BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470480
Length=1583
Score E
Sequences producing significant alignments: (Bits) Value
AT1G04945.3 | Symbols: | HIT-type Zinc finger family protein |... 2296 0.0
> AT1G04945.3 | Symbols: | HIT-type Zinc finger family protein
| chr1:1399174-1403038 FORWARD LENGTH=2532
Length=2532
Score = 2296 bits (1243), Expect = 0.0
Identities = 1471/1578 (93%), Gaps = 27/1578 (2%)
Strand=Plus/Plus
Query 12 ATTCGGTCTGCGAAGAGTGCAAGCTAAATCCATGGAAGTACAAATGTCCTGGATGTTCGA 71
|||||||||||||||||||||| | |||||||||||||||||||||||| |||||||| |
Sbjct 974 ATTCGGTCTGCGAAGAGTGCAAACAAAATCCATGGAAGTACAAATGTCCCGGATGTTCAA 1033
Query 72 TTCGATCGTGTGGTCTTCCTTGTGTGAAAGCCCACAAGCAGCGAACAGGCTGTACCGGAA 131
|||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 1034 TTCGATCGTGTGCCCTTCCCTGTGTGAAAGCCCACAAGCAGCGAACAGGTTGTACCGGAA 1093
Query 132 AAAAGAAGCTCACCAACGTCGTTCCCCTCTCCAAGTTCGACGATAATCTCCTCCTTTCTG 191
||| |||| ||||| |||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 1094 AAAGGAAGTTCACCGACGTCGTTCCCCTCTCCAAGTTCGACGACAATCTCCTCCTCTCTG 1153
Query 192 ACTACATTATGCTTGAGGAAACAAAAAGAGTGGCGGAGTCTGCTCTGAGAACGAGGAA-T 250
|||||| |||||||||||||||||||||||| || |||||||||||||||| || ||| |
Sbjct 1154 ACTACAATATGCTTGAGGAAACAAAAAGAGTAGCCGAGTCTGCTCTGAGAAGGA-GAAGT 1212
Query 251 CAATTATGCAAAAATCATCATTCTTATAAGTTACCCTATCTTCTTCGGAGCCTTCAAAGT 310
|||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 1213 CAATTATGCAAAAATCATTATTCTTATAAGTTACCCTATCTTCTTAAGAGCCTTCAAAGT 1272
Query 311 GCTGCTTATAGCCGCAGAACCAAGCTATTGTATCTCCCTAGTGGAATGTTAAAGAGGGAA 370
|||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct 1273 GCTGCTTATAGCCGCAGAACTAAGCTATGGTATCTCCCTAGTGGAATGTTAAAGAGGGAA 1332
Query 371 AACAATCAGTCAAGATACGATAATAGGAGCAAGTGCATCTCGTGGACAATTGAGTGGCGG 430
|| |||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 1333 AATAATCAGTCCAGATACGATAATAGGAGCAAGTGTATCTCGTGGACAATAGAGTGGCGG 1392
Query 431 TTTCACTCTACAGATGTGATTCTTGTTGATCATGGAGTTGGTGAAGATACAAATCTATGC 490
||||||||||||||||| ||||||||||| ||||||||||||||||||| ||| ||||||
Sbjct 1393 TTTCACTCTACAGATGTCATTCTTGTTGACCATGGAGTTGGTGAAGATAGAAACCTATGC 1452
Query 491 TCAGTGATAAAGAATCATCTCAAGCCTGGCCCCTGGATTCACAAGCTCAAGCCTTTTTGT 550
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1453 TCAGTGATAAAGAATCATCTCAAGCCTGGCCCCTGGATTCACAAGCTCAAGCCTTTTTGT 1512
Query 551 GATGTGGATCTTGATTCTCTTAAACTTTTTATACGCCAATACCCAAAGGGTGCAAAGGCT 610
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1513 GATGTGGATCTTGATTCTCTCAAACTTTTTATACGCCAATACCCAAAGGGTGCAAAGGCT 1572
Query 611 CCTTTCAAGGAGCTGGACATCAAAGCTCCTTTGAGGCAACAGCTTGCCAAAGTAGCTATC 670
|||||||||||||||||||||||||||||||||||| |||||||||||||||| | |||
Sbjct 1573 CCTTTCAAGGAGCTGGACATCAAAGCTCCTTTGAGGAAACAGCTTGCCAAAGTTGTTATA 1632
Query 671 TTAGAGTACCCGGTGATCCATGTATATCTACCTTCACAGAGCTAT-AACTTTGAAGTTAT 729
||||||||||||||||||||||||||||||||||||||||||||| || ||| |||||||
Sbjct 1633 TTAGAGTACCCGGTGATCCATGTATATCTACCTTCACAGAGCTATGAA-TTTAAAGTTAT 1691
Query 730 CAACCA-TGTAAACACGACACCTAATCCTAATGATTCCTTATATGATGGTTATGGATGCA 788
