BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470467
Length=1543
Score E
Sequences producing significant alignments: (Bits) Value
AT1G04830.2 | Symbols: | Ypt/Rab-GAP domain of gyp1p superfami... 2346 0.0
> AT1G04830.2 | Symbols: | Ypt/Rab-GAP domain of gyp1p superfamily
protein | chr1:1358574-1362019 REVERSE LENGTH=1763
Length=1763
Score = 2346 bits (1270), Expect = 0.0
Identities = 1375/1425 (96%), Gaps = 9/1425 (1%)
Strand=Plus/Plus
Query 1 ACGAGCTTCCATTAATCACCGACTCGCAGAACCTTTCTCTC-TT---TC---TCGAAACC 53
|||| |||||||||||||||||||||||||||||||||||| || || | ||||||
Sbjct 59 ACGAACTTCCATTAATCACCGACTCGCAGAACCTTTCTCTCATTAAATCTTGTGGAAACC 118
Query 54 TCGGAAATTGAATCTGCGCGAGTTTCAATCGATTGATTGATCCATCAAACACTAGAGATG 113
|||||||||||||||||| |||||||||||| ||||| |||||||||||| |||||||||
Sbjct 119 TCGGAAATTGAATCTGCGTGAGTTTCAATCGCTTGATCGATCCATCAAACCCTAGAGATG 178
Query 114 GTGAGGAAAAAGGTACCGGAATGGCTTAATAGCACCATGTGGTCTACTCCTCCTCCGCCG 173
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 GTGAGGAAAAAGGTACCGGAATGGCTTAATAGCACCATGTGGTCTACTCCTCCTCCGCCA 238
Query 174 TCTTCTTACGACGACGGTCTCCTCCGCCATTCCCCCGTCACTAAAATGAAGGAAGAGGCA 233
|||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 239 TCTTCTTACGACGATGGTCTCCTCCGTCATTCCCCCGTCACTAAGATGAAGGAAGAGGCA 298
Query 234 CAATCGATTTCCGTTGCTCCCAGGCTTAATTCTGCTCCTCCGCCTTCTTCC-ACTGCTTC 292
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 299 GAATCGATTTCCGTTGCTCCCAGGCTTAATTCTGCTCCTCCGCCTTCTTCCAAC-ACTTC 357
Query 293 GGTTCCATCGCCGTCGCATAGACCGAGGAACGGTAGCAGTATCTCTGGCGGTAGTGGCGA 352
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 358 GGTTCCATCGCCGTCGCATAGACCGAGGAACGGTAACAGTATCTCTGGCGGTAGTGGCGA 417
Query 353 ATATGGAAACTCCGTTGGTCCTTCCGCCGAAGATTTTTCCCGCCAGGCTCATGTCTCAGC 412
||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 418 ATATGGACATTCCGTTGGTCCTTCCGCCGAAGACTTTTCCCGCCAGGCTCATGTCTCAGC 477
Query 413 GGAGTTATCGAAGAAGGTGATCAACATGAAGGAATTGAGGAGTCTAGCTTTACAAAGTTT 472
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 478 GGAGTTGTCGAAGAAGGTGATCAATATGAAGGAATTGAGGAGTCTAGCTTTACAAAGTTT 537
Query 473 GCCGGATTCTCCTGGTATCCGTTCTATTGTCTGGAAGCTTTTGCTTGGTTACTTGCCACC 532
|||||||||||| || |||||||||| |||||||||||||||||||||||||||||||||
Sbjct 538 GCCGGATTCTCCCGGGATCCGTTCTACTGTCTGGAAGCTTTTGCTTGGTTACTTGCCACC 597
Query 533 TGAACGTTCACTCTGGTCAACTGAGTTGAAACAAAAGAGATCCCAATACAAGCACTACAA 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 TGAACGTTCACTCTGGTCAACTGAGTTGAAACAAAAGAGATCCCAATACAAGCACTACAA 657
Query 593 GGATGAGCTTCTGACGAGTCCTTCAGAAATCACATGGAAAATGGTGAGGTCAAAGGGGTT 652
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 GGATGAGCTTCTGACGAGTCCTTCAGAAATCACATGGAAAATGGTGAGGTCAAAGGGGTT 717
