BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470502
Length=1276
Score E
Sequences producing significant alignments: (Bits) Value
AT1G05100.1 | Symbols: MAPKKK18 | mitogen-activated protein kin... 1978 0.0
> AT1G05100.1 | Symbols: MAPKKK18 | mitogen-activated protein kinase
kinase kinase 18 | chr1:1469610-1470881 FORWARD LENGTH=1272
Length=1272
Score = 1978 bits (1071), Expect = 0.0
Identities = 1212/1279 (95%), Gaps = 13/1279 (1%)
Strand=Plus/Plus
Query 1 AAACATTCaaaaaaaaaaaaaaaaCATTTCTTTTTTATTACTCTCATCTTTTTTAGTATC 60
||||||||||||||||||||||| ||||| |||||| |||||| |||||||||||||||
Sbjct 1 AAACATTCAAAAAAAAAAAAAAACCATTTTTTTTTTCTTACTCAAATCTTTTTTAGTATC 60
Query 61 ATTCTCCAAATGAATTGGACTAGAGGAAAAACTATAGGCCGTGGCTCAACAGCCACCGTT 120
||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct 61 ATTCTCCAAATGAATTGGACTAGAGGAAAAACTTTAGGCCGTGGCTCAACGGCCACCGTT 120
Query 121 TCCGCCGCCACCTGTTACAAATCCGGCGAAACAATCGCCGTTAAATCCGCCGAGTTTCAC 180
||||||||||| ||| || |||||||||||||| ||||||| ||||||||||||||||||
Sbjct 121 TCCGCCGCCACTTGTCACGAATCCGGCGAAACACTCGCCGTAAAATCCGCCGAGTTTCAC 180
Query 181 CGGTCGGAGTTTTTGCAAAGAGAAGCCAAGATTCTCTCCTCATTGAATTCTCCGTACGTC 240
||||||||||| |||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 181 CGGTCGGAGTTCTTGCAAAGAGAAGCCAAGATTCTCTCCTCATTAAACTCTCCGTACGTC 240
Query 241 ATCGGATACAGAGGATGCGAAATTACGAGAGAG-CCTGTCTACAACAACGGAGAAGCTAC 299
||||||||||||||||||||||||||||||||| ||| || |||||||||||||||||||
Sbjct 241 ATCGGATACAGAGGATGCGAAATTACGAGAGAGCCCT-TCCACAACAACGGAGAAGCTAC 299
Query 300 GACTTACAATCTTCTCATGGAGTACGCGCCGTACGGAACGTTGACCGACGTAGCGATCAA 359
|||||||| |||||| |||||||||||||||||||||||||||||||||||||||| |||
Sbjct 300 GACTTACAGTCTTCTTATGGAGTACGCGCCGTACGGAACGTTGACCGACGTAGCGACCAA 359
Query 360 GAACGGCGGTTTCATCGACGAGGCTCGGGTCGTGAAGTACACGCGCCAGATACTTCTTGG 419
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 GAACGGCGGCTTCATTGACGAGGCTCGGGTCGTGAAGTACACGCGCCAGATACTTCTTGG 419
Query 420 TTTGGAGTACATTCATAACTCCAAGGGAATTGCGCATTGCGACATTAAGGGAAGCAACGT 479
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 420 GTTGGAGTACATTCATAACTCAAAGGGAATTGCGCATTGCGACATTAAGGGAAGCAACGT 479
Query 480 GTTGATCGGAGAGAACGGAGAAGCCAAGATCGCTGATTTCGGATGTGCGAAATGGGTTGA 539
|||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 480 GTTGGTCGGAGAGAACGGAGAAGCCAAGATCGCTGATTTCGGGTGTGCGAAATGGGTTGA 539
Query 540 ACCGGAATTAACCGAACCGGTTAGAGGAACGCCGGTGTTTATGGCTCCGGAAGTGGCGCG 599
