BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470474
Length=1829
Score E
Sequences producing significant alignments: (Bits) Value
AT1G04890.1 | Symbols: | Protein of unknown function, DUF593 |... 2340 0.0
> AT1G04890.1 | Symbols: | Protein of unknown function, DUF593
| chr1:1380382-1382599 REVERSE LENGTH=2023
Length=2023
Score = 2340 bits (1267), Expect = 0.0
Identities = 1695/1887 (90%), Gaps = 87/1887 (5%)
Strand=Plus/Plus
Query 1 CAAGAGAAGAACCAAATGTGATTAACAACAAGGAACTTGGTAGATTTGATCTGATGACCG 60
||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 1 CAAGAGACGAACCAAATGTGATTAACAATAAGGAACTTGGTAGATTTGATCTTATGACCG 60
Query 61 TTCAGGGCATGAAAGGCAAACGTTTTGTTACACGAAGATCAAGAAACGGTCTTAAAAACC 120
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 61 TTCAGGGCATGAAAGGCAAACGTTTTGTTACAAGAAGATCAAGAAACGGTCTTAAAAACC 120
Query 121 ATAGGAG---AGGTCGTGTAAATTGTGCAAGTCTTAGATCGATTTCTTCATCAGAAGCCT 177
||||||| |||||||||||| ||||||||||| ||||| |||||||||||||||||||
Sbjct 121 ATAGGAGATCAGGTCGTGTAAACTGTGCAAGTCTCAGATCTATTTCTTCATCAGAAGCCT 180
Query 178 TTGATGAGACCGCAAAAACCCATTTGATGCAGCCTTATGATGAGACATGTTCCAATGATG 237
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 181 TTGATGAGACCGCAAAAACCAATTTGATGCAGCCTTATGATGAGACATGTTCCAATGATG 240
Query 238 ACCAAAAAGATTGT-GTAAAGGCAGGAGAGGGGACTAATCTATCTCTTTGGCCGGAATTT 296
|||||||||||||| || |||||||||||||||||||||||||||| |||||||||||||
Sbjct 241 ACCAAAAAGATTGTGGT-AAGGCAGGAGAGGGGACTAATCTATCTCATTGGCCGGAATTT 299
Query 297 GAGAAAACTGTATCAGTTAATGAACAGGTAAAGTCCAATTCATCAGCAGATCAGTCTTTT 356
|||||||| |||||||||||| |||||||||| ||||||||||||||||| || ||||||
Sbjct 300 GAGAAAACCGTATCAGTTAATCAACAGGTAAACTCCAATTCATCAGCAGAACAATCTTTT 359
Query 357 GTCAGAAATGCAGAGGAAAA-CTCTGTTAGGGATTTAGAAGAATTATTGAAAGAAGAGCG 415
|| ||||||| ||| ||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 360 GTGAGAAATGTAGA-GAAAAGATCTGTTAGGGATTTAGAAGAATTATTGAAAGAAGAGAG 418
Query 416 AGCTGCTCGAGCAGCGGTTTGCGTTGAGCTTGACAAAGAGAGAAACGCTGCAGCATCCGC 475
||| ||||||||| ||||||| || ||||||||||||||||||| |||||||||||| ||
Sbjct 419 AGCGGCTCGAGCAACGGTTTGTGTCGAGCTTGACAAAGAGAGAAGCGCTGCAGCATCAGC 478
Query 476 AGCGGATGAAGCAATGGCGATGATACATAGGCTGCAAGATGAGAAGGCGGCTATTGAAAT 535
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 479 AGCGGATGAAGCGATGGCGATGATACATAGGCTGCAAGATGAGAAGGCGGCAATTGAAAT 538
Query 536 GGAAGCGAGGCAATTCCAGAGAATGGTTGAAGAGAAATCGACTTTTGATGCTGAAGAGAT 595