Query 653 TGACAACTATGACTTGAAGAGTGAAAGCCGATGCATGCTTGCCCGATCCAGAATAACTGA 712
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 718 CGACAACTATGACTTGAAGAGTGAAAGCCGATGCATGCTTGCCCGATCCAGAATTACTGA 777
Query 713 CGAGGACCATCCTTTAAGTCTAGGGAAGGCGAGCATCTGGAATACTTACTTCCAGGATAC 772
|||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||
Sbjct 778 CGAGGACCATCCTTTAAGCCTAGGGAAGGCGAGTATCTGGAATACATACTTCCAGGATAC 837
Query 773 TGAGACCATAGAACAAATAGACAGAGATGTCAAGCGTACACATCCAGACATACCCTTTTT 832
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 GGAGACCATAGAACAAATAGACAGAGATGTCAAGCGTACACATCCAGACATACCCTTTTT 897
Query 833 CTCCGCTGAATCATCGTTTGCGCGTTCTAATCAGGAATCTATGAAGAATATATTACTTGT 892
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 CTCCGGTGAATCATCGTTTGCGCGTTCTAATCAGGAATCTATGAAGAATATATTACTTGT 957
Query 893 ATTTGCGAAGTTAAATCAAGGCATCAGATATGTTCAAGGGATGAACGAAATTTTAGCTCC 952
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 958 ATTTGCGAAGTTAAACCAAGGCATCAGATATGTTCAAGGGATGAACGAAATTTTAGCACC 1017
Query 953 TATCTTTTATGTATTCCGTAACGACCCTGATGAAGATAGTTCATCCCATGCTGAAGCAGA 1012
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 TATCTTTTATGTATTCCGTAACGACCCTGATGAAGATAGTTCATCCCATGCTGAAGCAGA 1077
Query 1013 TGCATTCTTTTGCTTTGTTGAATTGTTGAGTGGATTTCGAGACTTCTACTGTCAACAACT 1072
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 TGCATTCTTTTGCTTTGTTGAATTGTTGAGTGGATTTCGAGACTTCTACTGTCAACAACT 1137
Query 1073 CGACAATAGTGTGGTGGGAATCCGATCTGCAATTACGAGGCTCTCACAACTTGTGAGAAA 1132
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1138 CGACAATAGTGTGGTGGGAATCCGATCTGCAATTACGAGGCTCTCACAACTTGTGAGGAA 1197
Query 1133 GCATGATGAGGAACTGTGGCGTCATCTAGAGATCACCACAAAAGTCAATCCACAGTTTTA 1192
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||
Sbjct 1198 GCATGATGAGGAACTGTGGCGTCATCTAGAGATCACCACGAAAGTAAATCCACAGTTCTA 1257
Query 1193 TGCATTTAGGTGGATCACTCTCCTCCTTACTCAAGAGTTTAGTTTCTTTGACTGTCTTCA 1252
||||||||||||||||||||||||||| || ||||||||||||||||||||| |||||||
Sbjct 1258 TGCATTTAGGTGGATCACTCTCCTCCTAACACAAGAGTTTAGTTTCTTTGACAGTCTTCA 1317
Query 1253 TATATGGGATGCACTCTTAAGTGACCCTGAAGGTCCGCTGGAAAGCTTACTGGGGATATG 1312
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1318 CATATGGGATGCACTCTTAAGCGACCCTGAAGGTCCGCTGGAAAGCTTACTGGGGATATG 1377
Query 1313 TTGTGCGATGCTGGTACTGGTGAGGAGGAGGCTAATCGCCGGGGATTTCACGTCGAATAT 1372
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1378 TTGTGCGATGCTGGTACTGGTGAGGAGGAGGCTAATCGCTGGGGATTTCACGTCGAATAT 1437
Query 1373 GAAGTTACTTCAACACTATCCAACTACAAACATCAGCCATCTCTT 1417
|||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1438 GAAGTTACTTCAACACTATCCAACTACAAACATCAGTCATCTCTT 1482
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76154226765
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5