BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470476
Length=1898
Score E
Sequences producing significant alignments: (Bits) Value
AT1G04910.1 | Symbols: | O-fucosyltransferase family protein |... 3125 0.0
> AT1G04910.1 | Symbols: | O-fucosyltransferase family protein
| chr1:1387871-1391187 REVERSE LENGTH=1903
Length=1903
Score = 3125 bits (1692), Expect = 0.0
Identities = 1833/1901 (96%), Gaps = 9/1901 (0%)
Strand=Plus/Plus
Query 1 AAATCTACATCTCGCCAGTGAGAAAGACTCTCCAAGGAGAGAGTTTGTTTACACAGAGAA 60
||||||||||||||||||||||||||| |||||||||||||| | | | |||||| |
Sbjct 2 AAATCTACATCTCGCCAGTGAGAAAGA--CTCCAAGGAGAGAG--AGCTCATACAGAGTA 57
Query 61 TTACAAATTCTAAAATCACTGGAGAATATCTCGTCTTCTTCCTTG-TTTCAAACGCGATG 119
||| ||||||| |||||||| ||||| ||||||||||||||| || ||| ||||||||||
Sbjct 58 TTAGAAATTCTCAAATCACTAGAGAAGATCTCGTCTTCTTCC-TGATTTTAAACGCGATG 116
Query 120 CGAAGGTTAGGGCACCACCGACTTCATGGGAAGACGGGAGGAGTTGGAACAAAGGGGATG 179
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 117 CGAAGGTTAGGTCACCACCGACTTCATGGGAAGACGGGAGGAGTTGGAACAAAGGGGATG 176
Query 180 GTGGCGAAACTTTCTATCGGAGTCATTGTTCTACTGATCTGTACGCTCTCGCTACTTTTC 239
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 177 GTGGCGAAACTGTCTATCGGAGTCATTGTTCTACTGATCTGTACGCTCTCGCTGCTTTTC 236
Query 240 TCGGCTAACATCGGTAGCAATCGCGAGCCGACCCGTCCATCTAAGATAAACGTGGAAGAG 299
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 237 TCGGCTAACATCGGTAGCAATCGCGAACCGACCCGTCCATCTAAGATAAACGTGGAAGAG 296
Query 300 CTCTGGCAGAGTGCTGAATCTGGTGGTTGGAGACCGTCTTCTGCACCACGATCTGACTGG 359
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 CTCTGGGAGAGTGCTAAATCTGGTGGTTGGAGACCGTCTTCTGCACCACGATCTGACTGG 356
Query 360 CCTCCTCCTACCAAGGAGACAAATGGTTATCTCCGTGTTCGATGTAATGGTGGTTTGAAT 419
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 CCTCCTCCTACGAAGGAGACAAATGGTTATCTCCGTGTTCGATGTAATGGTGGTTTGAAT 416
Query 420 CAGCAACGTAGTGCGATATGTAATGCAGTACTTGCTGCCCGGATCATGAATGCTACACTT 479
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 417 CAGCAACGTAGTGCGATATGTAATGCAGTACTTGCTGCGCGGATCATGAATGCTACACTT 476
Query 480 GTGTTACCCGAATTAGATGCAAACTCGTTTTGGCATGATGACAGTGGTTTTCAAGGTATC 539
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 GTGTTGCCCGAATTAGATGCAAACTCGTTTTGGCATGATGACAGTGGTTTTCAAGGTATC 536
Query 540 TATGACGTGGAACATTTTATTGAGACACTGAAGTATGATGTTAAGATTGTGGGAAAGATC 599
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 TATGACGTTGAACATTTTATTGAGACACTGAAGTATGATGTTAAGATTGTGGGAAAGATC 596
Query 600 CCCGATGTTCACAAAAATGGGAAAACCAAGAAGATAAAAGCTTTTCAGATTCGCCCTCCT 659
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 597 CCCGATGTTCACAAAAATGGGAAAACCAAGAAGATAAAAGCTTTTCAGATTCGTCCTCCT 656
Query 660 CGAGATGCTCCTATTGAGTGGTACCTGACAACTGCTCTAAAGGCAATGAGGGAACATAGT 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 CGAGATGCTCCTATTGAGTGGTACCTGACAACTGCTCTAAAGGCAATGAGGGAACATAGT 716
Query 720 GCTATCTATCTTACCCCTTTTTCACATCGTTTGGCGGAGGAAATTGACAATCCTGAATAT 779
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 717 GCTATCTATCTTACCCCTTTTTCACATCGTTTAGCGGAGGAAATTGACAATCCTGAATAT 776
Query 780 CAAAGGTTAAGGTGCAGAGTGAACTACCATGCTTTGAGATTCAAGCCACACATCATGCAG 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 777 CAAAGGTTAAGGTGCAGAGTGAACTACCATGCTTTGAGATTCAAGCCACACATCATGAAG 836
Query 840 TTGAGTGAATCTATTGTTGATAAACTCCGGTCACAGGGCCACTTCATGTCGATCCATCTT 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 TTGAGTGAATCTATTGTTGATAAACTCCGGTCACAGGGCCACTTCATGTCGATCCATCTT 896
Query 900 CGTTTTGAAATGGATATGTTGGCATTTGCCGGGTGCTTTGACATATTTAACCCTGAGGAA 959
