGCTGCAGCATCAGAAGAAGAAGTTCGTCAAGAAGTGGCTGCAATGTCCAA 897
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1339 CGGTGCTGGAGCTGCCGCATCAGAAGAAGAAGTTCGTCAAGAAGTGGCTGCAATGTCCAA 1398
Query 898 AACTAGCATTTTCAGACCCGGGATCGATGTTACTCAAGCTGTTCTCTTCCCGCAATTAAC 957
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1399 AACAAGCATTTTCAGACCCGGGATCGATGTTACTCAGGCTGTTCTCTTCCCGCAATTAAC 1458
Query 958 ATGGAGGCGTCAAGAGAAGACAGAAATGGTTGGGCAATGGAAAGCAAAAGTGTATGATAT 1017
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1459 ATGGAGGCGTCAAGAGAAGACAGAAATGGTTGGGCAATGGAAAGCAAAAGTGTATGATAT 1518
Query 1018 GCACAATGTAGTTGTTAGTATAAAATCAAGAAGAGTACCGGGTGCAATGACCGATGAGGA 1077
|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 1519 GCACAATGTAGTTGTTAGCATAAAATCAAGAAGAGTACCGGGTGCAATGACTGATGAGGA 1578
Query 1078 GCTTTTCTCAAACACTAATCAAGAAAACGATACAGAAAGTGAGGATCTTGGAGATATCTT 1137
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 1579 GCTTTTCTCAAACACTAATCAAGAAAACGACACAGAAAGCGAGGATCTTGGAGATATCTT 1638
Query 1138 GACGGAAGACGAGAAAAGGCAGTTGGAGTTAGCACTCAAGTTGGATTCACCGGAAGAATC 1197
||||||||||||||| |||||| |||||||||||||||||||||| ||||||||||||||
Sbjct 1639 GACGGAAGACGAGAAGAGGCAGCTGGAGTTAGCACTCAAGTTGGACTCACCGGAAGAATC 1698
Query 1198 TTCTAACAGCGAGAGCTCTAGGATTTCTCAAAAGCAGAATAGTTGTTCTTTCGAGGATCG 1257
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1699 TTCTAACGGCGAGAGCTCTAGGATTTCTCAAAAGCAGAATAGTTGTTCTTTCGAGGATCG 1758
Query 1258 AGAGATTCCAGTAACGGATGGAAACGGGTATTGCAAACAGGAAAAGAAAGGATGGTTCAG 1317
||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 1759 AGAAATTCCAGTAACGGATGGGAACGGGTATTGCAAACAGGAGAAGAAAGGATGGTTCAG 1818
Query 1318 TGGATGGAGGAAACGAGAAGAAGGGCACAAACGAAGTAGTGTTCCGCCAAGAAGTTCACT 1377
||| |||||||||||||| |||||||||| ||||||||||||||| ||||||| || ||
Sbjct 1819 TGGTTGGAGGAAACGAGAGGAAGGGCACAGACGAAGTAGTGTTCCTCCAAGAAACTCGCT 1878
Query 1378 TAGTGTCGATGAGAAAGTAAGCGATCTTCTTGGGGACGATGATTCTCCATCTCGTGGAGG 1437
| |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1879 TTGTGTTGATGAGAAAGTAAGTGATCTTCTTGGGGACGATGATTCTCCATCTCGTGGAGG 1938
Query 1438 AAGACCGATAAAACCAGGAAGACACTCAACGGTTGAGACTGTTGTGAGGGACGAAAAC-C 1496
||||| ||||||||| ||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 1939 AAGACAGATAAAACCGGGAAGACACTCAACGGTTGAGACAGTTGTGAGGAACGAAAACAG 1998
Query 1497 GGGGATCAAGGGATTCATCAAAAGCTTCAACATCAGAAGGCAGTGGAAGTAGCAAGCGAA 1556
|||| | ||| |||||||||||||||||||||||||||||||| ||||| ||||| ||||
Sbjct 1999 GGGGCT-AAGAGATTCATCAAAAGCTTCAACATCAGAAGGCAGCGGAAGCAGCAAACGAA 2057
Query 1557 AAGAAGGAAGCAAAGAGAATGAGTACAAGAAAGGGCTTAGACCGGTTCTTTGGCTTTCAG 1616
||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 2058 AAGAAGGAAACAAAGAGAATGAGTACAAGAAAGGGCTTAGACCAGTTCTTTGGCTTTCTG 2117
