BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470475
Length=1586
Score E
Sequences producing significant alignments: (Bits) Value
AT1G04900.1 | Symbols: | Protein of unknown function (DUF185) ... 2276 0.0
> AT1G04900.1 | Symbols: | Protein of unknown function (DUF185)
| chr1:1383841-1387895 FORWARD LENGTH=1734
Length=1734
Score = 2276 bits (1232), Expect = 0.0
Identities = 1374/1439 (95%), Gaps = 23/1439 (2%)
Strand=Plus/Plus
Query 56 GAAATGTTGATCAATTCGAGCTGCCATCTCTTGGATCGCTTCGAGCTTTCTTCTCTACTC 115
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 112 GAAATGTTGATCAATTCGAGCTGCCATGTCTTGGATCGCTTCGAGCTTTCTTCTCTACTC 171
Query 116 AGAAGCTCATAGGCGATGAACCAGTTCTCGTTCGAGATTTCATACACACAGCATTATATG 175
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 172 AGAAGCTCATAGGGGATGAACCAGTTCTCGTTCGAGATTTCATACACACTGCATTATATG 231
Query 176 ATCCCCAA-A-AAGGCTACTTCTCTCAACGATCCAAATCTGTCGGGGTTTTGGAGAGAAG 233
|| |||| | ||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 232 AT--CCAATACAAGGCTACTTCTCTCAACGGTCAAAATCTGTCGGGGTTTTGGAGAGAAG 289
Query 234 CATTAAGTTCAACCAGCTTGAAGGGAGGAAAGCATACATGAAACTCTTGGAAAAAGTATA 293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 290 CATTAAGTTCAACCAGCTTGAAGGGAGGAAAGCATACATGAAACTCTTGGAAAAAGTATA 349
Query 294 CAAGCAGAGTGACATTTCTTGGTTTACTCCTGTGGAGCTGTTCAAGCCTTGGTATGCTCA 353
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 350 CAAGCAGAGTGACATTTCTTGGTTTACTCCAGTGGAGCTTTTCAAGCCTTGGTATGCTCA 409
Query 354 TGGGATTGCAGAAGCTATACTGCGTACCACAAATCTCTCAGTTCCATTAAAGATATACGA 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 410 TGGGATTGCAGAAGCTATACTGCGTACCACAAATCTCTCAGTTCCATTAAAGATATACGA 469
Query 414 AATTGGTGGTGGATCGGGCACATGTGCGAAGGGTGTATTGGACTATATAATGTTGAATGC 473
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 470 AATTGGTGGTGGATCGGGCACATGTGCCAAGGGTGTATTGGACTATATAATGTTGAATGC 529
Query 474 TCCGGAGAGAATCTACAATAACATGAGCTACACTTCTATAGAAATCAGTCCTTCACTGGC 533
|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||
Sbjct 530 TCCGGAGAGAATCTACAAGAACATGAGCTACACTTCTATAGAAATCAGTCCCTCACTTGC 589
Query 534 TAAGATTCAAAAGGAAACTGTTGCACAAGTTGGAAGTCATCTATCAAAGTTCCGAGTTGA 593
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 590 TAAGATTCAGAAGGAAACTGTTGCACAAGTTGGAAGTCATCTATCAAAGTTCCGAGTTGA 649
Query 594 GTGTCGTGATGCATCTGACCTATCTGGATGGAAGAATATGGAGCAACAACCGTGCTGGGT 653
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 650 GTGTCGTGATGCATCTGACCTAGCTGGATGGAAGAATGTGGAGCAACAACCGTGCTGGGT 709
Query 654 GATAATGCTTGAGGTGCTAGATAATCTCCCTCATGATCTTGTCTATTCCAAAAGTCAAGT 713
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct 710 GATAATGCTTGAGGTGCTAGATAATCTCCCACATGATCTTGTCTATTCCAAAAGTCAACT 769
Query 714 CTCCCCATGGATGGAAGTCTTGGTTGAAAATAAACCAGAGAGCGAAGCACTCTCTGAGCT 773