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 897 CGTTTTGAAATGGATATGTTGGCATTTGCGGGGTGCTTTGACATATTTAACCCTGAGGAA 956
Query 960 CAGAAGATACTTAGGAAGTACCGTAAAGAAAATTTTGCAGAGAAAAGGCTTATTTACAAC 1019
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 957 CAGAAGATACTTAGGAAGTACCGTAAAGAAAATTTTGCAGATAAAAGGCTTATTTACAAC 1016
Query 1020 GAAAGACGGGCTATCGGAAAGTGTCCACTGACCCCTGAGGAGGTAGGTCTTATATTACGA 1079
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1017 GAAAGACGGGCTATCGGGAAGTGTCCACTGACCCCTGAGGAGGTAGGTCTTATATTACGA 1076
Query 1080 GCAATGAGATTCGACAACTCCACAAGGATATACTTAGCAGCTGGTGAACTTTTTGGCGGG 1139
|||||||||||||||||||| |||||||||||| ||||||| ||||||||||||||||||
Sbjct 1077 GCAATGAGATTCGACAACTCAACAAGGATATACCTAGCAGCCGGTGAACTTTTTGGCGGG 1136
Query 1140 GAACGGTTCATGAAACCGTTTCGAACCTTGTTTCCACAGCTTGACAACCATAGCTCGGTA 1199
|||| ||||||||||||||||||||| || || |||| |||||| |||||||||||||||
Sbjct 1137 GAACAGTTCATGAAACCGTTTCGAACATTATTCCCACGGCTTGATAACCATAGCTCGGTA 1196
Query 1200 GACCCCTCTGAGGAGCTGTCAGCAAAGTCACAGGGATTAATAGGATCAGCTGTGGATTAC 1259
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1197 GACCCCTCTGAGGAGCTGTCAGCAACCTCACAGGGATTAATAGGATCAGCTGTGGATTAC 1256
Query 1260 ATGGTTTGTCTCCTCTCCGACATTTTTATGCCAACATATGATGGACCAAGCAATTTCGCC 1319
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1257 ATGGTTTGTCTTCTCTCCGACATTTTTATGCCAACATATGATGGACCGAGCAATTTCGCC 1316
Query 1320 AACAATCTTTTGGGTCATCGCCTTTACTATGGTTTCCGTACCACAATCAGACCAGACAGA 1379
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1317 AACAATCTCTTAGGTCATCGCCTTTACTATGGTTTCCGTACCACAATCAGACCAGACAGA 1376
Query 1380 AAAGCATTAGCTCCAATTTTCATAGCTAGAGAGAAGGGGAAAACGGCTGGATTTGAAGAA 1439
||||||||||||||||||||||||||||||||||||||||||| |||||| || |||||
Sbjct 1377 AAAGCATTAGCTCCAATTTTCATAGCTAGAGAGAAGGGGAAAAGGGCTGGCTTCGAAGAG 1436
Query 1440 GCAGTGAGACGAGTAATGCTGAAAACAAACTTTGGAGGGCCTCACAAACGTGTATCTCCT 1499
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 1437 GCAGTGAGACGAGTAATGCTGAAAACAAACTTCGGAGGGCCTCACAAGCGTGTATCTCCT 1496
Query 1500 GAATCATTTTATACAAATTCATGGCCTGAATGTTTCTGTCAGATGAATCCGAAGAAATCT 1559
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1497 GAATCGTTTTATACAAATTCATGGCCTGAATGTTTCTGTCAGATGAATCCGAAGAAGTCT 1556
Query 1560 AGTGATAAATGCCCGCCAAATAATGTTATAGAGATTCTTGACAGCCGGTTAGAGAGTGTC 1619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1557 AGTGATAAATGCCCGCCAAATAATGTTATAGAGATTCTTGACAGCCGGTTAGAGAGTATC 1616
Query 1620 AGAGATCCAGATTCAACTTCTCAGACGAATTCCACGGTCACTGGATTAGAACGGTAAGGA 1679
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1617 AGAGATCCAGATTCAACTTCTCAGACGAATTCCACGGTCACTGGATTAGAACGGTAAGGA 1676
Query 1680 TCTTAACTGGTAAGCCTTTGGAACGTTTTATACC-AAAACTTGTTTCAAACAAAGAAGAG 1738
|||||||||||||||||||||||||||||||||| |||| | ||||||||||||||||||
Sbjct 1677 TCTTAACTGGTAAGCCTTTGGAACGTTTTATACCTAAAAGT-GTTTCAAACAAAGAAGAG 1735
Query 1739 CAGAAGAAGAGAGATGTTTCTCGAC-ATTGTTCATACAGTTCAGGTAGCTCAACATCTCT 1797
||||||||||||||||| |||| || |||||||||||| ||||||||||||||| |||||
Sbjct 1736 CAGAAGAAGAGAGATGTGTCTCCACCATTGTTCATACAATTCAGGTAGCTCAACGTCTCT 1795
Query 1798 GTGTCAAACTTTTTTCTTTATGAAGCATAGATTTGAATCTTGTTTCAAAATTTGTAACAA 1857
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1796 GTGTCAAACAATTTTCTTTATGAAGCATAGATTTGAATCTTGTTTCAAAATTTGTAACAA 1855
Query 1858 AATCTACGAGAAGTGATGAGATTCCACTAATAGTTATTTTA 1898
|||||| |||||||||||||||||||||||||||| |||||
Sbjct 1856 AATCTAAGAGAAGTGATGAGATTCCACTAATAGTTGTTTTA 1896
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93975420240
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5