BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg470484 Length=1228 Score E Sequences producing significant alignments: (Bits) Value AT1G04960.2 | Symbols: | Protein of unknown function (DUF1664)... 1620 0.0 > AT1G04960.2 | Symbols: | Protein of unknown function (DUF1664) | chr1:1407801-1410868 REVERSE LENGTH=1669 Length=1669 Score = 1620 bits (877), Expect = 0.0 Identities = 998/1055 (95%), Gaps = 13/1055 (1%) Strand=Plus/Plus Query 178 AGGTGTATCTGGTTCGATCGTATTGAGACATGGGAGGTTGTCTGACCTAATAGCCCAGCT 237 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 549 AGGTGTATCTGGTTCGATCGTATTGAGACATGGGAGGTTGTCTGACCTAATAGCCCAACT 608 Query 238 TCAAGATTTACTCAAAGGGGCTGAAGGAGTTGAAAGCACTCCATTTAAGTATGATGGTGC 297 |||||| |||||||| || ||| ||||||||||||||||||| ||||||||||| ||||| Sbjct 609 TCAAGACTTACTCAATGGTGCTCAAGGAGTTGAAAGCACTCCTTTTAAGTATGACGGTGC 668 Query 298 ACTCCTAGCTGCTCAGATTCGACAGCTTGCAAACGAGATCAAAGAACTAACTATGACCAA 357 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 669 ACTCCTTGCTGCTCAGATTCGACAGCTTGCAAACGAGATCAAAGAACTAACTATGACCAA 728 Query 358 TCCAGTTACCATCTTTAATGGAGATTCAAACTCCAATGGCTATGCATCTTACCTGGTTCC 417 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 729 TCCAGTTACCATCTTTAATGGAGATTCAAACTCCAGTGGCTATGCATCTTACCTGGTTCC 788 Query 418 TGCGGCTGCCGTTGGAGCTATGGGCTACTGCTACATGTGGTGGAAGGGCTGGTCATTTTC 477 ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 789 AGCGGCTGCCGTTGGAGCTATGGGGTACTGCTACATGTGGTGGAAGGGCTGGTCGTTTTC 848 Query 478 GGATGCAATGTTTGTGACAAAGAAAAATATGGCTGATGCGGTTGCCTCTGTTTCGAAACA 537 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 849 AGATGCAATGTTTGTGACAAAGAAAAATATGGCTGATGCGGTTGCCTCTGTTTCGAAACA 908 Query 538 ACTAGACGATTTGTCAGACACATTAGCGTCAACAAGAAAACATCTTTCTAATAAGCTAGC 597 |||||||||||||||||||||||||||||||||||| |||||||||||| | |||||||| Sbjct 909 ACTAGACGATTTGTCAGACACATTAGCGTCAACAAGGAAACATCTTTCTCAGAAGCTAGC 968 Query 598 GACCTTGGATTGGAAGGTGGAAGAGCAGAACGAGACATCTAAAATGATCTTAAGTGATGT 657 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 969 GACCTTGGATTGGAAGGTGGAAGAGCAGAATGAGACATCTAAAATGATCTTAAGTGATGT 1028 Query 658 AACTGAGATGAGGTCAAGCATTTCGCAAATTGGGTTTGATTTTAAGCAACTAAATGAAAT 717 ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1029 TACTGAGATGAGATCAAGCATTTCGCAAATTGGGTTTGATTTTAAGCAACTTAATGAAAT 1088 Query 718 GATTTCTGGAATAGAAGGGAAGATTGGAAGTCTTGAAAGCAAACAAGATGTGACCCTCTC 777 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1089 GATTTCTGGAATAGAAGGGAAGATTGAAAGTCTTGAAAGCAAACAAGATGTGACCCTCTC 1148 Query 778 AGGACTATGGCATCTATGTCAAGTTGCAGGCGTTAAAGATAGCACAAGCACTAAAGTATT 