BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470469
Length=1526
Score E
Sequences producing significant alignments: (Bits) Value
AT1G04850.1 | Symbols: | ubiquitin-associated (UBA)/TS-N domai... 2394 0.0
> AT1G04850.1 | Symbols: | ubiquitin-associated (UBA)/TS-N domain-containing
protein | chr1:1365118-1368844 REVERSE LENGTH=1573
Length=1573
Score = 2394 bits (1296), Expect = 0.0
Identities = 1464/1541 (95%), Gaps = 27/1541 (2%)
Strand=Plus/Plus
Query 1 ACTGGAAACGATTGAACCGACCCTACGTCTTCC-T-CTCTC--CACAAGCAACGAACGGA 56
|||| |||||||||||||||||||| ||||||| | ||||| | |||||||||||||||
Sbjct 1 ACTGAAAACGATTGAACCGACCCTATGTCTTCCTTCCTCTCTACCCAAGCAACGAACGGA 60
Query 57 CTTCCCCATTTAAGGGAAGGGAAAGAAAGACAATCGAGTCTCGAGTCTGTGAAACCAAGT 116
|||||||| || | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CTTCCCCA-TT-A---AAGGGAAAGAAAGACAATCGAGTCTCGAGTCTGTGAAACCAAGT 115
Query 117 CT----A--GAGAGATTGTAGCCATGGCAGGAGTATCGCTCAAGTGTGGCGATTGTGGGA 170
|| | | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 116 CTCGCGAGTGGGAGATTGTAGCCATGGCAGGAGTATCGCTCAAGTGTGGCGATTGTGGGA 175
Query 171 CGCTTCTGAAGTCCGTGGAGGAGGCTCAGGAGCACGCCGAGCTCACCTCTCACTCCAATT 230
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 176 CGCTGCTGAAGTCCGTGGAGGAGGCTCAGGAGCACGCTGAGCTCACCTCTCACTCCAATT 235
Query 231 TCGCCGAGTCCACTGAGGCCGTGCTCAATCTCGTTTGTACTACTTGCAGCAAGCCTTGTC 290
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 236 TCGCCGAGTCCACTGAGGCCGTGCTCAATCTCGTTTGTACTACTTGCACCAAGCCTTGTC 295
Query 291 GCTCTAAAACCGAAAGCGATTTGCACACGAAAAGAACAGGGCATACTGAGTTTGTAGATA 350
|||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 296 GCTCAAAAATCGAAAGCGATTTGCACACGAAAAGAACAGGGCATACTGAGTTTGTAGATA 355
Query 351 AGACATTGGAGACGGTAAAACCCATCAGCTTGGAAGCTCCTAAGGTTGCTATGGAGATTG 410
||||||||||||| | |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 356 AGACATTGGAGACAATCAAACCCATCAGCTTGGAAGCTCCTAAGGTTGCCATGGAGATTG 415
Query 411 ACGATAATGCTAGTGGTAGTGGAGAGGCTGCTGAAGAGATGGTTGTTCCAGACGTTGACA 470
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 416 ATGATAATGCTAGTGGTAGTGGAGAGGCTGCAGAAGAGATGGTTGTTCCAGACGTTGACA 475
Query 471 ATAAAATTCTCGAGGAACTTGAAGCAATGGGCTTCCCTAAAGCTCGTGCTACCCGAGCAC 530
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 476 ATAACATTCTCGAGGAACTTGAAGCGATGGGCTTCCCTAAAGCTCGTGCTACCCGAGCAC 535
Query 531 TCCATTACTCTGGTAATGCCAGTCTCGAGGCTGCAGTTAATTGGGTGGTGGAGCATGAGA 590
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 536 TCCATTACTCTGGTAATGCCAGTCTTGAGGCTGCAGTTAATTGGGTGGTGGAGCATGAGA 595
Query 591 ATGATCCTGACGTAGATGAAATGCCAAAGGTGCCTGCCAACTCCAATGTTGGGCCTGCTA 650
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct 596 ATGATCCTGACGTAGATGAAATGCCAAAGGTGCCTTCCAACTCCAATGTTGGGCCTGCCA 655
Query 651 AACCTGCTCTTACGCCAgaagaagtgaagctaaaagcacaagaattaagggaacgtgcgc 710
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 656 AACCTGCTCTTACGCCAGAAGAAGTGAAGCTAAAAGCACAAGAATTAAGGGAACGTGCAC 715
