BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470464
Length=2044
Score E
Sequences producing significant alignments: (Bits) Value
AT1G04790.1 | Symbols: | RING/U-box superfamily protein | chr1... 2887 0.0
> AT1G04790.1 | Symbols: | RING/U-box superfamily protein | chr1:1345036-1348451
FORWARD LENGTH=2287
Length=2287
Score = 2887 bits (1563), Expect = 0.0
Identities = 1903/2063 (92%), Gaps = 40/2063 (2%)
Strand=Plus/Plus
Query 1 GATTGATCGATGCTGTTGCTTCTCATCGAACAACTAGGGTTTCGATTCGCACATTCGAAT 60
||||| ||||||| |||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct 1 GATTGTTCGATGCAGTTGCTTCTCATCGAACAACTAGGGTTTCGATTCCCACATTTGAAT 60
Query 61 CAAATTCAATCAGGATGGAGGATAT-TGACATTGACATGGTAATCAGCATACCTGATACT 119
||||||||||| |||||||| || | ||| |||||||||||||| |||||||||||||
Sbjct 61 CAAATTCAATCGGGATGGAGAAT-TCTGATATTGACATGGTAAT---CATACCTGATACT 116
Query 120 CCAGATAGACCCGTACGA-CATCGAGAGGTTAAGAGAAGGCCACAATCTCCAGAACCACC 178
||||||||| | |||| | ||| |||||||||||||||||||||| ||||||| | ||||
Sbjct 117 CCAGATAGATCGGTAC-ACCATAGAGAGGTTAAGAGAAGGCCACATTCTCCAGTAGCACC 175
Query 179 ATTAAGATATCAAAGAGAGGAATACCGTAAT--T-ATCTTAACGGAAGAGCCAGACCAGT 235
||||||||||||||||||||||||||||||| | ||||| |||||||||||||||||||
Sbjct 176 ATTAAGATATCAAAGAGAGGAATACCGTAATCATCATCTTCACGGAAGAGCCAGACCAGT 235
Query 236 CCCTGAAATTGGGGACAACCGGGAAAGTTCTGATACACGAACTGAGAATGGACATCGCTC 295
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 236 CCCTGAAATTGGGGACAACCGGGAAAGTTCTGATACACGAACTGAGAGTGGACATCGCCC 295
Query 296 GCATGCTTCTGGAGGCAATGCTTTGTTTAGGAGAACTGTGGTTGAGCAGGATAAAGGAAA 355
| |||||||| ||||||||||||||||||||||||||| |||||| |||||||||| ||
Sbjct 296 TCGTGCTTCTGTAGGCAATGCTTTGTTTAGGAGAACTGTTGTTGAGAAGGATAAAGGGAA 355
Query 356 ATCCATCTCCACTGATCCACGTGCGGCTCGTGTAGAGAAAAATCCGGTTTTAAATCTGAA 415
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 356 ATCCATCTCCACTGATCCATGTGCGCCTCGTGTAGAGAAAAATCCGGTTTTAAATCTGAA 415
Query 416 TCAACGTGACGGACATGCTCATGTTGCTGCATCGAGATGCTTACCATTTGAAGATATAAG 475
||| ||| ||||||||| |||||||||||||||||||| | ||||| ||||||||||||
Sbjct 416 TCAGCGTAACGGACATGTTCATGTTGCTGCATCGAGATACCAACCATCTGAAGATATAAG 475
Query 476 AGAGTTGCGCACAAGTAATGGTTGTTCTCCTTTACGAGTTGATCATAACTCTTTTATGCT 535
|||||||||||||||||||||||||||||||||||||| |||||||||||| ||| ||||
Sbjct 476 AGAGTTGCGCACAAGTAATGGTTGTTCTCCTTTACGAGGTGATCATAACTCCTTTGTGCT 535
Query 536 GCCTGGGAATAGTAATAAGGGTAAAGAAAAAGCAGATTCTGGCTCTGTTTCTAC-TAGAG 594
||| ||||| |||||||| |||||||||||||||||||||||||||||| || | |||||
Sbjct 536 GCCGGGGAACAGTAATAAAGGTAAAGAAAAAGCAGATTCTGGCTCTGTTCCT-CATAGAG 594
Query 595 AAACAGTTGACCTTTCCAGTGGCGCAAAACCACAGAACAGAGGCACTAAAAGATTGGTGA 654
