BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg470496 Length=970 Score E Sequences producing significant alignments: (Bits) Value AT1G05060.1 | Symbols: | unknown protein; Has 34 Blast hits to... 1232 0.0 > AT1G05060.1 | Symbols: | unknown protein; Has 34 Blast hits to 34 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:1451030-1452872 REVERSE LENGTH=1001 Length=1001 Score = 1232 bits (667), Expect = 0.0 Identities = 743/781 (95%), Gaps = 0/781 (0%) Strand=Plus/Plus Query 1 AACAACAAAAGAAAATGAGTTTTCTTGCAGCAGGGAGACTCGCGGGAAAAGAAGCTGCCT 60 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1 AACAACAAAAGAAAATGAGTTTTCTTGGAGCAGGGAGACTCGCGGGAAAAGAAGCTGCCT 60 Query 61 ACTTTTTCCAAGAATCCAAACACGCCGTTAATCGTCTCGCCGAGAAATCTCCGGCCACCG 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 61 ACTTTTTCCAAGAATCCAAACACGCCGTTAATCGTCTCGCCGAGAAATCTCCGGCCACTG 120 Query 121 GGAAAAAGCTTCCATCTTCTCCGGCGGATCCACCGGAAATTCAACCTGACGTTCTTCCGG 180 | ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 121 GCAAAAAGCTTCCATCTTCTCCGCCGGATCCACCGGAAATTCAACCTGACGTTCTTCCGG 180 Query 181 AGATTCTACGCCACTCTCTTCCTTCTAAAATCTATGGTCGTCCACCTGATCCTTCGTCTC 240 ||||||||||||| ||||||||||| ||||| ||||||||||| |||||||||||||||| Sbjct 181 AGATTCTACGCCATTCTCTTCCTTCCAAAATATATGGTCGTCCTCCTGATCCTTCGTCTC 240 Query 241 TCTCCCAATTCTCCAAATGGGCTCTTGAATCCGACCCAAACGCTGCAGTTTCTATTTCCC 300 ||||||||||||||||||||||||||||||| ||||| ||||| |||||||||| |||| Sbjct 241 TCTCCCAATTCTCCAAATGGGCTCTTGAATCTGACCCGAACGCAACAGTTTCTATATCCC 300 Query 301 CTGACGTCTTGAATCCTCTCAGAGGTTATGTATCTCTGCCTCAGGTCACATTCGGACGCA 360 |||| |||||||||||||||||||||||||| |||||||| || ||||| ||||| || | Sbjct 301 CTGATGTCTTGAATCCTCTCAGAGGTTATGTGTCTCTGCCACAAGTCACTTTCGGCCGTA 360 Query 361 GAAGATGGGATCTACCAGAATCTGAGAATTCGGTTTTGGCGTCAACAGCTAATGAATTGA 420 ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 361 GAAGATGGGATTTACCGGAATCTGAGAATTCGGTTTTGGCGTCAACAGCTAATGAATTGA 420 Query 421 GGAGAGACAGATACGGCACTCCTGTCAATCCTGAGAAATTGAAAGCTGCTGGTGAAGGCC 480 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct 421 GGAGAGACAGATACGGCACTCCTGTAAATCCTGAGAAATTGAAAGCTGCTGGTGAAGGGC 480 Query 481 TTCAACATATTGGAAAGGCATTTGCAGCCGCTACTATTATCATCTTTGGCTCTGCCACTT 540 |||||||||||||||| |||||||||||||||||||||||||||||||| || ||||||| Sbjct 481 TTCAACATATTGGAAAAGCATTTGCAGCCGCTACTATTATCATCTTTGGTTCAGCCACTT 540 Query 541 TGGTCTTTGGAACGGCAGCCTCAAAACTTGACATGCATAATACCGATGACATAAGAACGA 600 |||| ||||||||||||||||| ||||||||||||| |||| | |||||||||||||||| Sbjct 541 TGGTTTTTGGAACGGCAGCCTCGAAACTTGACATGCGTAATGCTGATGACATAAGAACGA 600 Query 601 AAGGCAAAGATCTTTTTCAGCCAAAACTGGAGTCGATGAAGGAACAAGTAGAGCCCTTAA 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 601 AAGGCAAAGATCTTTTTCAGCCAAAACTGGAGTCGATGAAGGAACAAGTAGAGCCCTTAA 660 Query 661 GAACTTGGGCTGGAAACATGTCGAAGAAGTGGCATATAGATAATGACGGTGGTAGTACTA 720 |||||||||||| |||||||||||||||||||||||| || ||||| ||||||| ||||| Sbjct 661 GAACTTGGGCTGAAAACATGTCGAAGAAGTGGCATATTGAGAATGAAGGTGGTAATACTA 720 Query 721 TGAAGGAGAAACCAATCTTGAAGGAGCTTTCGAAAATTCTGGGACCTAAATCTTAAAAGG 780 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 721 TCAAGGAGAAACCAATCTTGAAGGAGCTTTCGAAAATTCTGGGACCTAAATCTTAAAAGG 780 Query 781 C 781 | Sbjct 781 C 781 Score = 209 bits (113), Expect = 3e-53 Identities = 165/189 (87%), Gaps = 8/189 (4%) Strand=Plus/Plus Query 782 TAGAGAAAACCAAACAGGAAGTTCTATATGTATGTAAGATGGAATAAGATCTTAGGTAAA 841 |||||||| |||| | |||||||||||||| |||||||| |||||||||||||||||| Sbjct 814 TAGAGAAAGTCAAAGAAGAAGTTCTATATGTTTGTAAGATTCAATAAGATCTTAGGTAAA 873 Query 842 ATATCAAATTGTGCTGTAAAAACAAAGAAGTTTCAATTTCAATGTTGCTAAATAAATGTT 901 ||||| |||||||||||| ||| |||||| ||||||||||||| ||||| ||| Sbjct 874 TTATCATATTGTGCTGTAAGAACTAAGAAG------TTTCAATGTTGCTGTATAAAGGTT 927 Query 902 GTATCGAGTGATTTAAGTTTTGTATAATAAAGTTTTAATGAGAGTTTCAATATCAATGTT 961 |||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| Sbjct 928 GTATCGAGTGATTTAAGTTTTGTATAATAAAGTTTTTATGAG--TTTCAATATCAATGTT 985 Query 962 TCCTACTGT 970 ||||| ||| Sbjct 986 TCCTATTGT 994 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 47471268915 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5