BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470465
Length=820
Score E
Sequences producing significant alignments: (Bits) Value
AT1G04800.1 | Symbols: | glycine-rich protein | chr1:1348452-1... 1038 0.0
> AT1G04800.1 | Symbols: | glycine-rich protein | chr1:1348452-1349286
REVERSE LENGTH=835
Length=835
Score = 1038 bits (562), Expect = 0.0
Identities = 747/834 (90%), Gaps = 21/834 (3%)
Strand=Plus/Plus
Query 1 CAATAGCTTATAATATTTCAACTACAAACATTTTAAGTTTCCACTAATC-ATGGGTCTAA 59
||||||||| |||||||| |||||||||||||||||||||||||||| | ||||||||||
Sbjct 1 CAATAGCTTCTAATATTTTAACTACAAACATTTTAAGTTTCCACTAA-CAATGGGTCTAA 59
Query 60 TCGCCTGTAGAGCGTGTGTGTTTGTTTTGGTATTTGCTTTGGTCACAAATTTTACTATGG 119
||||| ||| || | |||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct 60 TCGCCGGTAAAGTGCGTGTGTTTGTTTTGGTGTTTGCTTTGGTCACAGATTTTACTATGG 119
Query 120 GAGAAACAGAGTTTGGTGATGAGAAGCCCTTGTTTTCTCACCCTCACCCTCGTCCTCTCC 179
||||| ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct 120 GAGAAGCAGAGTTTGGTGATGAGAAGCCCTTGTTTCCTCACCCTCACCCTCATCCTCTCC 179
Query 180 TCCACAAGAAGGGCTTTAAAAAAGGCTTCGGCGACTTA------GGTGGTGGTATCAGCG 233
|||||||||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct 180 TCCACAAGAAGGGCTTTAAAAAAGAATTCGGCGACTTAGGTGGTGGTGGTGGTATCAGCG 239
Query 234 GAGGAGGCGGCTTTGGAGCAGGTGGCGGTTGGATTGGAGGCAGTGTTGGAGGCTTTGGTG 293
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 GTGGAGGCGGCTTTGGAGCAGGTGGCGGTTGGATTGGAGGCAGTGTTGGAGGCTTTGGTG 299
Query 294 GAGGAATAGGCGGTGGATTTGGTGGAGGAGGATTCGGAGGTGGAGTCGGAAAAGGAGTTG 353
||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 300 GAGGAATAGGCGGTGGATTTGGTGGAGGAGGATTCGGAGGTGGAGCCGGTAAAGGAGTTG 359
Query 354 ATGGCGGAG-CTGGTAAAGGAGTTGATGGTGGAGCCGGAAAAGGATTTGATGGAGGAATC 412
| || || | || ||||||||||| ||||||||||| |||||| |||| || ||| |
Sbjct 360 ACGGTGGCTTC-GGAAAAGGAGTTGACGGTGGAGCCGGTAAAGGAGTTGACGGTGGAGCC 418
Query 413 GGTAAAGGAGTTGACGGTGGAGCCGGAAAAGGATTTGACGGAGGAGCCGGAAAAGGATTT 472
|| |||||| |||| || |||| || |||||| ||||||| ||||||||||||||||||
Sbjct 419 GGGAAAGGATTTGATGGAGGAGTTGGCAAAGGAGTTGACGGTGGAGCCGGAAAAGGATTT 478
Query 473 GATGGAGGAGCCGGTAAAGGATTTGATGGCGGAGTCGGAAAAGGATTTGATGGCGGAGTC 532
|||||||||| ||| ||||||||||| || ||| ||||||||||| |||| || ||||||
Sbjct 479 GATGGAGGAGTCGGCAAAGGATTTGAGGGAGGAATCGGAAAAGGAATTGAGGGAGGAGTC 538
Query 533 GGTAAAGGATTTGACGGCGGAGCCGGTAAGGGAGTTGACGGTGGAGCCATTGGAGGAATC 592
|| |||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 539 GGAAAAGGATTTGACGGTGGAGCAGGTAAAGGAGTTGACGGTGGAGCCATTGGAGGAATC 598
Query 593 GGCGGTGGAGCCGGTAAAGAAATTGGCGGAGGAATCGGCGGTGGAGGTCACTGAGAATTT 652
||||| |||||||||||||||||||| |||||||| ||||| ||||||||||||||||||
Sbjct 599 GGCGGAGGAGCCGGTAAAGAAATTGGTGGAGGAATTGGCGGCGGAGGTCACTGAGAATTT 658
Query 653 GTTAAACCGTAATGTGCATTGATAAGAAGCTAAAATCCAATGCATGTAATCTCTAATTCG 712
||| ||||||||||||||||||| || |||||||||||||||||||| || | ||| |
Sbjct 659 GTTTAACCGTAATGTGCATTGATGAGGAGCTAAAATCCAATGCATGTCAT-T-TAA---G 713
Query 713 TTAA--AATT--TAA-ATATGCAATAATAACTGAAATGTATGTCATTTCTCTTTAGTTTG 767
|| |||| | | ||||| || ||||||||||||||||||| |||||||||||||||
Sbjct 714 AAAACTAATTCGTTATATATGTAACAATAACTGAAATGTATGTCGTTTCTCTTTAGTTTG 773
Query 768 TTTTCCTCTTTGAA-ATGATTGTATCTTGCTTCTTCGTGTAAATAAAGTGAATA 820
|||| ||||||||| |||||||||||||||||||||||| || |||||||||||
Sbjct 774 TTTTACTCTTTGAATATGATTGTATCTTGCTTCTTCGTGCAAGTAAAGTGAATA 827
Score = 196 bits (106), Expect = 2e-49
Identities = 152/175 (87%), Gaps = 0/175 (0%)
Strand=Plus/Plus
Query 332 GGTGGAGTCGGAAAAGGAGTTGATGGCGGAGCTGGTAAAGGAGTTGATGGTGGAGCCGGA 391
||||||| ||| |||||| ||||||| |||| ||| ||||||||||| ||||||||||||
Sbjct 410 GGTGGAGCCGGGAAAGGATTTGATGGAGGAGTTGGCAAAGGAGTTGACGGTGGAGCCGGA 469
Query 392 AAAGGATTTGATGGAGGAATCGGTAAAGGAGTTGACGGTGGAGCCGGAAAAGGATTTGAC 451
|||||||||||||||||| |||| |||||| |||| || ||| |||||||||| ||||
Sbjct 470 AAAGGATTTGATGGAGGAGTCGGCAAAGGATTTGAGGGAGGAATCGGAAAAGGAATTGAG 529
Query 452 GGAGGAGCCGGAAAAGGATTTGATGGAGGAGCCGGTAAAGGATTTGATGGCGGAG 506
||||||| ||||||||||||||| || ||||| ||||||||| |||| || ||||
Sbjct 530 GGAGGAGTCGGAAAAGGATTTGACGGTGGAGCAGGTAAAGGAGTTGACGGTGGAG 584
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39936146865
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5