||| | | | |||||||||||||||||||||||||| ||||| |||||| |||||||||
Sbjct 1692 CAAAGACT-TTAACACGACACCTAATCCTAATGATTCGTTATACGATGGTCATGGATGCA 1750
Query 789 CTAATGGTACAACCTTCCGAGAAGAAGAAATAGAAGAAGACGACATCAACTCCTTTGAGC 848
| ||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1751 CAAATGGTATAACCTTCCGAGAAGAAGAAATAGAAGAAGACGACATTGACTCCTTTGAGC 1810
Query 849 CAAAGGTTCTTGAG-CTTATGAAACAAATGAACTATAACCCGTGTCTGCGAGTCTCAGAG 907
|| ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1811 CAGAGGTTCTTG-GTCTTATGAAACAAATGAACTATAACCCGTGTCTGCGAGTCTCAGAG 1869
Query 908 GAAAGCAAGGCAGAGGGCGTTGGTACCAACAAGTCAAATCCTCTGGTTGATCCCAAAGAA 967
||||||||||||||||||||||||||||||| |||||||||| ||||||| ||| ||||
Sbjct 1870 AAAAGCAAGGCAGAGGGCGTTGGTACCAACAACTCAAATCCTCAGGTTGATACCACAGAA 1929
Query 968 CAAGAAGATGCTGGTAACATGGAGCTTGAGTTTGAGGAAGGGTTGATAGACACATACTCG 1027
||||||||||| ||||||||||||||||| |||||| ||||||| ||||||||||||||
Sbjct 1930 CAAGAAGATGCCGGTAACATGGAGCTTGAATTTGAGCAAGGGTTAATAGACACATACTCA 1989
Query 1028 GATCTTTTCGCGGAGATGAGCCCAGGTGACTATTTCAACTTTGAATGTGAATTTGCAAAG 1087
|||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1990 GATCTTTTTGCGGAGATGAACCCAGGTGACTATTTCAACTTTGAATGTGAATTTGCAAAG 2049
Query 1088 GGATTGGATTCGGATGATAATTGCAATCTCCAAAATTTAGATACTGATTTCATCGCTGAT 1147
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2050 GGGTTGGATTCGGATGATAATTGCAATCTCCAAAATTTAGATACTGATTTCATCGCTGAT 2109
Query 1148 GGACTAGATTTAGAAGAAGGGGAAATCGTCGAATGATGGTCATAGTCTTGTTCTGGCAAA 1207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2110 GGACTAGATTTAGAAGAAGGGGAAATCGTCGAATGATGGTCATAGTCTTGTTCTGGCAAA 2169
Query 1208 AAGAAATTACTATCTGTGAAACATTTTTGGTCGCCAGAAGATTATGTTCATGCCTGAAGC 1267
||| ||||||| ||||||||||||||||| || |||||||||||||||||||||
Sbjct 2170 AAGGAATTACTCTCTGTGAAACATTTTTG------AG--GATTATGTTCATGCCTGAAGC 2221
Query 1268 TCTCTTGTTCAAGCACATTAGCTATTCTTGGCACCAGCCAAAGCTTTTACTGGAATGCAA 1327
|||||||||| |||||||||||||| ||||| | |||||||||||||||||||||||||
Sbjct 2222 TCTCTTGTTCGAGCACATTAGCTATACTTGGTAATAGCCAAAGCTTTTACTGGAATGCAA 2281
Query 1328 TA-GCCACAGCACTGATGATCATTAAGTTTTCGGTTTGGGCTTTGATCAACATGTATTT- 1385
|| ||||||||||||||| |||| ||||||||||| |||||||||||||||| ||||||
Sbjct 2282 TAAGCCACAGCACTGATGGTCAT-AAGTTTTCGGTCTGGGCTTTGATCAACAGGTATTTC 2340
Query 1386 TTT-GTTGTAAACCAGATTACTAGGCTGTTCTGTAGTGTGTAGCAAACTTGATTGTTTAC 1444
||| || ||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 2341 TTTTGTAGTAAACCAGATTACTAGGCTGTTCTGTGGTTTGTAGCAAACTTGATTGTTTAC 2400
Query 1445 ATACAAGATTAGTTAAACTTAAGAGAATGTCTCCGAAACTTTTGTTCAGACTTATCCTCC 1504
||||||||| |||||| ||||||| | |||||||||||||||||||||| ||||||||||
Sbjct 2401 ATACAAGAT-AGTTAA-CTTAAGA-A-TGTCTCCGAAACTTTTGTTCAGTCTTATCCTCC 2456
Query 1505 TACAGATCCTTATAAATTAATCTTGTTGTGTGTCAGACCTT-TTTCATAGTCAATGTAAT 1563
|| ||||||| |||||||||||||||||| | ||||| ||| ||| ||||||||||||||
Sbjct 2457 TATAGATCCTCATAAATTAATCTTGTTGTCTTTCAGATCTTCTTT-ATAGTCAATGTAAT 2515
Query 1564 AACAGACCAAACTTTGTA 1581
| |||||||||| |||||
Sbjct 2516 A-CAGACCAAACCTTGTA 2532
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78162248565
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5