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 770 TTCCCCATGGATGGAAGTCTTGGTTGAAAATAAACCAGAGAGCGAAGCACTCTCTGAGCT 829
Query 774 ATACAAGCCTTTAGAAGATCCACTGATCAAGCGCTGCATTGAAATTGTTGAACATGAAGA 833
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 830 ATACAAGCCTTTAGAAGATCCACTGATTAAGCGGTGCATTGAAATTGTTGAACATGAAGA 889
Query 834 TGATCCGGTTTCAAAACCAAAAGAAATCTGGTCTAAACTATTTCCCAAACCTAGACGTAG 893
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 890 TGATCCGGTTTCAAAACCAAAAGAAATTTGGTCTAAACTATTTCCCAAACCTAGACGTAG 949
Query 894 TTGGCTTCCGACAGGTTGTTTGAAACTGCTAGAGGTTTTACATGCAAAGCTGCCAAAGAT 953
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 950 TTGGCTTCCAACAGGTTGTTTGAAACTGCTAGAGGTTTTACATGCAAAGCTGCCAAAGAT 1009
Query 954 GTCCCTAATTGCTTCGGACTTTAGCTTCTTGCCCGACGTGAAAGTTCCGGGTGAAAGAGC 1013
||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||
Sbjct 1010 GTCCCTAATTGCTTCGGACTTTAGCTTCTTGCCTGATGTGAAAGTTCCTGGTGAAAGAGC 1069
Query 1014 CCCATTGGTTTCAACAAAGAAAGATGGATGTAGCTCAGATTACAGTAGTTATCTGGACGC 1073
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1070 CCCATTGGTTTCAACAAAGAAAGATGGATGTAGCTCAGATTACAGTAGTTATCTGGACGC 1129
Query 1074 AAAGGGTGATGCTGATATATTTTTTCCAACCGATTTCTGGCTTTTAGAACGAATGGACCA 1133
|||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct 1130 AAAGGGTGATGCTGATATATTTTTCCCAACCGATTTCTGGCTTCTAGAACGAATGGACCA 1189
Query 1134 TTACTGTTCCGGTTGGAGGAAGATGGAAAAAGACGGGACACCATCGAAGAAAGGAAGGAA 1193
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1190 TTATTGTTCCGGTTGGAGGAAGATGGAAAAAGACGGGACACCATCGAAAAAAGGAAGGAA 1249
Query 1194 AAGGCGAACTCTCACTCTCGATACATCAGCATTCATGGATGAGTTTGGTTTACCTTCAAA 1253
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 1250 AAGGCGAACTCTCACTCTTGATACATCAGCGTTCATGGATGAGTTTGGTTTACCTTCAAA 1309
Query 1254 GACGAGAACAAAGGACGGATATAACCCTTTACTTGATGACTTCAAGAACACCAAGTTCTA 1313
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 1310 GACGAGAACAAAGGACGGATATAACCCCTTACTTGATGACTTCAAGAACACTAAGTTCTA 1369
Query 1314 TCTTAGTGTCCCAACCCACAACACTAAGTAGTAAGCAAAAGAT-TCATC---TCATGGAT 1369
||||||||||||||| |||||||||||||||||||||| |||| || || ||||||||
Sbjct 1370 TCTTAGTGTCCCAACACACAACACTAAGTAGTAAGCAACAGATATCTTCAGCTCATGGAT 1429
Query 1370 GTCTGAAATTTGCAGAGAAATGAAAGG----GTTTAGAGCTCTGATTATTTCTTTTGTTT 1425
||| ||| |||||||||||||||||| |||||||||||||| |||| |||| |
Sbjct 1430 GTCGGAATTTTGCAGAGAAATGAAAGAAAAAGTTTAGAGCTCTGA--ATTT-TTTT-T-- 1483
Query 1426 TTCAAATGCTTTAATAAGTT-TAATCAATTATTCCATCGCTATAGACATTGAAGATAGG 1483
| ||| ||||||||||| |||||||| |||||||||||| ||||| ||||||||||
Sbjct 1484 ---AGATGATTTAATAAGTTATAATCAAT-ATTCCATCGCTACAGACACTGAAGATAGG 1538
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78312850200
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5