||||| |||||||||| ||| | || ||||||||||||||||||||||||||||||||||
Sbjct 595 AAACAATTGACCTTTCTAGT-G-GC-AAACCACAGAACAGAGGCACTAAAAGATTGGTGA 651
Query 655 GACATGGCTGCATTTCTCCACATGGAATAGCTGCTAGAGCTAGACAAGCTGCTGATACCA 714
|||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct 652 GACATGGCTGCATTTCTCCACATGAAATAGCAGCTAGAGCTAGACAAGCTGCTGATACCA 711
Query 715 ATTCCAAGGACACAGTTAGTGTTGAACTGGAACTAGCTCCTGAAACTGCATCTTTGATTG 774
||||| | |||||| |||||||||||| |||||||||| ||||||||||||||| |||||
Sbjct 712 ATTCCTATGACACACTTAGTGTTGAACAGGAACTAGCTTCTGAAACTGCATCTTCGATTG 771
Query 775 GCATAAGAGAGATTGTTTCTGAAAATGATATTCACGGAAGAGCTAGAGGCAAAAGACCTG 834
||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct 772 GCATAAGAGAGATTGTTCCTGAAAGTGATATTCACGGAAGAGCTAGAGGCAAAAGACCTG 831
Query 835 AAATTTCTCGTAGCAGGGTGGCGAGTAGAGACGG-TTCAGAGGGGTGGGTTAGTACACGT 893
|||||||| |||||||||||||||||||||| || || ||||||||||||||||| |||
Sbjct 832 AAATTTCTAGTAGCAGGGTGGCGAGTAGAGATGGCTT-GGAGGGGTGGGTTAGTACGCGT 890
Query 894 AACCGGAAA-TTAAATATGGACCAAGAATTGAATCAGAGGGATGAGAGTGACACACGCGG 952
|||| |||| ||||||||||| || ||| ||||||| |||||||||||| ||||||||||
Sbjct 891 AACC-GAAATTTAAATATGGAACATGAAATGAATCATAGGGATGAGAGTAACACACGCGG 949
Query 953 AATTTGTAGCTCTGTCT-CCAGACTTGATGTGCATGAAACCGGTGTAGTTGAAAGAG-AA 1010
||||||||| ||||| | ||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 950 AATTTGTAGTTCTGT-TACCAGACTTGATGTGCGTGAAACCGGTGTAGTTGAAAGAGAAA 1008
Query 1011 GCTAGACAACAACGACGGCGGAAAAATGGATTTACTACTTCAACGGCTTCAAATGAGCCA 1070
| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1009 G-TAGACAACAGCGACGGCGGAAAAATGGATTTACTACTTCAACGGCTTCAAATGAGCCA 1067
Query 1071 GAAGTTACTGTTATTAGATCTTCTGGGGAACCATCTAGTTCAAGGCCACCAAGAATCCAG 1130
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1068 GAAGTTACTGTTAATAGATCTTCTGGGGAACCATCTAGTTCAAGGCCACCAAGAATCCAG 1127
Query 1131 AATCATTTAAGACA----C--GGCACACAAGTGTTGGAAATTGAAGATTCATCTCCTGAA 1184
|||||| ||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 1128 AATCATCTAAGACACTGGCATGGCACACAAGTGTTGGAAATTGAAGATTCATCTCCTGAA 1187
Query 1185 GTACGGGTCTTCCGGGGTCCTAGACGTGTTGAAAACAATGTATCTGATGTGAATGTAAGA 1244
||| |||||||||||||||| |||||||||||||| ||||||||||||||||| |||||
Sbjct 1188 GTAAGGGTCTTCCGGGGTCCCAGACGTGTTGAAAATGATGTATCTGATGTGAATATAAGA 1247
Query 1245 CAAATAGAAGCAGATGAGATATTGGCCCGTGAATTGCAAGAACAGCTGTACCAAGAAGAG 1304
||||||||||||||||||||| ||||||||||||| |||||||||||||||| |||||||
Sbjct 1248 CAAATAGAAGCAGATGAGATACTGGCCCGTGAATTACAAGAACAGCTGTACCGAGAAGAG 1307
Query 1305 ACCTTGATCAGACACCAGCAGATTGATGAAAACATAGCAAGGTTGCTGGAACAAGAAGAG 1364
| |||||||||||| ||||||| ||||||| |||||| |||| | ||||||||||||||
