BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470499
Length=1305
Score E
Sequences producing significant alignments: (Bits) Value
AT1G05080.1 | Symbols: | F-box/RNI-like/FBD-like domains-conta... 1825 0.0
> AT1G05080.1 | Symbols: | F-box/RNI-like/FBD-like domains-containing
protein | chr1:1459091-1460579 FORWARD LENGTH=1320
Length=1320
Score = 1825 bits (988), Expect = 0.0
Identities = 1224/1332 (92%), Gaps = 39/1332 (3%)
Strand=Plus/Plus
Query 1 ATGGCAGAAGCCAAAATTGAAGAGATCGGTTGTGAAGACAGGATCAGTGCTCTACCGGAA 60
||||| ||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 1 ATGGCGGAAGCCAAAATTGAAGAGATCGGTTGTGAAGACAGGATCAGTGTTTTACCGGAA 60
Query 61 GATGTACTCGTAGAGATATTGGATCTTCTCCCGACAAAAGACGTAGTAGCCACCATGATT 120
||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GATTTACTCGTAGTGATATTGGATCTTCTCCCGACAAAAGACGTAGTAGCCACCATGATT 120
Query 121 CTGTCAAAACGATGGCTGTCGATTTGGACGATGGTAAGGACACTTGAGTATAAAGAAGAC 180
||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| |||
Sbjct 121 CTGTCAAAACGATGGCTCTCGATTTGGACGATGGTAAGGACACTTGAGTATACAGATGAC 180
Query 181 ATGGATGATGAAAGCAAGAAGAGCGTTTGGTGGTTTCTTAACAAATCATTGCAACTCCAC 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 ATGGATGATGAAAGCAAGAAGAGCGTTTGGTGGTTTCTTAACAAATCATTGCAACTCCAC 240
Query 241 AAGTCACCTGTAATAGACAGCTTGTGTATTGAACTTGGTCCACAGTGCCCTACTACTGAT 300
||| | |||||||||||||||||||| || ||||||||||||||||||||||| ||||||
Sbjct 241 AAGGCGCCTGTAATAGACAGCTTGTGCATGGAACTTGGTCCACAGTGCCCTACCACTGAT 300
Query 301 GATGTTGATATCGGAAAGTGGGTTGCAAAAGCTGTTGATTGTTTGGTG-TGGACGCTAAC 359
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 301 GATGTTGATATCGGAAAGTGGGTTGCAAAAGCTGTTGATTGTTTGGTGATG-ACGCTAAC 359
Query 360 AATCAAGCTCCTCTGGTCCGCAGGTCCAACCAGCTTGCCCAAGAGCCTTTACTGTTGCGA 419
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 360 AATCAAGCTCCTCTGGTCCGCAGGTCCAACCAGCTTGCCCAAGAGCCTTTACTCTTGC-A 418
Query 420 CACTCT-TTT-TGAACTGACTCTCTCCGACCAGATTCTCGTGAATGTTCCTTCTTCTTCT 477
| |||| ||| ||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 419 C-CTCTCTTTCTGAACTGACTCTCTCTGACCAGATTCTCGTGAATGTTCCTTCTTC--C- 474
Query 478 TCCGCCTATCTCCCATTCCTTAGC-GATCTCGAACTAATCCGTGTTGTGTATAAAGACGA 536
||||||||||||| ||||| | || |||||||||||| |||||||||||||||||||
Sbjct 475 ---GCCTATCTCCCATCCCTTA-CAGAGCTCGAACTAATCTGTGTTGTGTATAAAGACGA 530
Query 537 GGATTCTCTCGTTACCTTGTTATCGAGCTGCCCTGTTCTTGAGACCTTGTTCGTGAAAAG 596
||||||||| |||| ||| |||||||||||||||||||||||| |||||||||| |||
Sbjct 531 GGATTCTCTTGTTAGCTTCTTATCGAGCTGCCCTGTTCTTGAGTTCTTGTTCGTGCTAAG 590
Query 597 GAAAATAGATGACAATGTGAAAAAGTTTACCATCAAAGTGCCTTCTTTATTGTACTTGTG 656
