BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470495
Length=1425
Score E
Sequences producing significant alignments: (Bits) Value
AT1G05055.1 | Symbols: ATGTF2H2, GTF2H2 | general transcription... 2285 0.0
> AT1G05055.1 | Symbols: ATGTF2H2, GTF2H2 | general transcription
factor II H2 | chr1:1448718-1450887 REVERSE LENGTH=1496
Length=1496
Score = 2285 bits (1237), Expect = 0.0
Identities = 1337/1386 (96%), Gaps = 3/1386 (0%)
Strand=Plus/Plus
Query 1 TTTGTAATTAGGTCTCTTTGGCTGTGAGATTAAGGATGAGTAATCAAAGAAAGAGATCAA 60
|||||||||||||||||| | | ||||| |||| ||||||||||||||||||||||||||
Sbjct 1 TTTGTAATTAGGTCTCTTAGACGGTGAGGTTAACGATGAGTAATCAAAGAAAGAGATCAA 60
Query 61 ACGCA-GAAAGAGAAGAAGACGACGACGAAGATGCGGAAGGTATCGGCGAGTGGGAGAGA 119
||| | |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 61 ACG-ATGAAAGAGAAGAAGAGGACGACGAAGATGCGGAAGGTATCGGCGAGTGGGAGAGA 119
Query 120 GCTTATGTTGACGACAGATCCTGGGAGGAGTTGCAAGAGGATGAGTCTGGACTTTTACGC 179
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 GCTTATGTTGACGACCGATCCTGGGAGGAGTTGCAAGAGGATGAGTCTGGACTTTTACGG 179
Query 180 CCAATTGATAACAGTGCCATTTACCATGCTCAGTATCGCCGCCGTCTCCGTATGCTCTCC 239
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 180 CCAATTGATAACAGTGCCATTTACCATGCTCAGTATCGCCGCCGTCTTCGTATGCTCTCC 239
Query 240 GCCGCTGCTGCTGGTACTCGCATCCAAAAGGGGCTTATTCGCTATCTCTACATCGTCATT 299
|||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||
Sbjct 240 GCCGCTGCTGCTGGTACTCGTATCCAAAAGGGACTTATTCGATATCTCTACATCGTCATT 299
Query 300 GACTTCTCTCGGGCAGCTGCAGAAATGGATTTCAGACCAAGCCGGATGGCCATAATGGCC 359
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 300 GACTTCTCTCGGGCAGCTGCGGAAATGGATTTCAGACCAAGCCGGATGGCTATAATGGCC 359
Query 360 AAACATGTTGAAGCTTTCATTAGAGAGTTCTTTGACCAGAATCCTCTGAGTCAAATTGGT 419
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 AAACATGTCGAAGCTTTCATTAGAGAGTTCTTTGACCAGAATCCTCTGAGTCAAATTGGG 419
Query 420 TTGGTCTCTATAAAAAATGGAGTTGCGCATACATTAACAGATCTTGGTGGTAGTCCTGAG 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 TTGGTCTCTATAAAAAATGGAGTTGCGCATACATTAACAGATCTTGGTGGTAGTCCTGAG 479
Query 480 ACTCACATTAAAGCGTTGATGGGAAAGTTGGAAGCCTTGGGTGACTCCTCTTTGCAGAAC 539
|||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 480 ACTCACATCAAAGCGTTGATGGGGAAGTTGGAAGCTTTGGGTGACTCCTCTTTGCAGAAC 539
Query 540 GCTCTGGAACTTGTACATGAGCATCTCAACCAGGTTCCATCTTATGGTCATCGCGAGGTT 599
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 540 GCTCTGGAACTTGTACATGAGCATCTCAACCAGGTTCCATCTTATGGTCACCGCGAGGTT 599
Query 600 CTGATATTGTACTCAGCTCTATGCACATGTGATCCAGGCGATATCATGGAGACCATTCAA 659
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 600 CTGATATTGTACTCAGCTTTATGCACATGTGATCCAGGCGATATCATGGAGACCATTCAA 659