837 |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| Sbjct 1149 TGGACTATGGCATCTATGTCAAGTTGCAGGCGTTAAAGACAGCACAAGTACTAAAGTATT 1208 Query 838 TCAGGATGTTGGTGCGAGATTACCTATCGATGGAAAACCATATACTAATAATTCTCTCTC 897 |||||||||||||| |||||||||||| ||||||||||||| ||||||| ||||||||| Sbjct 1209 TCAGGATGTTGGTGAGAGATTACCTATTGATGGAAAACCATCCACTAATACTTCTCTCTC 1268 Query 898 GGGTCTGCGGTTTCTGACGGAAGGCAAAGAGGATGCAAACGTAATACACAAGCCGGTTTT 957 |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | Sbjct 1269 TGGTCTGCGGTTTCTGACGGAAGGCAAAGAGGATGCAAATGTAATACACAAGCCGGTTAT 1328 Query 958 GGCGAAAGAAAT-AGCGGTGGTGGAGGAAAAAACAAAAG-C-C-GCAACCGTGACAAGAA 1013 |||||||||||| | |||| ||| |||||||||||||| | | ||| | | || | ||| Sbjct 1329 GGCGAAAGAAATTAT-GGTGATGGGGGAAAAAACAAAAGTCACTGCAGCGG-GA-A-GAA 1384 Query 1014 GCAGAGTTCATAGAGCGTTTCCGGGTGGAATATCTTGGGTACGGGATGTTTCAGGACTAT 1073 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1385 GCAGAGTTCATAGAGCGTTTCCAGGTGGAATATCTTGGGTACGGGATGTTTCAGGACTAT 1444 Query 1074 CCTAATACTATTTTGGCTGATATACGAAGAATTTGCTTGTATTCGTCCCAAATTCTGATA 1133 ||||||| |||||||| |||||||| ||||| |||||||||||||||||||||||||||| Sbjct 1445 CCTAATATTATTTTGGTTGATATACAAAGAAATTGCTTGTATTCGTCCCAAATTCTGATA 1504 Query 1134 CTGGGACTGGCAATTATTTTTTCATGTaaaaaagaagaaaagaaaaaCTACATATGTTAT 1193 |||||||||||||||||||||||||||||||| |||||||| | ||||||||||||| Sbjct 1505 CTGGGACTGGCAATTATTTTTTCATGTAAAAA-GAAGAAAA-AT---CTACATATGTTAT 1559 Query 1194 TGCATCCACCAACAATTTGGTTTTCCCCTAATTAT 1228 ||||||||||||||||||||||| ||||||||||| Sbjct 1560 TGCATCCACCAACAATTTGGTTTGCCCCTAATTAT 1594 Score = 178 bits (96), Expect = 1e-43 Identities = 172/204 (84%), Gaps = 23/204 (11%) Strand=Plus/Plus Query 1 TTTAAAAAGTATTTATCTTTCTGGTCAATCAAAGCTAAAATTGAGGTCTAGA-GG----A 55 ||| |||||||||||||||| |||| |||||||||||||||||||||||| | || | Sbjct 49 TTTGAAAAGTATTTATCTTTGTGGTAAATCAAAGCTAAAATTGAGGTCTAAAGGGCAAAA 108 Query 56 -CG-G---TAATCGGTCTCTTACGGTGGCTTGGCGACACGGAACAGAGAA-T--T----A 103 | | |||| ||||||| |||||||||||||||||||||||||||| | | | Sbjct 109 GGGTGTCATAATTGGTCTCTCGCGGTGGCTTGGCGACACGGAACAGAGAATTAATCGAGA 168 Query 104 A------TCAGCTTGTAACCGGAATTTATGGCGATGCAAGCCGGTGTTCAGACCTCTAAG 157 | ||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 169 ATCTTTTTCAGCTTGTAACCGGAATTCATGGCGATGCAAGCCGGTGTTCAGACCTCTAAG 228 Query 158 GTCCTTATCCTACTCGGCGCAGGT 181 |||||||||||||||||||||||| Sbjct 229 GTCCTTATCCTACTCGGCGCAGGT 252 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 60341055090 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5