BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470494
Length=1706
Score E
Sequences producing significant alignments: (Bits) Value
AT1G05030.1 | Symbols: | Major facilitator superfamily protein... 2543 0.0
> AT1G05030.1 | Symbols: | Major facilitator superfamily protein
| chr1:1438152-1441417 REVERSE LENGTH=1779
Length=1779
Score = 2543 bits (1377), Expect = 0.0
Identities = 1624/1737 (93%), Gaps = 41/1737 (2%)
Strand=Plus/Plus
Query 1 AGTCTAGCTCTCCGATCATGTGGGTGACGAATACCGTAATTCTACATCAG-CCCAATTCT 59
|||||||||||||||||||||||||||||||||||||| ||||| ||| | |||||||||
Sbjct 16 AGTCTAGCTCTCCGATCATGTGGGTGACGAATACCGTACTTCTATATC-GACCCAATTCT 74
Query 60 CTGACCCGATTAACCTTTTCTTACCCGACCCGACTCACCCACTCTCGTAAAGTCTCTCCC 119
||| ||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||
Sbjct 75 ATGAACCGATTAACCTTTTCTTACCCGACCCGACTCGCCCACTCTCGTAAAGCCTCTTCC 134
Query 120 TTTTCCCG---C--T---TCTT----GAGGAAGAATCGGGTTACGGCACTGTCGACGACG 167
|||||||| | | |||| ||||||||| ||||||||| || | | | |||||
Sbjct 135 TTTTCCCGTTTCTTTCGGTCTTCAAAGAGGAAGAAGCGGGTTACGACA-T-T-GTCGACG 191
Query 168 AAGAAACCAGATGAAGATCACGAGTTATCGCCAGATGAGAAGCTGGAGAAATTCTCCGCT 227
|||||||||||||| ||||||||| ||||||||| | || ||||||||||||||||
Sbjct 192 AAGAAACCAGATGACGATCACGAGATATCGCCAG-T--TCCGCCGGAGAAATTCTCCGCT 248
Query 228 GATGTGGGATGGCTATCGGCTTTTCCTCATGTATCAGTTGCTTCTATGGCCAATTTTCTC 287
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 249 GATTTGGGATGGTTATCGGCTTTTCCTCATGTATCAGTTGCTTCTATGGCCAATTTTCTC 308
Query 288 TTTGGTTATCACATTGGAGTGATGAATGGCCCCATTGTGTCTATTGCGCGTGAACTTGGG 347
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 309 TTTGGTTATCACATTGGAGTGATGAATGGCCCCATCGTGTCTATTGCGCGTGAACTTGGG 368
Query 348 TTTGAAGGCAATTCTATTCTTGAGGGTCTTGTTGTGAGCATATTTATTGCCGGTGCATTT 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 369 TTTGAAGGCAATTCTATTCTTGAGGGTCTTGTTGTGAGCATATTTATTGCCGGTGCATTT 428
Query 408 ATTGGAAGCATAGTCTCCGGTCCACTAGTTGACAAGTTTGGCTACCGACGCACCTTTCAG 467
||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 429 ATTGGTAGCATAGTCGCCGGTCCACTAGTTGACAAGTTTGGCTACCGACGCACCTTTCAG 488
Query 468 ATTGTCACGATACCCCTAATTCTTGGTGCCCTTGTGAGTGCACAAGCTAACTCCTTGGAT 527
||| ||||||||||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct 489 ATTTTCACGATACCCCTCATTCTTGGTGCCCTTGTGAGTGCACAAGCTCACTCCTTGGAT 548
Query 528 GAGATCTTATGTGGAAGATTTCTTGTTGGTCTTGGTATTGGCGTCAACACAGTTCTTGTT 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 549 GAGATCTTATGTGGAAGATTTCTTGTTGGTCTTGGTATTGGCGTCAACACAGTTCTTGTT 608
Query 588 CCTATTTATATATCCGAGGTTGCTCCGACGAAATACAGAGGTTCCCTTGGAACTTTATGT 647
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 609 CCAATATATATATCCGAGGTTGCTCCGACGAAATACAGAGGTTCCCTTGGAACTTTATGT 668
Query 648 CAAATTGGCACTTGTCTCGGGATAATCTTTTCTCTTCTCTTAGGGATTCCTGCAGAAGAT 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 669 CAAATTGGCACTTGTCTCGGGATAATCTTTTCTCTTCTCTTAGGGATTCCTGCAGAAGAT 728
Query 708 GACTCTCATTGGTGGAGGACAATGCTCTATGTAGCGAGTATGCCTGGTTTTCTTCTTGCA 767
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 729 GACCCTCATTGGTGGAGGACAATGCTCTATGTAGCGAGTATGCCTGGTTTTCTTCTTGCA 788
Query 768 CTTGGTATGCAATTTGCAGTAGAAAGTCCCCGTTGGCTCTGTAAGGTTGGACGACTGGAT 827
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 789 CTTGGTATGCAATTTGCAGTAGAAAGTCCCCGTTGGCTCTGTAAGGTTGGACGACTTGAT 848