Query 660 AAATGCAAGAAATCCAAATTAAGATGCTCTGTAATTGGGCTGTCTGCAGAAATGTTTATA 719
|||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||
Sbjct 660 AAATGCAAGAAATCCAAATTAAGATGTTCTGTAATTGGGCTCTCTGCAGAAATGTTCATA 719
Query 720 TGTAAACACCTCTGCCAGGAAACCGGTGGATTGTATTCAGTTGCAGTGGACGAGGTGCAT 779
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 720 TGTAAACACCTCTGCCAGGAAACTGGCGGATTGTATTCAGTTGCAGTGGACGAGGTGCAT 779
Query 780 CTAAAGGATCTTCTGCTCGAACATGCGCCTCCACCTCCGGCAATAGCAGAATTTGCAATT 839
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 CTAAAGGATCTTCTGCTTGAACATGCGCCTCCACCTCCGGCAATAGCAGAATTTGCAATT 839
Query 840 GCAAATTTGATCAAGATGGGTTTCCCACAGAGAGCTGCTGAGGGTTCAATGGCAATCTGT 899
||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |||
Sbjct 840 GCAAATTTGATCAAGATGGGTTTCCCACAAAGAGCTGCTGAGGGTTCAATGGCGATTTGT 899
Query 900 TCGTGCCATAAGGAAGTTAAGATTGGAGCTGGTTACATGTGCCCGAGATGCAAAGCTCGG 959
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 900 TCGTGTCATAAGGAAGTTAAGATTGGAGCTGGTTACATGTGCCCAAGATGCAAAGCTCGG 959
Query 960 GTATGTGACCTCCCTACGGAATGCACTATCTGCGGTCTAACACTTGTTTCATCGCCACAT 1019
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 960 GTATGTGACCTCCCTACGGAATGCACTATCTGCGGTCTAACACTTGTTTCTTCGCCGCAT 1019
Query 1020 TTAGCGAGATCATACCATCATCTCTTCCCAATTGCTCCATTTGATGAGGTGCCTGCTCTT 1079
|| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 1020 TTGGCGAGATCATACCATCATCTCTTCCCGATTGCTCCATTTGATGAGGTGCCTGCACTT 1079
Query 1080 TCAAGTCTGAATGATAATCGGAGAAAATTGGGAAAAAGTTGTTTTGGTTGCCAACAGAGC 1139
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1080 TCAAGTCTGAATGATAATCGGAGAAAATTGGGAAAGAGTTGTTTTGGTTGCCAACAGAGC 1139
Query 1140 CTAATTGGTGCAGGAAATAAACCCGGCCCATGCGTAACATGTCGTAAATGCAAGCACTAT 1199
|||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1140 CTAATTGGTGCAGGGAATAAACCCGTCCCATGCGTAACATGTCGTAAATGCAAGCACTAT 1199
Query 1200 TTCTGTCTGGACTGTGACATATACATCCACGAGAGCTTACACAACTGTCCTGGCTGTGAG 1259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 TTCTGTCTGGACTGTGACATATACATCCACGAGAGCTTACACAACTGTCCTGGCTGTGAG 1259
Query 1260 AGCATTCACCGTCCCAAATCAGTTTCCTTGATGGAAGAATGAGAGAATGAATGTGTTTAC 1319
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct 1260 AGCATTCACCGTCCCAAATCAGTTTCTTTGATGGAAGAATGAGAGAATGAATGTGTTCAC 1319
Query 1320 ACTTGCAATTACAA-TCACAATTGAGATGATGAGAGGAAGCAAATTTATTTGTGATATAG 1378
|||| |||||| || |||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 1320 ACTTCCAATTATAAATCACAATTGAGATGATGAGAGGAAGCAATTTTTTTTGTGATATAG 1379
Query 1379 GATGTT 1384
||||||
Sbjct 1380 GATGTT 1385
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70230562455
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5