Sbjct 1308 TCGTTGATCAGACACGAGCAGATCGATGAAATCATAGCCAGGTCGATGGAACAAGAAGAG 1367
Query 1365 AATTCTATTCGTGCTTCTTCTAGTCGTTCTTCTTCTACTCGT-TCTACCCGAAACTCTAA 1423
|||||| | || |||||||||||||| | ||||||||||| | |||||||| ||||||
Sbjct 1368 AATTCTCTCCGGGCTTCTTCTAGTCG---TGCTTCTACTCGTAT-TACCCGAAGCTCTAA 1423
Query 1424 TACCATTACAGCAAA-CCGAGGTGGGAGAAGTCGCCTGGAAGCGCGACTGCAACAACATT 1482
|||||| ||||||| || | |||||||||||||||||||||| ||||||||||||||||
Sbjct 1424 TACCATCGCAGCAAATCC-ACGTGGGAGAAGTCGCCTGGAAGCACGACTGCAACAACATT 1482
Query 1483 CTTCAAGGAGGCGATTGAATCCTCCACAGGCTCGTGCTCCTGTTAGAGCACCAACACGGG 1542
|||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1483 CTTCAAGGAGGCGATTCAATCCTCCACAGGCTCGTGCTCCTGTTAGAGCACCAGCACGGG 1542
Query 1543 GTCGAGGTTATCGTTTAGGCCGTGCATCTGCTTCACTACACACAGCTCTGAATCTCAGTT 1602
|||||||||||||||||||| |||||||||||||||||| |||||||||||| ||||||
Sbjct 1543 GTCGAGGTTATCGTTTAGGCGGTGCATCTGCTTCACTACGTACAGCTCTGAATTTCAGTT 1602
Query 1603 TTCC-ATATGATATGGGCATAGAATCGAGAATGGATCTTCTGGAGGGATTAGAGAATGCT 1661
|||| || |||||||||| |||| |||||||||||| ||||||||| |||||||||||||
Sbjct 1603 TTCCAAT-TGATATGGGCTTAGACTCGAGAATGGATATTCTGGAGGAATTAGAGAATGCT 1661
Query 1662 ATTGGACACTCCATTAACAATAGTAATCTTCTTCATATGGATCGTGACTTTACTGAAGAT 1721
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 1662 ATTGGACACTCCATTACCAGTAGTAATCTTCTTCATATGGATCGTGACTTTACTGAAGAT 1721
Query 1722 GATTACGAATTGCTGCTAGCTCTTGATGAAAACAACCATCGACATGGCGGTGCTTCTACT 1781
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1722 GATTACGAATTGCTGCTAGCTCTTGATGAAAACAACCATCGACATGGCGGTGCTTCTGCT 1781
Query 1782 CATCGCATTAACAATTTGCCAGAGTCTACAGTTCAAAATGATAATTTTCAAGAAACTTGT 1841
||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1782 AATCGCATTAACAACTTGCCAGAGTCTACAGTTCAAACTGATAATTTTCAAGAAACTTGT 1841
Query 1842 GTTATTTGTCTGGAAACACCGACGATCGGAGACACCATACGTCATCTTCCTTGTTTGCAC 1901
||||| ||||||||||| |||| ||| |||||||||||||||||||||||||||||||||
Sbjct 1842 GTTATCTGTCTGGAAACTCCGAAGATTGGAGACACCATACGTCATCTTCCTTGTTTGCAC 1901
Query 1902 AAATTTCACAAAGATTGCATTGATCCATGGCTAGGACGGAGTAAATCATGTCCGGTTTGC 1961
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1902 AAATTCCACAAGGATTGCATTGATCCATGGCTAGGACGGAGTAAATCATGTCCGGTTTGC 1961
Query 1962 AAATCCTCAGTTACTTGACCAGGTTTTCAAGCTCATCGGGGAATGTAACAAATTTACCAT 2021
||||||||||||||||||| |||||||||| ||||||| |||| | | ||| | |||||
Sbjct 1962 AAATCCTCAGTTACTTGACAAGGTTTTCAAATTCATCGGAGAATTTGA-AAACT-ACCAT 2019
Query 2022 TTTACCCTTCCAAGCCGGTGGAT 2044
||||||||||||| ||||| |||
Sbjct 2020 TTTACCCTTCCAAACCGGTCGAT 2042
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 101304699810
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5