BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470491
Length=1087
Score E
Sequences producing significant alignments: (Bits) Value
AT1G05000.2 | Symbols: | Phosphotyrosine protein phosphatases ... 865 0.0
> AT1G05000.2 | Symbols: | Phosphotyrosine protein phosphatases
superfamily protein | chr1:1425601-1428782 FORWARD LENGTH=1192
Length=1192
Score = 865 bits (468), Expect = 0.0
Identities = 614/680 (90%), Gaps = 28/680 (4%)
Strand=Plus/Plus
Query 426 GGAGCCATTTGTGAATATTCCTGACCGTAAAATCCGCATGGCACTTAAAGTGCTTCTAGA 485
||||||||||||||||||||| |||| |||||||||||||||||| ||||||||||||||
Sbjct 515 GGAGCCATTTGTGAATATTCCAGACCATAAAATCCGCATGGCACTGAAAGTGCTTCTAGA 574
Query 486 TGAGAAAAACCATCCTGTTCTGATTCACTGTAAGCGAGGGAAGCATCGGACTGGTTGTCT 545
||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||
Sbjct 575 TGAGAAAAACCATCCTGTTCTGATTCATTGTAAGCGAGGCAAGCATCGGACCGGTTGTCT 634
Query 546 TGTTGGTTGCTTGAGAAAGCTCCAAAAATGGTGTTTGACATCGATATTCGACGAGTACCA 605
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 635 TGTTGGTTGCTTGAGGAAGCTCCAGAAATGGTGTTTGACATCGATATTCGACGAGTACCA 694
Query 606 GCGATTCGCAGCAGCGAAAGCTAGAGTTTCAGATCAAAGATTCATGGAAACATTCGATGT 665
||||| ||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 695 ACGATTTGCAGCAGCGAAAGCTAGAGTTTCAGATCAAAGATTCATGGAGATATTCGATGT 754
Query 666 TTCCAGCTTCAATCATATTCCAATGTCTTTCTCCTGTTCCATCAGATAAACAGGGGAAGC 725
||||||||||| ||||||||||||||| ||||| ||||||||||| ||||||||||||||
Sbjct 755 TTCCAGCTTCAGTCATATTCCAATGTCATTCTCTTGTTCCATCAGGTAAACAGGGGAAGC 814
Query 726 TAAAATCTTCAGATAAAAAGGAGAGATTAATCATATTAGAGTTCCAGAGGAAACATTCTT 785
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 TAAAATCTTCAGATAAAAAGGAGAGATTAATCATATTAGAGTTCCAGAGGAAACATTCTT 874
Query 786 CTCTTTCTTTACCTTTCTCTGGAATCAATAATAATATTTCGAGAAAAGAAAAGGTTTAC- 844
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 875 CTCTTTCTTTACCTTTCTCTGGAATCAATAATACTATTTCGAGAAAAGAAAAGGTTTTCG 934
Query 845 TT-T-A------CT-C--T--GtttttttCCTGCTCAGTGTAAGCACTAA-GGTAGATAA 890
|| | | || | | |||||||| |||||||||||||||| ||| |||||||||
Sbjct 935 TTGTTATAATGACTTCACTCTGTTTTTTTACTGCTCAGTGTAAGCA-TAAAGGTAGATAA 993
Query 891 ATACGTATACAAATACAAGTAAATTATATAGGAGTTTGTTTAGGAAGATATATATTTTCT 950
|||||||| | ||| ||||||| |||| ||||||||||||||||| |||| ||||||||
Sbjct 994 TTACGTATATATATA-AAGTAAACTATACAGGAGTTTGTTTAGGAATATATGTATTTTCT 1052
Query 951 TGGATTATCCCAAATGTTGCATAACGATTATTACTTGCTCATATATTTCATTTCTTCAGT 1010
||| ||||||| |||||||| |||||||||||| |||||||||||||| ||||||||
Sbjct 1053 TGGGTTATCCCGAATGTTGCTTAACGATTATTA---GCTCATATATTTCAATTCTTCAGA 1109
Query 1011 ACATAATTTGTTATCATCAAGAGCA-AGGAGATAAT--TAACTACCATCAGTGTGTAAAA 1067
|||| ||||||||| ||| | | | |||| | ||| || ||||||||||||||||||
Sbjct 1110 ACATGATTTGTTATTATCGTGTGTAGAGGA-A-AATGCTA-CTACCATCAGTGTGTAAA- 1165
Query 1068 ATAATTTGTTCATTGTAATG 1087
||||||||||| |||||||
Sbjct 1166 -TAATTTGTTCAATGTAATG 1184
Score = 584 bits (316), Expect = 5e-166
Identities = 388/422 (92%), Gaps = 7/422 (2%)
Strand=Plus/Plus
Query 9 CCATTACTTGACTCTCCTCACCAAAAGATTCAACC-TTTCTCTGATTCCCAGTTCAGATA 67
|||||||| ||||||||||||| |||||||||||| |||||||| |||||| |||||| |
Sbjct 1 CCATTACTCGACTCTCCTCACCTAAAGATTCAACCTTTTCTCTGTTTCCCAATTCAGAGA 60
Query 68 TGAAGCTTGTGGAGAAGACGATTGCTACGGAGGAGGACGATAATGGAGAAGATGTCTGTC 127
||||||||||||||||||||| | |||| ||| ||||| |||||||||||| |||| |
Sbjct 61 TGAAGCTTGTGGAGAAGACGACTACTACAGAGCAGGAC---AATGGAGAAGATTTCTGCC 117
Query 128 GCA-C--CATCGAGGTTTCCGAGGTTGGCAGAAACGGGTTTCAGGCTCCGGACGGTGAAG 184
||| | ||||||||||||||||||| |||||||| |||||||||||||| ||||||||
Sbjct 118 GCACCATCATCGAGGTTTCCGAGGTTAACAGAAACGTGTTTCAGGCTCCGGGCGGTGAAG 177
Query 185 CTGATCCCTTTCGAGTTGTCTCCGGCGAAGAACTTAACCTAATTCCGCCGCTCAACTTCT 244
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 178 CTGATCCCTTTCGAGTTGTCTCCGGCGAAGAACTTCACCTAATTCCGCCGCTCAACTTCT 237
Query 245 CCATGGTCGATAACGGTATATTCCGGTCTGGATTTCCTGATTCAGCTAACTTCTCCTTTC 304
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 238 CCATGGTCGATAACGGTATATTCCGGTCTGGATTCCCTGATTCAGCTAACTTCTCCTTTC 297
Query 305 TCCAGACTCTCGGCCTCCGCTCAATCATATACTTGTGTCCGGAGCCTTACACTGAAAGCA 364
||||||||||||| ||||||||||||||||||||||| |||||||| ||| | || ||||
Sbjct 298 TCCAGACTCTCGGTCTCCGCTCAATCATATACTTGTGCCCGGAGCCCTACCCAGAGAGCA 357
Query 365 ATCTCCAGTTCCTTAAATCCAATGGAATTAGGCTTTTTCAGTTTGGCATTGAAGGCAATA 424
|||||||||||||||||||||||||||| |||||||| |||||||| ||||||||||| |
Sbjct 358 ATCTCCAGTTCCTTAAATCCAATGGAATCAGGCTTTTCCAGTTTGGTATTGAAGGCAACA 417
Query 425 AG 426
||
Sbjct 418 AG 419
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53262778245
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5