BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470484
Length=1228
Score E
Sequences producing significant alignments: (Bits) Value
AT1G04960.2 | Symbols: | Protein of unknown function (DUF1664)... 1620 0.0
> AT1G04960.2 | Symbols: | Protein of unknown function (DUF1664)
| chr1:1407801-1410868 REVERSE LENGTH=1669
Length=1669
Score = 1620 bits (877), Expect = 0.0
Identities = 998/1055 (95%), Gaps = 13/1055 (1%)
Strand=Plus/Plus
Query 178 AGGTGTATCTGGTTCGATCGTATTGAGACATGGGAGGTTGTCTGACCTAATAGCCCAGCT 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 549 AGGTGTATCTGGTTCGATCGTATTGAGACATGGGAGGTTGTCTGACCTAATAGCCCAACT 608
Query 238 TCAAGATTTACTCAAAGGGGCTGAAGGAGTTGAAAGCACTCCATTTAAGTATGATGGTGC 297
|||||| |||||||| || ||| ||||||||||||||||||| ||||||||||| |||||
Sbjct 609 TCAAGACTTACTCAATGGTGCTCAAGGAGTTGAAAGCACTCCTTTTAAGTATGACGGTGC 668
Query 298 ACTCCTAGCTGCTCAGATTCGACAGCTTGCAAACGAGATCAAAGAACTAACTATGACCAA 357
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 669 ACTCCTTGCTGCTCAGATTCGACAGCTTGCAAACGAGATCAAAGAACTAACTATGACCAA 728
Query 358 TCCAGTTACCATCTTTAATGGAGATTCAAACTCCAATGGCTATGCATCTTACCTGGTTCC 417
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 729 TCCAGTTACCATCTTTAATGGAGATTCAAACTCCAGTGGCTATGCATCTTACCTGGTTCC 788
Query 418 TGCGGCTGCCGTTGGAGCTATGGGCTACTGCTACATGTGGTGGAAGGGCTGGTCATTTTC 477
||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 789 AGCGGCTGCCGTTGGAGCTATGGGGTACTGCTACATGTGGTGGAAGGGCTGGTCGTTTTC 848
Query 478 GGATGCAATGTTTGTGACAAAGAAAAATATGGCTGATGCGGTTGCCTCTGTTTCGAAACA 537
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 849 AGATGCAATGTTTGTGACAAAGAAAAATATGGCTGATGCGGTTGCCTCTGTTTCGAAACA 908
Query 538 ACTAGACGATTTGTCAGACACATTAGCGTCAACAAGAAAACATCTTTCTAATAAGCTAGC 597
|||||||||||||||||||||||||||||||||||| |||||||||||| | ||||||||
Sbjct 909 ACTAGACGATTTGTCAGACACATTAGCGTCAACAAGGAAACATCTTTCTCAGAAGCTAGC 968
Query 598 GACCTTGGATTGGAAGGTGGAAGAGCAGAACGAGACATCTAAAATGATCTTAAGTGATGT 657
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 969 GACCTTGGATTGGAAGGTGGAAGAGCAGAATGAGACATCTAAAATGATCTTAAGTGATGT 1028
Query 658 AACTGAGATGAGGTCAAGCATTTCGCAAATTGGGTTTGATTTTAAGCAACTAAATGAAAT 717
||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1029 TACTGAGATGAGATCAAGCATTTCGCAAATTGGGTTTGATTTTAAGCAACTTAATGAAAT 1088
Query 718 GATTTCTGGAATAGAAGGGAAGATTGGAAGTCTTGAAAGCAAACAAGATGTGACCCTCTC 777
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1089 GATTTCTGGAATAGAAGGGAAGATTGAAAGTCTTGAAAGCAAACAAGATGTGACCCTCTC 1148
Query 778 AGGACTATGGCATCTATGTCAAGTTGCAGGCGTTAAAGATAGCACAAGCACTAAAGTATT 837
