BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470496
Length=970
Score E
Sequences producing significant alignments: (Bits) Value
AT1G05060.1 | Symbols: | unknown protein; Has 34 Blast hits to... 1232 0.0
> AT1G05060.1 | Symbols: | unknown protein; Has 34 Blast hits
to 34 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes
- 0 (source: NCBI BLink). | chr1:1451030-1452872 REVERSE
LENGTH=1001
Length=1001
Score = 1232 bits (667), Expect = 0.0
Identities = 743/781 (95%), Gaps = 0/781 (0%)
Strand=Plus/Plus
Query 1 AACAACAAAAGAAAATGAGTTTTCTTGCAGCAGGGAGACTCGCGGGAAAAGAAGCTGCCT 60
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1 AACAACAAAAGAAAATGAGTTTTCTTGGAGCAGGGAGACTCGCGGGAAAAGAAGCTGCCT 60
Query 61 ACTTTTTCCAAGAATCCAAACACGCCGTTAATCGTCTCGCCGAGAAATCTCCGGCCACCG 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 61 ACTTTTTCCAAGAATCCAAACACGCCGTTAATCGTCTCGCCGAGAAATCTCCGGCCACTG 120
Query 121 GGAAAAAGCTTCCATCTTCTCCGGCGGATCCACCGGAAATTCAACCTGACGTTCTTCCGG 180
| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 121 GCAAAAAGCTTCCATCTTCTCCGCCGGATCCACCGGAAATTCAACCTGACGTTCTTCCGG 180
Query 181 AGATTCTACGCCACTCTCTTCCTTCTAAAATCTATGGTCGTCCACCTGATCCTTCGTCTC 240
||||||||||||| ||||||||||| ||||| ||||||||||| ||||||||||||||||
Sbjct 181 AGATTCTACGCCATTCTCTTCCTTCCAAAATATATGGTCGTCCTCCTGATCCTTCGTCTC 240
Query 241 TCTCCCAATTCTCCAAATGGGCTCTTGAATCCGACCCAAACGCTGCAGTTTCTATTTCCC 300
||||||||||||||||||||||||||||||| ||||| ||||| |||||||||| ||||
Sbjct 241 TCTCCCAATTCTCCAAATGGGCTCTTGAATCTGACCCGAACGCAACAGTTTCTATATCCC 300
Query 301 CTGACGTCTTGAATCCTCTCAGAGGTTATGTATCTCTGCCTCAGGTCACATTCGGACGCA 360
|||| |||||||||||||||||||||||||| |||||||| || ||||| ||||| || |
Sbjct 301 CTGATGTCTTGAATCCTCTCAGAGGTTATGTGTCTCTGCCACAAGTCACTTTCGGCCGTA 360
Query 361 GAAGATGGGATCTACCAGAATCTGAGAATTCGGTTTTGGCGTCAACAGCTAATGAATTGA 420
||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GAAGATGGGATTTACCGGAATCTGAGAATTCGGTTTTGGCGTCAACAGCTAATGAATTGA 420
Query 421 GGAGAGACAGATACGGCACTCCTGTCAATCCTGAGAAATTGAAAGCTGCTGGTGAAGGCC 480
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 421 GGAGAGACAGATACGGCACTCCTGTAAATCCTGAGAAATTGAAAGCTGCTGGTGAAGGGC 480
Query 481 TTCAACATATTGGAAAGGCATTTGCAGCCGCTACTATTATCATCTTTGGCTCTGCCACTT 540
|||||||||||||||| |||||||||||||||||||||||||||||||| || |||||||
Sbjct 481 TTCAACATATTGGAAAAGCATTTGCAGCCGCTACTATTATCATCTTTGGTTCAGCCACTT 540
Query 541 TGGTCTTTGGAACGGCAGCCTCAAAACTTGACATGCATAATACCGATGACATAAGAACGA 600
|||| ||||||||||||||||| ||||||||||||| |||| | ||||||||||||||||
Sbjct 541 TGGTTTTTGGAACGGCAGCCTCGAAACTTGACATGCGTAATGCTGATGACATAAGAACGA 600
Query 601 AAGGCAAAGATCTTTTTCAGCCAAAACTGGAGTCGATGAAGGAACAAGTAGAGCCCTTAA 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 AAGGCAAAGATCTTTTTCAGCCAAAACTGGAGTCGATGAAGGAACAAGTAGAGCCCTTAA 660
Query 661 GAACTTGGGCTGGAAACATGTCGAAGAAGTGGCATATAGATAATGACGGTGGTAGTACTA 720
|||||||||||| |||||||||||||||||||||||| || ||||| ||||||| |||||
Sbjct 661 GAACTTGGGCTGAAAACATGTCGAAGAAGTGGCATATTGAGAATGAAGGTGGTAATACTA 720
Query 721 TGAAGGAGAAACCAATCTTGAAGGAGCTTTCGAAAATTCTGGGACCTAAATCTTAAAAGG 780
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 TCAAGGAGAAACCAATCTTGAAGGAGCTTTCGAAAATTCTGGGACCTAAATCTTAAAAGG 780
Query 781 C 781
|
Sbjct 781 C 781
Score = 209 bits (113), Expect = 3e-53
Identities = 165/189 (87%), Gaps = 8/189 (4%)
Strand=Plus/Plus
Query 782 TAGAGAAAACCAAACAGGAAGTTCTATATGTATGTAAGATGGAATAAGATCTTAGGTAAA 841
|||||||| |||| | |||||||||||||| |||||||| ||||||||||||||||||
Sbjct 814 TAGAGAAAGTCAAAGAAGAAGTTCTATATGTTTGTAAGATTCAATAAGATCTTAGGTAAA 873
Query 842 ATATCAAATTGTGCTGTAAAAACAAAGAAGTTTCAATTTCAATGTTGCTAAATAAATGTT 901
||||| |||||||||||| ||| |||||| ||||||||||||| ||||| |||
Sbjct 874 TTATCATATTGTGCTGTAAGAACTAAGAAG------TTTCAATGTTGCTGTATAAAGGTT 927
Query 902 GTATCGAGTGATTTAAGTTTTGTATAATAAAGTTTTAATGAGAGTTTCAATATCAATGTT 961
|||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 928 GTATCGAGTGATTTAAGTTTTGTATAATAAAGTTTTTATGAG--TTTCAATATCAATGTT 985
Query 962 TCCTACTGT 970
||||| |||
Sbjct 986 TCCTATTGT 994
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47471268915
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5