Query 828 GATGCCAAAGTAGTGATCAGAAACATCTGGGGAGGATCTGAAGTCGAGAAAGCGGTAGAA 887
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 849 GATGCCAAAGTAGTGATAAGAAACATCTGGGGAGGATCTGAAGTCGAGAAAGCTGTAGAA 908
Query 888 GATTTTCAGTCGGTTATGAAGAATAGTGGCTCCAACTTAAATAGCAGATGGCTGGACCTT 947
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 909 GATTTTCAGTCGGTTATGAAGAATAGTGGCTCCAACTTAAATAGCAGATGGCTGGAACTC 968
Query 948 CTTGATAAACCACATTCACGAGTTGCATTCATTGGGGGCACCCTTTTTGTCCTTCAGCAA 1007
||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct 969 CTTGATAAACCACATTCACGAGTTGCATTCATTGGGGGCTCCCTTTTTGTCCTACAGCAA 1028
Query 1008 TTCGCAGGCATAAATGGTGTTCTTTATTTCTCATCTTTAACATTCCAAAATGTTGGAATC 1067
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1029 TTCGCGGGCATAAATGGCGTTCTTTATTTCTCATCTTTAACATTCCAAAATGTTGGAATC 1088
Query 1068 ACGAGTGGTGCTCAAGCAAGTCTATATGTTGGAGTCACAAATTTTGCAGGTGCTCTGTGT 1127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1089 ACGAGTGGTGCTCAAGCAAGTCTATATGTTGGAGTCACAAATTTTGCAGGTGCTCTGTGT 1148
Query 1128 GCGTCTTATTTGATTGATAAGCAAGGAAGAAAAAAGCTTCTTATTGGTAGTTACTTGGGA 1187
|||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||
Sbjct 1149 GCGTCTTATTTGATTGATAAGCAAGGAAGAAAGAAGCTTCTTATCGGTAGCTACTTGGGA 1208
Query 1188 ATGGCAGTCTCTATGTTTCTCATTGTTTATTCTGTTGGTTTCCCGTTGGATGAAGATCTG 1247
|||||||||||||||||||| ||||||||| ||||||||||||| |||||||||||||||
Sbjct 1209 ATGGCAGTCTCTATGTTTCTTATTGTTTATGCTGTTGGTTTCCCCTTGGATGAAGATCTG 1268
Query 1248 AGCCAGAGTTTGTCAATACTTGGAACACTCATGTATATATTCAGTTTTGCAATTGGAGCT 1307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1269 AGCCAGAGTTTGTCAATACTTGGAACACTCATGTATATATTCAGTTTTGCAATTGGAGCT 1328
Query 1308 GGTCCTGTAACTGGTCTCATCATCCCTGAGCTAAGTAGCAACAGAACGCGTGGGAAAATC 1367
||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 1329 GGTCCTGTAACAGGTCTCATCATCCCTGAGCTAAGCAGCAACAGAACGCGTGGAAAAATC 1388
Query 1368 ATGGGTTTCAGCTTCTCTGTACATTGGGTCTGCAACTTCTTGGTTGGTTTGTTCTTCCTG 1427
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1389 ATGGGTTTCAGCTTCTCTGTACATTGGGTCTCCAACTTCTTGGTTGGTTTGTTCTTCCTG 1448
Query 1428 GATCTGGTGGAGAAATTTGGAGTTGGAACGGTGTATGCCGGCTTTGGCAGC-GTATCATT 1486
|||||||||||||||| || ||||||||||| |||||| |||||||| | ||||||||
Sbjct 1449 GATCTGGTGGAGAAATACGGGGTTGGAACGGTCTATGCCAGCTTTGGCT-CAGTATCATT 1507
Query 1487 GTTGGCAGCGGCGTTCTCATACCGCTTCATAGTGGAAACAAAGGGTCGATCACTAGAAGA 1546
|||||||||||| |||||| ||| ||||| |||||||||||||||||||||||||||||
Sbjct 1508 GTTGGCAGCGGCATTCTCACACCTCTTCACGGTGGAAACAAAGGGTCGATCACTAGAAGA 1567
Query 1547 GATTGAAATGTCTTTGAACTCCACAGAC--C-TGAGCTAAAAAG------GGTAAAAGTG 1597
||| ||| ||||||||||||||| |||| | |||| |||||| |||| |||||
Sbjct 1568 GATCGAACTGTCTTTGAACTCCAGAGACGACCTGAGTTAAAAAAAAAAACGGTATAAGTG 1627
Query 1598 GAAGAAAGAGAGAGAGACCTCaaaaaaaTT-TCAATGTTTTTCATCAGTTGTTGTAAA-T 1655
|||||||||||| ||||||||||| || ||| |||||||||||||||||||||| |
Sbjct 1628 AAAGAAAGAGAGAAAGACCTCAAAATTTTTATCA--GTTTTTCATCAGTTGTTGTAAAAT 1685
Query 1656 --AG-T--C-TGGAAATTAGCTTGTGAGAAATCTTGTGAatatatatatataCATAG 1706
| | | ||||||||||||||||||||||||||||| |||||| |||||| |||
Sbjct 1686 GTAAATAGCCTGGAAATTAGCTTGTGAGAAATCTTGTGAGTATATAGATATACTTAG 1742
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84336915600
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5