||||||||||||||||||||||| |||||| |||||||||||||||||||| | ||
Sbjct 591 GAAAATAGATGACAATGTGAAAACGTTTACTGTCAAAGTGCCTTCTTTATTGGAGTTAAC 650
Query 657 GTATATTAATGACT-CGTCTGATGTAGTAGACTATACTGATAGGTGTTTGGTTGTAGATG 715
||||| ||| || | ||||||||||||||| |||| |||||||||||||||||| |||
Sbjct 651 GTATAAGAATCTCTGC-TCTGATGTAGTAGACAATACCGATAGGTGTTTGGTTGTAAATG 709
Query 716 CTCCTGCAGTGAACACCTGTCGAATCACCGATTATTCACTAGACTCTTTCTCCATCGAGG 775
||||||||||||||||||||| |||||| |||||||||||||| ||||||||||||||||
Sbjct 710 CTCCTGCAGTGAACACCTGTCAAATCACTGATTATTCACTAGAATCTTTCTCCATCGAGG 769
Query 776 ATATGCCCTGTCTCCAGGATGCAAATATCAATGTTGAAGAGTCTTATCATCCGGATGACA 835
|||||||||||||||||||||||| |||| |||| || ||| ||||||||||||||||||
Sbjct 770 ATATGCCCTGTCTCCAGGATGCAACTATCGATGTAGATGAGGCTTATCATCCGGATGACA 829
Query 836 AATTTCTAACTTCTTTTTCTTCAGTCTTGTCTCTTC-ATTTGAATTTGTCTGATGCAATG 894
|||||||||| ||||||||||||||||||||||||| | | | |||||||||||||||||
Sbjct 830 AATTTCTAACATCTTTTTCTTCAGTCTTGTCTCTTCGAAT-GCATTTGTCTGATGCAATG 888
Query 895 GTTATGCGTTGTACCAACGTCAACTTCTCTCGACTTATAAAGTTAAGCATATGTCCGTAT 954
|||||||||||||||| | |||||||||||||||| |||||||||||||||| ||| |||
Sbjct 889 GTTATGCGTTGTACCACCATCAACTTCTCTCGACTAATAAAGTTAAGCATATATCCCTAT 948
Query 955 GGACCAGACATGTTGGAGACACTCCTACTTTTACTTAAAAATGCTCCAAAACTAAAAGAG 1014
||||||||||||||||| |||||||||| ||||||| ||||||||||||||||||||||
Sbjct 949 GGACCAGACATGTTGGAAACACTCCTACGTTTACTTGGAAATGCTCCAAAACTAAAAGAG 1008
Query 1015 TTTTTGGTAGATTAT---------A---------A-A--TTTGTCTATCATCCCGAGGAT 1053
||||||||||||||| | | | ||||||||| |||||||||||
Sbjct 1009 TTTTTGGTAGATTATCCCTCCCTTATTGCTTCTCAGAAATTTGTCTATAATCCCGAGGAT 1068
Query 1054 CTCCCATGGTCATGGAAACAGCCGAGTCATGTTCCCGAATGCTTGTCATCACAGCTCGAG 1113
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1069 CTCCCATGGTCATGGAAACAACCGAGTCATGTTCCCGAATGCTTGTCATCACAGCTCGAG 1128
Query 1114 ATATTCGAGTGGAGAGAATATGGGGATAGAATAATAGAGGAAGAATTCTTGACATACGTT 1173
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1129 ATATTCGAGTGGAGAGACTATGGGGATAGAATAATAGAGGAAGAATTCTTGACATACGTT 1188
Query 1174 TTAGCCAACTCTAAGCGTTTAAAAACCGCAACAATCTCCCTGAGGTTAAATCTTGAAGAT 1233
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1189 TTGGCCAACTCTAAGCGTTTAAAAACCGCAACAATCTCCCTGAGGTTAAATCTTGAAGAT 1248
Query 1234 CCAGAGTTGATCATCGAGGAGTTAAAAGATATTCCTAGGGTTTCAACAACATCTCAACTT 1293
|||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |||
Sbjct 1249 CCAGAGTTGATCATCGAGGAAATAAAAGACCTTCCTAGGGTTTCAACAACATCTCACCTT 1308
Query 1294 TTGTTCAAATGA 1305
||||||||||||
Sbjct 1309 TTGTTCAAATGA 1320
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64206497055
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5