Query 1617 AGAGATTCCCATTACAGACAAAAGAACTTCTTCCATTGCTCGATATCCTTGCAAACAAAG 1676
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2118 AGAGGTTCCCATTACAGACAAAAGAACTTCTTCCATTGCTCGATATCCTTGCAAACAAAG 2177
Query 1677 TCAAAGCAATTCGGCGTTTGAGAGAGCTTATGACCACGAAACTACCTTCGGGAACATTCC 1736
|||||||||| || || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2178 TCAAAGCAATCCGACGCTTGAGAGAGCTTATGACCACGAAACTACCTTCGGGAACATTCC 2237
Query 1737 CAGTCAAGGTTGCTATTCCCGTAATTCCTACGATTAGAGTACTCGTCACATTTACCAAGT 1796
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 2238 CAGTCAAGGTTGCTATTCCCGTAATTCCTACAATTAGAGTACTCGTCACATTTACAAAGT 2297
Query 1797 TTGAAGAGCTAGAAGCTATTGAAGATGAGTTTGTTACACCGCCATCTAGTCCAACTTATT 1856
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct 2298 TTGAAGAGCTAGAAGCTATCGAAGATGAGTTTGTTACACCGCCATCTAGTCCAACTTCTT 2357
Query 1857 CGGTGAAGAACAGTCCTAGAGAAGAAATACAGAGCTTATCAAACTCATCCTCCTCATGGT 1916
||||||||||||||||||||||||||| |||||||| ||||||| |||||||||||||||
Sbjct 2358 CGGTGAAGAACAGTCCTAGAGAAGAAACACAGAGCTCATCAAACCCATCCTCCTCATGGT 2417
Query 1917 TTCAATGGATCAAAACACCGAGCCAACGTCCATCAACAAGCTCGAGCTCTGCAGGGTTTA 1976
||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct 2418 TTCAATGGATCAAAACACCAAGCCAACGTCCATCAACAAGCTCGAGCTCTGGAGGGTTTA 2477
Query 1977 ACATTGGTAAAGCCGAAAACGATCAAGACCCATTTGCAATTCCAAGAGGATACAATTGGA 2036
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2478 ATATCGGTAAAGCCGAAAACGATCAAGACCCATTTGCAATTCCAAGAGGATACAATTGGA 2537
Query 2037 TCACAGCTgaagagaagaaaaagaaggtccaagagaagaataaagctaagaagGGCAAGT 2096
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2538 TCACAGCTGAAGAGAAGAAAAAGAAGGTCCAAGAGAAGAATAAAGCTAAGAAGGGCAAGT 2597
Query 2097 CATCTCAGAACAGCTGAAGAAAAAGAAAACACAAGTAAGAAAAGATCTTTCTTTGTCTCT 2156
|||||||||||||||||||||||||||||| |||||||||||||| ||| || |||||||
Sbjct 2598 CATCTCAGAACAGCTGAAGAAAAAGAAAACTCAAGTAAGAAAAGAGCTTGCTCTGTCTCT 2657
Query 2157 GAGAACATAAA-TACTCGAAGTAGGAAAAATCTAGCAGATTAAAAAGTGAAAAACAAATC 2215
||||||||||| ||||| || ||||||||||||||||||| ||||| ||||||||||
Sbjct 2658 GAGAACATAAAATACTCAAATTAGGAAAAATCTAGCAGATAAAAAA---AAAAACAAATG 2714
Query 2216 AAACCTTTTT-CCTGGTTCTTGTACTAATAAACCAGGGGAAAAACAAATTCAATTAAATA 2274
||||||||| |||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct 2715 GAACCTTTTTTCCTGGTTCATGTACTAATAAACCAGGG-AAAAACAAATTCAATTAAATA 2773
Query 2275 TAGCGGGGGAAATTGAGGGAATGATGTGGGTTAATGTTGTTGTGACTTTAT 2325
||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2774 TAGTGGGGGAAATTGAGG-AATGATGTGGGTTAATGTTGTTGTGACTTTAT 2823
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 115411052955
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5