|||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 1149 TGGACTATGGCATCTATGTCAAGTTGCAGGCGTTAAAGACAGCACAAGTACTAAAGTATT 1208
Query 838 TCAGGATGTTGGTGCGAGATTACCTATCGATGGAAAACCATATACTAATAATTCTCTCTC 897
|||||||||||||| |||||||||||| ||||||||||||| ||||||| |||||||||
Sbjct 1209 TCAGGATGTTGGTGAGAGATTACCTATTGATGGAAAACCATCCACTAATACTTCTCTCTC 1268
Query 898 GGGTCTGCGGTTTCTGACGGAAGGCAAAGAGGATGCAAACGTAATACACAAGCCGGTTTT 957
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct 1269 TGGTCTGCGGTTTCTGACGGAAGGCAAAGAGGATGCAAATGTAATACACAAGCCGGTTAT 1328
Query 958 GGCGAAAGAAAT-AGCGGTGGTGGAGGAAAAAACAAAAG-C-C-GCAACCGTGACAAGAA 1013
|||||||||||| | |||| ||| |||||||||||||| | | ||| | | || | |||
Sbjct 1329 GGCGAAAGAAATTAT-GGTGATGGGGGAAAAAACAAAAGTCACTGCAGCGG-GA-A-GAA 1384
Query 1014 GCAGAGTTCATAGAGCGTTTCCGGGTGGAATATCTTGGGTACGGGATGTTTCAGGACTAT 1073
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1385 GCAGAGTTCATAGAGCGTTTCCAGGTGGAATATCTTGGGTACGGGATGTTTCAGGACTAT 1444
Query 1074 CCTAATACTATTTTGGCTGATATACGAAGAATTTGCTTGTATTCGTCCCAAATTCTGATA 1133
||||||| |||||||| |||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 1445 CCTAATATTATTTTGGTTGATATACAAAGAAATTGCTTGTATTCGTCCCAAATTCTGATA 1504
Query 1134 CTGGGACTGGCAATTATTTTTTCATGTaaaaaagaagaaaagaaaaaCTACATATGTTAT 1193
|||||||||||||||||||||||||||||||| |||||||| | |||||||||||||
Sbjct 1505 CTGGGACTGGCAATTATTTTTTCATGTAAAAA-GAAGAAAA-AT---CTACATATGTTAT 1559
Query 1194 TGCATCCACCAACAATTTGGTTTTCCCCTAATTAT 1228
||||||||||||||||||||||| |||||||||||
Sbjct 1560 TGCATCCACCAACAATTTGGTTTGCCCCTAATTAT 1594
Score = 178 bits (96), Expect = 1e-43
Identities = 172/204 (84%), Gaps = 23/204 (11%)
Strand=Plus/Plus
Query 1 TTTAAAAAGTATTTATCTTTCTGGTCAATCAAAGCTAAAATTGAGGTCTAGA-GG----A 55
||| |||||||||||||||| |||| |||||||||||||||||||||||| | || |
Sbjct 49 TTTGAAAAGTATTTATCTTTGTGGTAAATCAAAGCTAAAATTGAGGTCTAAAGGGCAAAA 108
Query 56 -CG-G---TAATCGGTCTCTTACGGTGGCTTGGCGACACGGAACAGAGAA-T--T----A 103
| | |||| ||||||| |||||||||||||||||||||||||||| | | |
Sbjct 109 GGGTGTCATAATTGGTCTCTCGCGGTGGCTTGGCGACACGGAACAGAGAATTAATCGAGA 168
Query 104 A------TCAGCTTGTAACCGGAATTTATGGCGATGCAAGCCGGTGTTCAGACCTCTAAG 157
| ||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 169 ATCTTTTTCAGCTTGTAACCGGAATTCATGGCGATGCAAGCCGGTGTTCAGACCTCTAAG 228
Query 158 GTCCTTATCCTACTCGGCGCAGGT 181
||||||||||||||||||||||||
Sbjct 229 GTCCTTATCCTACTCGGCGCAGGT 252
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60341055090
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5