|||||||||||| ||||||||| |||||||||||| ||||||||||||||||||||||||
Sbjct 539 GGAAGCGAGGCAGTTCCAGAGACTGGTTGAAGAGAGATCGACTTTTGATGCTGAAGAGAT 598
Query 596 GGTCATACTCAAAGACATTTTGATACGGCGTGAGAGGGAAAAACATTTCTTGGAGAAAGA 655
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 599 GGTCATACTCAAAGACATTTTGATACGGCGTGAGAGAGAAAAACATTTCTTGGAGAAAGA 658
Query 656 AGTTGAAGCTTATAGACAACTACTCGAGGAAACAGAGGAATTGGAATGTTCTTTAACAAA 715
||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct 659 AGTTGAAGCTTATAGACAACTACTCGAAGAAACAGAGGAATTGGAATGTTCTTTAATAAA 718
Query 716 AGAGAAGAATGTTCCAGAACCGGAACACAAACAAAATC-AAGATTCTCAAGAGAGAAGAG 774
|||||||||||||||||||||||||||||||||||| | |||| | ||||||||||||||
Sbjct 719 AGAGAAGAATGTTCCAGAACCGGAACACAAACAAAA-CAAAGACTGTCAAGAGAGAAGAG 777
Query 775 CTTTGCTCGTTCAAGAACTTGATGGAACGGTTCTTGATATGCCTTATAGAGAAGAAGAAA 834
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct 778 CTTTGCTCGTTCAGGAACTTGATGGAACGGTTCTCGATATGCCTTATAGAGAAGAAGGAA 837
Query 835 ACAGAGATAAAAGCAGAGATCTGTATAAATCAGATTCAGAAGTCGCTTATTCACGCGTAC 894
|||||||||||| ||||||||||||||||||||||||||||||||| || ||||| || |
Sbjct 838 ACAGAGATAAAAACAGAGATCTGTATAAATCAGATTCAGAAGTCGCGTACTCACGTGTGC 897
Query 895 GTGATGTTTATATGGTGAAGGATGAAACAGATAACATTAGTAAGAAGAAGAACCTAGAAG 954
|||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||
Sbjct 898 GTGATGTTTATATGGTGAAGGACGAAACAGAGAACATTAGTAAGAAGAAGAATCTAGAAG 957
Query 955 AATCCTCTGTTAGCAAACCTAAAGAATCGTTGGAGGAAAATAGTATCATTGTCTCGGGGA 1014
||||||||||| |||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 958 AATCCTCTGTTGGCAAACCTAAAGAATCGTTGGATGAAAACAGTATCATTGTCTCGGGGA 1017
Query 1015 TTGCTCGAAAGCTTCCTCCATTATGTCGTCCACGCAAGAAGTCTCTGAGCTCTTCAGGTT 1074
||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||| ||||
Sbjct 1018 TTGCTCGAAAGCTACCTCCCTTATGTCGTCCACGCAAGAAGTCGCTGAGCTCTTCGGGTT 1077
Query 1075 CAAGGAGAAAATCAATGTCTGCGGTTGATTATGAGAGGTTAAAGATTGAGAATGAAGTGG 1134
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1078 CAAGGAGAAAATCGATGTCTGCGGTTGATTATGAGAGGTTAAAGATTGAAAATGAAGTGG 1137
Query 1135 AATTGTTAAGAGAAAGATTAAAGGCTGTTCAAGAGGAAAGAGAGGAGCTTACGAGACGAG 1194
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1138 AATTGTTAAGAGAAAGATTAAAGGCTGTTCAAGAGGAAAGAGAGGAGCTTACGAGACGAG 1197
Query 1195 CATCTTTGCCTCCTTTACCATCAAAGGTTAGGGCTACGTCAGAGAGGCGAAGTTGGAGAA 1254
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 1198 CATCTTTGCCTCCTTTACCATCAAAGGTTAGGGCTACGTCAGAGAAGCGAAGTTGGACAA 1257
