BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470473
Length=1519
Score E
Sequences producing significant alignments: (Bits) Value
AT1G04880.1 | Symbols: | HMG (high mobility group) box protein... 2379 0.0
> AT1G04880.1 | Symbols: | HMG (high mobility group) box protein
with ARID/BRIGHT DNA-binding domain | chr1:1375961-1379185
REVERSE LENGTH=1587
Length=1587
Score = 2379 bits (1288), Expect = 0.0
Identities = 1445/1522 (95%), Gaps = 6/1522 (0%)
Strand=Plus/Plus
Query 1 AGAAACCAAAGCTTTCATTTTTATGAATATTCAAGGGTAAATGGTTAGCAAAGGAATGGC 60
|||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 41 AGAAACCAAAGCTTTCATTTTTATGAATATTCAAGGGTGAATAGTTAGCAAAGGAATGGC 100
Query 61 ATCAAGCTCTTGTCTCAAGCAAGGGTCAGTGCCAATGAACAATGTTTGTGTTACCCCTGA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 101 ATCAAGCTCTTGTCTCAAGCAAGGGTCAGTGCCAATGAACAATGTTTGTGTTACCCCTGA 160
Query 121 AGCAACGTATGAGGCTGTGGTTGCAGACCCTAGGCTTTTCATGTCTTCCTTGGAAAGGCT 180
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 161 AGCAACGTATGAGGCTGTGGTTGCAGACCCTAGGCTTTTCATGACTTCCTTGGAAAGGCT 220
Query 181 GCACTCTCTCTTGGGTACTAAATTCATGGTTCCAATCATAGGAGGAAGAGATTTGGACTT 240
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 221 GCACTCTCTCTTGGGTACTAAATTCATGGTTCCGATCATAGGAGGAAGAGATTTGGACTT 280
Query 241 GCACAAGCTTTTCGTTGAGGTAACCTCTCGTGGTGGAATCAATAAGATACTTAATGAAAG 300
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 281 GCACAAGCTTTTCGTTGAGGTAACCTCACGTGGCGGAATCAATAAGATACTTAATGAAAG 340
Query 301 GAGATGGAAAGAAGTAACTGCTACATTTGTCTTTCCTCCAACGGCAACAAACGCATCGTA 360
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 341 GAGATGGAAAGAAGTAACTGCTACATTTGTCTTTCCTCCAACTGCAACAAACGCATCATA 400
Query 361 TGTTTTGCGCAAATACTACTTCTCGCTGCTGAACAATTATGAGCAAATCTATTTCTTCAG 420
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 401 TGTTCTGCGCAAATACTACTTCTCGCTGCTGAACAATTATGAGCAAATCTATTTCTTCAG 460
Query 421 ATCCAGTGGCCAGATTCCTCCAGACTCTCTACAGA-TCCCATCTGCTAGACCAGGCCTTA 479
||| | ||| |||||||||||||||||| | |||| ||| ||||||||||||| || |||
Sbjct 461 ATCTAATGGTCAGATTCCTCCAGACTCTATGCAGAGTCC-ATCTGCTAGACCATGCTTTA 519
Query 480 TGCACGGAGCCATTAGACCTTCACAAGAACTTCAAGCTCTAACCTTTACCCCACAGCCCA 539
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 520 TTCAGGGAGCCATTAGACCTTCACAAGAACTTCAAGCTCTAACCTTTACCCCACAGCCCA 579
Query 540 AGATCAATTCTGAAGAGTTCCCCGGAGGACCTGTTGCTGGATCAAATGTGATTGGAGTGA 599
|||||||| ||| ||| |||| ||||||| | ||||||||||||||||| |||||||||
Sbjct 580 AGATCAATACTGCAGAATTCCTCGGAGGATCACTTGCTGGATCAAATGTGGTTGGAGTGA 639
Query 600 TCGATGGAAAATTCGAAAGTGGTTACCTTGTAACTGTAACAATTGGATCAGAGCAGCTTA 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 640 TCGATGGAAAATTCGAAAGTGGTTACCTTGTAACTGTAACAATTGGATCAGAGCAGCTTA 699
Query 660 AAGGAGTTCTGTTTCAGCTTCTTCCTCAGAACACAGTTGCTCATCAAACTCCGCAACAGA 719
|||||||||||| ||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 700 AAGGAGTTCTGTATCAGCTTCTTCCTCAGAACACAGTTTCTTATCAAACTCCGCAACAGA 759
