BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg470498 Length=818 Score E Sequences producing significant alignments: (Bits) Value AT1G05070.1 | Symbols: | Protein of unknown function (DUF1068)... 1131 0.0 > AT1G05070.1 | Symbols: | Protein of unknown function (DUF1068) | chr1:1457063-1458744 REVERSE LENGTH=877 Length=877 Score = 1131 bits (612), Expect = 0.0 Identities = 745/808 (92%), Gaps = 14/808 (2%) Strand=Plus/Plus Query 24 GTGTGTCAAAATCTCTAGCACCGATTTTTCTACATAGCGTCGTCT--CAG---C-TTCAG 77 |||||||||||||||||||||||||||||||| ||| |||||||| ||| | || Sbjct 62 GTGTGTCAAAATCTCTAGCACCGATTTTTCTAAATAACGTCGTCTCACAGTCACACACAC 121 Query 78 ACAGCTCTAAAATCTCTCTTCGAGGTTTTTCTTCACACTCGCCGAAAAATCTAATCTTTA 137 |||||||||||||| |||| ||||||||||||||| |||||||||||||||||||||||| Sbjct 122 ACAGCTCTAAAATCCCTCTACGAGGTTTTTCTTCAAACTCGCCGAAAAATCTAATCTTTA 181 Query 138 CGAAGACCCAGATCGGCGGATCTAGTGTTAAAATGGCGAGACACGCGGCGGCGTTGAAGA 197 ||||||||||||||||||||||||| ||| |||||||||||||| |||||||| |||||| Sbjct 182 CGAAGACCCAGATCGGCGGATCTAGAGTTGAAATGGCGAGACACACGGCGGCGCTGAAGA 241 Query 198 TCGGTCTAGCTTTACTGGGGCTGAGCATGACCGGTTACATACTTGGTCCGCCTCTCTACT 257 |||| |||||||||||||||||||||||| | |||||||| ||||||||||||||||||| Sbjct 242 TCGGGCTAGCTTTACTGGGGCTGAGCATGGCTGGTTACATTCTTGGTCCGCCTCTCTACT 301 Query 258 GGCATCTCACTGAGGCTTTGGCCGCCGTTTCCACCTCCTCTTGTCCTTCCTGCCCCTGTG 317 |||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| Sbjct 302 GGCATCTCACTGAGGCTTTGGCCGCCGTTTCCGCCTCCTCTTGTCCTTCTTGCCCCTGTG 361 Query 318 AGTGCTCTCCCTATTCCGCTATCACGATTCCCAAAGAACTCAGTAATGCTTCTTACGCCG 377 | |||||| ||||||||||| |||| ||||||||||| |||||||||||||||| || | Sbjct 362 AATGCTCTACCTATTCCGCTGTCACCATTCCCAAAGAGCTCAGTAATGCTTCTTTTGCTG 421 Query 378 ATTGTGCAAAGCACGATCCAGAGGTGAACGAAGACACTGAGAAGAACTATGCTGAACTTC 437 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 422 ATTGTGCAAAGCACGATCCAGAGGTGAACGAAGACACTGAGAAGAACTATGCTGAACTTC 481 Query 438 TAAGCGAAGAACTGAAGCTGCGTGAAGCGGAATCTTTAGAGAAACACAAACGAGCAGACA 497 | | ||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 482 TTACCGAGGAACTGAAGCTGCGTGAAGCAGAATCTTTAGAGAAACACAAACGAGCAGACA 541 Query 498 TGGGGCTTTTAGAGGCCAAAAAAGTAACTTCTTCATATCAAAAGGAAGCAGATAAGTGCA 557 ||||||| || |||||||| || |||||||||||||| |||||||||||||||||||||| Sbjct 542 TGGGGCTATTGGAGGCCAAGAAGGTAACTTCTTCATACCAAAAGGAAGCAGATAAGTGCA 601 Query 558 ACTCAGGTATGGAAACATGCGAAGAAGCTCGGGAAAAAGCAGAATTAGCACTCGCCGAGC 617 |||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 602 ACTCGGGTATGGAAACATGCGAAGAAGCTCGAGAAAAAGCAGAATTAGCACTCGCCGAGC 661 Query 618 AGAAAAAGCTAACATCTAAGTGGGAAGAGAGAGCTCGCCAAAAAGGATGGAGAGAAGGAG 677 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 662 AGAAAAAGCTAACATCTAGGTGGGAAGAGAGAGCTCGCCAAAAAGGATGGAGAGAAGGTT 721 Query 678 CCACCAAGTCAAATGTTAAACCCAAAAGCAATGTTTAGGTTGCTTAGGAAACCCCAAAGA 737 |||||||| ||||||||||| |||||||||||||| ||||||||||||| |||| || || Sbjct 722 CCACCAAGCCAAATGTTAAATCCAAAAGCAATGTTCAGGTTGCTTAGGATACCC-AAGGA 780 Query 738 TCAGCAAAAGGATCTTAGTTACAAACCACTTGTGTAATTGTTTGTGAATTGGATTTTAAC 797 ||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||| Sbjct 781 TCAGCAAAAAGATCTTAGTTACAAACCACTCGTGTAATTGTTTGTGAATTGGATGCTAAC 840 Query 798 AA-A-A-----AACTATTATTATACTTT 818 || | | ||||||||||||||||| Sbjct 841 AATATAGTGTCAACTATTATTATACTTT 868 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 39835678571 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5