BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470488
Length=1473
Score E
Sequences producing significant alignments: (Bits) Value
AT1G04980.1 | Symbols: ATPDIL2-2, ATPDI10, PDI10, PDIL2-2 | PDI... 2368 0.0
> AT1G04980.1 | Symbols: ATPDIL2-2, ATPDI10, PDI10, PDIL2-2 | PDI-like
2-2 | chr1:1413644-1416144 REVERSE LENGTH=1593
Length=1593
Score = 2368 bits (1282), Expect = 0.0
Identities = 1423/1489 (96%), Gaps = 18/1489 (1%)
Strand=Plus/Plus
Query 1 GAGAAGAAAGAGAGGGAAGAAACTATGGAAAGAAAAATGTACAAATCAACGTTGTTCACA 60
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 1 GAGAAGAAAGAGAGGGAAGAAACTATGGAAAGAAAAATGTACAAATCAACGGTGTTCCCA 60
Query 61 ATTTGCTGCCTGTTGTTTGCCTTGTTCGATCGCGGCAATGCTCTCTATGGATCTTCTTCG 120
|||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 61 ATTTGCTGTCTGTTGTTTGCCTTGTTCGATCGCGGTAATGCTCTCTATGGATCTTCGTCG 120
Query 121 CCTGTTCTTCAACTCACTCCATCTAATTTCAAGTCTAAGGTTCTTAATTCAAATGGTGTC 180
||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 121 CCTGTGCTTCAACTCACTCCTTCTAATTTCAAGTCTAAGGTTCTTAATTCAAATGGAGTC 180
Query 181 GTTTTGGTAGAGTTCTTTGCGCCATGGTGTGGTCATTGTCAATCTCTAACACCAACTTGG 240
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 181 GTTTTGGTAGAGTTCTTTGCGCCATGGTGCGGTCATTGTCAATCTCTAACACCAACTTGG 240
Query 241 GAGAAGGTTGCTAATACCTTGAAAGGTATTGCTACTGTGGCAGCCATTGATGCTGACGCT 300
||||| ||||| | ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GAGAAAGTTGCCAGTACTTTGAAAGGTATTGCTACTGTGGCAGCCATTGATGCTGACGCT 300
Query 301 CACAAGTCTGTCTCTCAGGATTATGGTGTGAGGGGTTTCCCAACCATTAAAGTATTTGTT 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 301 CACAAGTCTGTCTCTCAGGATTATGGTGTGAGGGGTTTCCCAACCATTAAAGTATTCGTT 360
Query 361 CCCGGGAAGCCTCCAATTGATTACCAAGGAGCAAGGGATGCCAAATCCATTTCTCAATTT 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 CCCGGGAAGCCTCCAATTGATTACCAAGGAGCAAGGGATGCCAAATCCATTTCTCAATTT 420
Query 421 GCTATCAAGCAGATTAAGACGCTGTTAAAGGATCGTTTGGATGGTAAAACAACTGGTACA 480
|||||||||||||| ||| | ||||||||||||||||||||||||||||||| ||| |||
Sbjct 421 GCTATCAAGCAGATAAAGGCACTGTTAAAGGATCGTTTGGATGGTAAAACAAGTGGCACA 480
Query 481 AAAAAT------GG----AG-GAG--G-A-AAATCTGAGCCTAGCGCCTCTGTGGAACTA 525
|||||| || || ||| | | |||||||||||||| |||||||| ||||||
Sbjct 481 AAAAATGGAGGAGGATCCAGTGAGAAGAAGAAATCTGAGCCTAGTGCCTCTGTCGAACTA 540
Query 526 AACTCTAGCAACTTTGATGACTTGGTCGTTGAAAGCAAACAACTTTGGATTGTCGAGTTT 585
|||||||||||||||||||| |||||| |||||||||| ||||||||||||| ||||||
Sbjct 541 AACTCTAGCAACTTTGATGAGTTGGTCACTGAAAGCAAAGAACTTTGGATTGTGGAGTTT 600
Query 586 TTTGCACCTTGGTGTGGACACTGCAAAAAGCTAGCTCCTGAGTGGAAAAAGGCTGCTAAC 645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 TTTGCACCTTGGTGTGGACACTGCAAAAAGCTAGCTCCTGAGTGGAAAAAGGCTGCTAAC 660
Query 646 AAGTTGCAGGGGAAGGTCAAACTAGGTCATGTCAATTGTGATGCTGAGCAGTCGATAAAG 705
|| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 AATTTGAAGGGGAAGGTCAAACTAGGTCATGTCAATTGTGATGCTGAGCAGTCGATAAAG 720