Query 711 ggaagaagaaagaagaggaagaaaaacggatggaacgtgaaagagagaaggagcgaaTTA 770
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 716 GGAAGAAGAAAGAAGAGGAAGAAAAACGGATGGAACGTGAAAGAGAGAAGGAGCGAATTA 775
Query 771 GGATTGGCAAGGAACTCTTAGAAGCAAAGCGGATGGAAGAAGTAAACGAAAGGAAACGTC 830
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 776 GGATTGGCAAGGAACTCTTAGAAGCAAAGCGGATGGAAGAAGTAAACGAAAGAAAACGTC 835
Query 831 TAATGTTTTTGCGTAAAGCTGAGAAAGAAGAAGAAAAACGGGCTAGGGAAAAGATCCGTC 890
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 836 TTATGTTTTTGCGTAAAGCTGAGAAAGAAGAAGAAAAACGGGCTAGGGAAAAGATCCGTC 895
Query 891 AAAAGCTTGAAGAAGACAAGGCTGAAAGAAGGCGAAAACTCGGATTGCCTCCGGAAGATC 950
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 896 AAAAGCTTGAAGAAGACAAGGCTGAAAGAAGGCGAAAACTCGGATTGCCTCCGGAAGATC 955
Query 951 CTGCAACTGCAGCTGCAAAACCCTCGGTGCCAGTTGCGGAGGAGAAGAAGATTTCATTGC 1010
||||||||||||||||||||||||| |||||||||| ||||||||||||| || ||||||
Sbjct 956 CTGCAACTGCAGCTGCAAAACCCTCAGTGCCAGTTGTGGAGGAGAAGAAGGTTACATTGC 1015
Query 1011 CAATTAGACCGGCCACAAAGACTGAACAAATGAGAGAATGCTTGAGGTCCCTTAAGCAAA 1070
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1016 CAATTAGACCGGCCACAAAGACTGAACAAATGAGAGAATGCTTGAGGTCCCTTAAGCAAG 1075
Query 1071 CCCACAAGGAGGATGATGCTAAAGTGAAGAGAGCGTTCCAGACTCTGCTGACTTACATGG 1130
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1076 CCCACAAGGAGGATGATGCTAAAGTGAAGAGAGCGTTCCAGACTCTGCTGACTTACATGG 1135
Query 1131 GAAATGTCGCTAAGAATCCAGATGAAGAAAAATTCCGGAAAATTAGACTGACCAATCAAA 1190
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||
Sbjct 1136 GAAATGTCGCTAAGAATCCAGATGAGGAAAAATTCCGGAAAATTAGACTCACCAACCAAA 1195
Query 1191 CCTTTCAGGAAAGGGTTGGTTCACTGAGAGGAGGCATAGAGTTCATGGAGCTATGTGGGT 1250
| |||||||||||||||||||| || ||||| |||||||||||||||||||||||||| |
Sbjct 1196 CATTTCAGGAAAGGGTTGGTTCGCTAAGAGGGGGCATAGAGTTCATGGAGCTATGTGGAT 1255
Query 1251 TTGAGAAAATTGAAGGAGGAGAGTTCTTGTTCTTGCCTAGAGACAAGATCGATTCCGCCA 1310
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 1256 TTGAGAAAATTGAAGGAGGAGAGTTCTTGTTCTTACCTAGAGACAAGATCGATTCAGCCA 1315
Query 1311 TCATCAACTCAGCTGGAACAGAGCTCAATTCCGCCATCAACAACCCTTTCTTTGGAGTTC 1370
|||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 1316 TCATAAACTCAGCTGGAACAGAACTCAACTCCGCCATCAACAACCCTTTCTTTGGAGTTC 1375
Query 1371 TTTAAATCGATGCCA-T-CT-ATGAAACTATaaaaaaaaaaTTCGGATATCAAC-ATGAA 1426
|||||||| ||||| | || ||||||||| |||||||| |||||||||| | |||||
Sbjct 1376 TTTAAATCCATGCCTCTTCTTATGAAACTA-AAAAAAAA--TTCGGATATCT-CTATGAA 1431
Query 1427 TAATACTGGCTAGTGACATTCTTTTTGTTTTTGTTTAA-TAAGTGAAAAATTCGGAGAGC 1485
||||||||||||||||||||||||||||||| | |||| |||||| |||||| |||||||
Sbjct 1432 TAATACTGGCTAGTGACATTCTTTTTGTTTT-GCTTAAATAAGTGGAAAATTTGGAGAGC 1490
Query 1486 AGAACTAAAAGATATTCAATTACTGTTTAATCCCTCTTGTT 1526
||||||||||| | | || |||||||||||||| |||||||
Sbjct 1491 AGAACTAAAAGCT-TCCA-TTACTGTTTAATCCGTCTTGTT 1529
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75300817500
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5