BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470498
Length=818
Score E
Sequences producing significant alignments: (Bits) Value
AT1G05070.1 | Symbols: | Protein of unknown function (DUF1068)... 1131 0.0
> AT1G05070.1 | Symbols: | Protein of unknown function (DUF1068)
| chr1:1457063-1458744 REVERSE LENGTH=877
Length=877
Score = 1131 bits (612), Expect = 0.0
Identities = 745/808 (92%), Gaps = 14/808 (2%)
Strand=Plus/Plus
Query 24 GTGTGTCAAAATCTCTAGCACCGATTTTTCTACATAGCGTCGTCT--CAG---C-TTCAG 77
|||||||||||||||||||||||||||||||| ||| |||||||| ||| | ||
Sbjct 62 GTGTGTCAAAATCTCTAGCACCGATTTTTCTAAATAACGTCGTCTCACAGTCACACACAC 121
Query 78 ACAGCTCTAAAATCTCTCTTCGAGGTTTTTCTTCACACTCGCCGAAAAATCTAATCTTTA 137
|||||||||||||| |||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct 122 ACAGCTCTAAAATCCCTCTACGAGGTTTTTCTTCAAACTCGCCGAAAAATCTAATCTTTA 181
Query 138 CGAAGACCCAGATCGGCGGATCTAGTGTTAAAATGGCGAGACACGCGGCGGCGTTGAAGA 197
||||||||||||||||||||||||| ||| |||||||||||||| |||||||| ||||||
Sbjct 182 CGAAGACCCAGATCGGCGGATCTAGAGTTGAAATGGCGAGACACACGGCGGCGCTGAAGA 241
Query 198 TCGGTCTAGCTTTACTGGGGCTGAGCATGACCGGTTACATACTTGGTCCGCCTCTCTACT 257
|||| |||||||||||||||||||||||| | |||||||| |||||||||||||||||||
Sbjct 242 TCGGGCTAGCTTTACTGGGGCTGAGCATGGCTGGTTACATTCTTGGTCCGCCTCTCTACT 301
Query 258 GGCATCTCACTGAGGCTTTGGCCGCCGTTTCCACCTCCTCTTGTCCTTCCTGCCCCTGTG 317
|||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct 302 GGCATCTCACTGAGGCTTTGGCCGCCGTTTCCGCCTCCTCTTGTCCTTCTTGCCCCTGTG 361
Query 318 AGTGCTCTCCCTATTCCGCTATCACGATTCCCAAAGAACTCAGTAATGCTTCTTACGCCG 377
| |||||| ||||||||||| |||| ||||||||||| |||||||||||||||| || |
Sbjct 362 AATGCTCTACCTATTCCGCTGTCACCATTCCCAAAGAGCTCAGTAATGCTTCTTTTGCTG 421
Query 378 ATTGTGCAAAGCACGATCCAGAGGTGAACGAAGACACTGAGAAGAACTATGCTGAACTTC 437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 422 ATTGTGCAAAGCACGATCCAGAGGTGAACGAAGACACTGAGAAGAACTATGCTGAACTTC 481
Query 438 TAAGCGAAGAACTGAAGCTGCGTGAAGCGGAATCTTTAGAGAAACACAAACGAGCAGACA 497
| | ||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 482 TTACCGAGGAACTGAAGCTGCGTGAAGCAGAATCTTTAGAGAAACACAAACGAGCAGACA 541
Query 498 TGGGGCTTTTAGAGGCCAAAAAAGTAACTTCTTCATATCAAAAGGAAGCAGATAAGTGCA 557
||||||| || |||||||| || |||||||||||||| ||||||||||||||||||||||
Sbjct 542 TGGGGCTATTGGAGGCCAAGAAGGTAACTTCTTCATACCAAAAGGAAGCAGATAAGTGCA 601
Query 558 ACTCAGGTATGGAAACATGCGAAGAAGCTCGGGAAAAAGCAGAATTAGCACTCGCCGAGC 617
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 602 ACTCGGGTATGGAAACATGCGAAGAAGCTCGAGAAAAAGCAGAATTAGCACTCGCCGAGC 661
Query 618 AGAAAAAGCTAACATCTAAGTGGGAAGAGAGAGCTCGCCAAAAAGGATGGAGAGAAGGAG 677
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 662 AGAAAAAGCTAACATCTAGGTGGGAAGAGAGAGCTCGCCAAAAAGGATGGAGAGAAGGTT 721
Query 678 CCACCAAGTCAAATGTTAAACCCAAAAGCAATGTTTAGGTTGCTTAGGAAACCCCAAAGA 737
|||||||| ||||||||||| |||||||||||||| ||||||||||||| |||| || ||
Sbjct 722 CCACCAAGCCAAATGTTAAATCCAAAAGCAATGTTCAGGTTGCTTAGGATACCC-AAGGA 780
Query 738 TCAGCAAAAGGATCTTAGTTACAAACCACTTGTGTAATTGTTTGTGAATTGGATTTTAAC 797
||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 781 TCAGCAAAAAGATCTTAGTTACAAACCACTCGTGTAATTGTTTGTGAATTGGATGCTAAC 840
Query 798 AA-A-A-----AACTATTATTATACTTT 818
|| | | |||||||||||||||||
Sbjct 841 AATATAGTGTCAACTATTATTATACTTT 868
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39835678571
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5