Query 706 AGCAGATTCAAAGTGCAAGGATTCCCCACTATCTTGGTCTTTGGTGCAGACAAAAGTAGC 765
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 721 AGCAGATTCAAAGTGCAAGGATTCCCCACTATCTTGGTCTTTGGTTCAGACAAAAGTAGC 780
Query 766 CCAGTACCTTATGAGGGTGCTAGATCTGCATCAGCAATAGAATCTTTTGCTCTGGAACTG 825
||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |
Sbjct 781 CCAGTACCTTATGAGGGTGCTAGATCTGCATCAGCTATCGAATCTTTTGCTCTGGAACAG 840
Query 826 CTAGAATCCAATGCTGGACCTGTTGAAGTAACTGAACTAACTGGGCCGGATGTCATGGAA 885
||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct 841 CTAGAATCCAATGCTGGTCCTGCTGAAGTAACTGAACTAACTGGGCCGGATGTCATGGAA 900
Query 886 GAGAAGTGTGGTCCCGCTGCTATTTGTTTTGTTTCTTTCTTACCTGACATTCTGGACTCA 945
|| ||||||||| | |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 901 GATAAGTGTGGTTCTGCTGCTATTTGTTTTGTTTCTTTCTTACCTGACATTTTGGACTCA 960
Query 946 AAAGCTGAAGGAAGGAACAAGTATATAGAGATGTTATTATCAGTAGCAGACAAGTTTAAG 1005
|||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct 961 AAAGCTGAAGGAAGGAACAAGTATCTAGAGATGTTATTATCAGTTGCAGACAAGTTTAAG 1020
Query 1006 AAAGACCCTTACGGCTTTGTGTGGGTGGCTGCTGGGAAGCAACCTGATTTGGAGAAGCGT 1065
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 AAAGACCCTTACGGCTTTGTGTGGGTGGCTGCTGGGAAGCAACCTGATTTGGAGAAGCGT 1080
Query 1066 GTTGGTGTTGGAGGATATGGTTATCCAGCAATGGTAGCCTTAAACGCCAAGAAAGGAGCT 1125
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1081 GTTGGTGTTGGAGGATATGGTTATCCAGCAATGGTAGCCTTAAACGCAAAGAAAGGAGCT 1140
Query 1126 TATGCTCCACTTAAAAGCGGTTTTGAGGTTAAACACCTCAAAGATTTCGTAAAGGAAGCT 1185
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 1141 TATGCTCCACTTAAAAGCGGTTTTGAGGTTAAACACCTCAAAGATTTCGTTAAGGAGGCT 1200
Query 1186 GCGAAAGGAGGAAAAGGGAATTTGCCTATAGACGGAACAATGGAGATAGTGAAGACAGAA 1245
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1201 GCGAAAGGAGGAAAAGGGAATTTGCCTATAGACGGAACTATGGAGATAGTGAAGACAGAA 1260
Query 1246 GCTTGGGATGGTAAAGATGGAGAGGTGGTTGATGCAGATGAATTCTCACTTGAAGACCTC 1305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1261 GCTTGGGATGGTAAAGATGGAGAGGTGGTTGATGCAGATGAATTCTCACTTGAAGACCTC 1320
Query 1306 ATGGGAAATGATGATGATGCCTCCACTGAGTCCAAGGACGACTTGTGAACTTCTCTTTTA 1365
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1321 ATGGGAAATGATGATGAAGCCTCCACTGAGTCCAAGGACGACTTGTGAACTTCTCTTTTA 1380
Query 1366 CCTCATTGATAAGGGTTT-GGTTTCTTGAAAGACTTAACGTGTCCCACTCAAGGACAATG 1424
|||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct 1381 CCTCATTGATAAGGGTTTTGGTTTCTTGAAAGACTTAAAGTGTCCCACTCAAGGACAATG 1440
Query 1425 ATATCATTTTAAAGAGTTAGAACAGAGAGTATACACTTTTGGATTCCAT 1473
||||||||| ||||||||||||||||| ||||||||||| ||||||||
Sbjct 1441 ATATCATTTCAAAGAGTTAGAACAGAG--TATACACTTTTAGATTCCAT 1487
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72640188615
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5