Query 720 GTCATGGTGTCGTCCCCAACACT-TGGAACAATTCTGCCAATCCCCAGGGGGTTATGGGA 778
||||||||||| |||| |||||| || |||| |||||||||||| ||||||||| |||
Sbjct 760 GTCATGGTGTCCTCCCGAACACTCTG-AACATTTCTGCCAATCCTCAGGGGGTTGCAGGA 818
Query 779 GGAGTAACAAAACGCCGTAGGAGAAGAAAGAAATCAGAGATTAAAAGACGTGATCCTAAT 838
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct 819 GGAGTAACAAAACGCCGTAGGAGAAGAAAGAAATCAGAGATCAAAAGACGTGATCCTGAT 878
Query 839 CATCCAAAACCCAACAGAAGTGGTTATAACTTCTTTTTCGCAGAGCAGCACGCGAGGCTG 898
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 879 CATCCAAAACCCAACAGAAGTGGTTATAACTTCTTTTTCGCAGAGCAGCACGCGAGACTT 938
Query 899 AAACCGCTTCATCCTGGTAAGGATAGGGATATCAGCAGGATAATTGGTGAGCTATGGAAC 958
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 939 AAACCGCTTCATCCTGGTAAGGATAGGGATATCAGCAGGATGATTGGTGAGCTATGGAAC 998
Query 959 AAGCTGAATGAAGATGAAAAATTGGTTTACCAAGGGAAGGCAATAGAGGACAAAGAGCGA 1018
|||||||||||||| ||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct 999 AAGCTGAATGAAGACGAAAAATTGATTTACCAAGGGAAGGCAATGGAGGACAAAGAGCGA 1058
Query 1019 TACAGAACTGAAATGGAAGATTACAGAGAGAAGCAAAGGACTGGACAGCTCATAAGCAAC 1078
|||||||||||||||||||||||||||||||| ||| || |||||||||||||||||||
Sbjct 1059 TACAGAACTGAAATGGAAGATTACAGAGAGAAAAAAAAGAATGGACAGCTCATAAGCAAC 1118
Query 1079 GCTGTTCCGCTGCAACAGAGACTTCCGGAGCAAAACGTAGACATGGCTGAAGCTGATCTT 1138
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1119 GCTGTTCCGCTGCAACAGAGACTTCCGGAGCAAAACGTAGACATGGCTGAAGCTGACCTT 1178
Query 1139 CCAATAGACGAAGTCGAAGAAGATGAGGAAGAAGGTGATTCAAGTGGTTCCTCAGGCGAA 1198
||||| || ||||||||||||||||| ||||||||||||||||| || ||||||||||||
Sbjct 1179 CCAATTGATGAAGTCGAAGAAGATGACGAAGAAGGTGATTCAAGCGGATCCTCAGGCGAA 1238
Query 1199 AGCGAGCCACGTGATGATCAGAGCATAGAAACTGATCCTGAATTGGAAGAGCCATCTCCG 1258
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1239 AGCGAGCCACATGATGATCAGAGCATAGAAACTGATCCTGAATTGGAAGAGCCATCTCTG 1298
Query 1259 AATCCCTCAGGTCCAAACCTAAACCCTAATCCGACTGAGATAGTGATGGCTCCTAAGGAT 1318
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1299 AATCCCTCAGGTCCAAACCTAAACCCTAATCCGACTGAGATAGTGGTGGCTCCTAAGGAG 1358
Query 1319 AATAACGGCGATGTTGTGATGGAAACATCTCCACTGAAGAAAGCCGATGAGCCGACTGTG 1378
|| |||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct 1359 AAAAACGGCGATGTTGTGATGGAAACATCTCCATTGAAGAAAGCCGATGAGCCAACTGTG 1418
Query 1379 GCGGTGACTGCTGAGCAGAACTGAAGATTCTTCTCTTATTTCTTATTCGA-GTTGCCAGT 1437
||||||||||||||||||||||||||||||||||||| ||||||| || |||||||||
Sbjct 1419 GCGGTGACTGCTGAGCAGAACTGAAGATTCTTCTCTTGTTTCTTACTCCCCGTTGCCAGT 1478
Query 1438 TTTCGTGTTCCATAGGTAAAGGTTAGAGAGAGGATAGGGCTTCAGATACCTTACTTTTGG 1497
|| ||||||||||||||||| ||||||||||||| ||||||||||||||||| ||| |||
Sbjct 1479 TT-CGTGTTCCATAGGTAAATGTTAGAGAGAGGAAAGGGCTTCAGATACCTTGCTTCTGG 1537
Query 1498 CACAAGATTATGCCTTTTTGGT 1519
| |||||||||| |||||||||
Sbjct 1538 CCCAAGATTATGTCTTTTTGGT 1559
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74949413685
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5