Query 1255 GATCTTCTTCCATGGACCTTCACTCTTC-------CTGAAGCCTTTTTAATTTTATGCAC 1307
|||||| ||||||||| ||||||||||| |||||||||||| ||||||||| ||
Sbjct 1258 GATCTTGTTCCATGGATCTTCACTCTTCTTGAAGGCTGAAGCCTTTTAAATTTTATGTAC 1317
Query 1308 GTAGATACATACATGTT-GT--GTAT-GTATA--GGATAC-AGTATC-----CG-GTT-A 1353
|||| ||||||||||| || |||| ||||| |||| | | |||| || ||| |
Sbjct 1318 TTAGACACATACATGTTTGTATGTATAGTATACAGGATTCGATTATCAGTTACGTGTTTA 1377
Query 1354 C---TTTCGAGCCATCCCTGTAGAGAA-TGCTTGGATCGCAAGTCAACCCTTTGGGA-TG 1408
| ||| |||||||| || | ||||| | |||||||||||||||| |||||||||| ||
Sbjct 1378 CAGATTTTGAGCCATCTCTATGGAGAAAT-CTTGGATCGCAAGTCA-CCCTTTGGGAATG 1435
Query 1409 TATTTCTCT-T-GTTTTTCAAATGTTTGCTTGCTTTTTGTTCGTTTATATCGACAATAAT 1466
||||| ||| | || ||| | | |||||||||||||||||| |||||||||||||
Sbjct 1436 TATTTTTCTATCGTCGATCATACATA--CTTGCTTTTTGTTCGTTTGTATCGACAATAAT 1493
Query 1467 TATTCGACTTAGTGAATCAAATAT-TAATTACTGCAATAAAATTTGAAGAAAACT-ATTT 1524
|||||||| |||||| |||||||| || |||||||||||||| ||||||| |||| ||||
Sbjct 1494 TATTCGACATAGTGATTCAAATATATA-TTACTGCAATAAAAGTTGAAGATAACTTATTT 1552
Query 1525 ACATGTCTTCTTTTCAAATTAAATCTAATTAAGCTACATTGAAAAAGTCATGCAACAACA 1584
||||||| |||| |||||| |||| | ||||||||||||||||||||||||||
Sbjct 1553 ACATGTCCTCTTATCAAAT-----CTAAG-A---TACATTGAAAAAGTCATGCAACAACA 1603
Query 1585 TCCAAATAAAACGATTGAAAGATATTTTGTGAATATCTTGTTGATGAAAATAGATTAGTG 1644
|||| ||| |||||||| |||||||||| || | | | |||||||||||||||||| |
Sbjct 1604 TCCATATATAACGATTGGAAGATATTTT-TG--TGT-T-GTTGATGAAAATAGATTA-TA 1657
Query 1645 TAATATCTTTGTTAATTTTAGTGTAATATCACAT-GTCTAACAATATTTTAACCTCt-tt 1702
|| || | ||| |||||||||||||||||| | ||||||||||| |||||||||| ||
Sbjct 1658 TA-TAA-T--GTTCATTTTAGTGTAATATCACTTTGTCTAACAATAATTTAACCTCTCTT 1713
Query 1703 tttttaaaaaaaTGAAGCTTGTCAATTGACCGATATAAAATATAACCGTTAT---A--AT 1757
||||| ||| ||||||| |||| |||| ||||||||||||||||||||| | ||
Sbjct 1714 TTTTTTTAAAC--GAAGCTTTTCAACTGACTGATATAAAATATAACCGTTATTGTAGTAT 1771
Query 1758 GG-A-TTG---AATT--TTA--TTTTG----AA-TGTATGTAAGTGGTGAAAATGTATGT 1803
| ||| ||| ||| ||||| || |||||||||| ||||| |||||||||
Sbjct 1772 ATCAGTTGTTCAATGGATTAAATTTTGTTCTAAATGTATGTAAGCGGTGATAATGTATGT 1831
Query 1804 AAAA-TATATTTTACAGATTGTTGAGA 1829
|||| | ||||||||||||||||||||
Sbjct 1832 AAAAATGTATTTTACAGATTGTTGAGA 1858
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90511582635
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5