||||||| ||||||||||||||||||||||||||| ||| |||||||| |||| ||||||
Sbjct 540 ACCGGAAATAACCGAACCGGTTAGAGGAACGCCGGCGTTCATGGCTCCAGAAGCGGCGCG 599
Query 600 TGGAGAAAGACAAGGGAAAGAGAGTGATATTTGGGCGGTGGGTTGTACGGTGATAGAGAT 659
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 600 TGGAGAGAGACAAGGGAAAGAGAGTGATATATGGGCGGTGGGTTGTACGGTGATAGAGAT 659
Query 660 GGTTACCGGGTCCCCGCCGTGGATTGGAGCGGATTCGACCGATCCGGTTTCGGTTCTTTA 719
|||||||||||| | |||||||||||| ||||||| ||||| |||||||||||||||||
Sbjct 660 GGTTACCGGGTCTCAGCCGTGGATTGGGGCGGATTTTACCGACCCGGTTTCGGTTCTTTA 719
Query 720 CCGGGTCGGATATTTAGGTGAGTCACCTGAGCTGCCTTGCTCGCTTACGGAACAAGCAAA 779
||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 720 CCGGGTCGGATATTTAGGTGAGTTACCAGAGCTGCCTTGCTCGCTTACGGAACAAGCAAA 779
Query 780 GGATTTTTTAGGAAAGTGTTTGAAAAAAGAAGCGAAGGAGAGATGGACAGCGAGTCAACT 839
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 780 GGATTTTTTAGGAAAGTGTTTGAAAAAAGAAGCGACGGAGAGATGGACAGCGAGTCAACT 839
Query 840 ACTAAACCATCCCTTCTT-GTTGAATAAAGAACCGGAATTGGTAACCGGTTTGGTTACGA 898
|||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct 840 ACTAAACCATCCGTTCTTGGTT-AATAAAGAACCGGAATTGGTAACCGGTTTGGTTACGA 898
Query 899 ACTCACCGACAAGTGTGACGGATCAAATGTTCTGGAGATCAGTGGAAGAGGAGGTGTCAG 958
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 ACTCACCGACAAGTGTGACGGATCAAATGTTCTGGAGATCAGTGGAAGAGGAGGTGTCAG 958
Query 959 AGGACCGTCCAAGCTGGTGGGAATGTCACGAGGATGAGAGAATTGGAGTGCTAAGCTGGA 1018
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 AGGACCGTTCAAGCTGGTGGGAATGTCACGAGGATGAGAGAATTGGAGTGCTAAGCTGGA 1018
Query 1019 TTGGTCATGTTGTGGTGGAGTCCACATGGGACTTGGACGGTGAGGATTGGATCACGGTTC 1078
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 TTGGTCATGTTGTGGTGGAGTCCACATGGGACTTGGACGGTGAGGATTGGATCACGGTTC 1078
Query 1079 GACGGAATAATGATTAGTCGGTTCACATGAGAGGAGCGTTGATTATTCGATTCAATTAGT 1138
|||||||| | | |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1079 GACGGAAT--T-A---GTCGGTTCACATGA-AGGAGCGTTGATTATTCGATTCAATTAGT 1131
Query 1139 GA-GAATATTGTTTTAGTCTAGTAGAAGCTGAGGTTTAGAGAAATTCATGTACATTTGCT 1197
|| || |||||||||||| ||||||||| ||||||||||||| ||||||||||||| ||
Sbjct 1132 GAAGA-TATTGTTTTAGTTTAGTAGAAGTTGAGGTTTAGAGATTTTCATGTACATTTCCT 1190
Query 1198 AATTCATCATTTTTTATCCCCACAAATCCAAATTTTGTTATCCATTGATAATATGTTACA 1257
||||||||||||||||||||||||||||||| ||||||||| ||||||| |||||||| |
Sbjct 1191 AATTCATCATTTTTTATCCCCACAAATCCAATTTTTGTTATTCATTGATTATATGTTATA 1250
Query 1258 ATATAATTCATGATTGATT 1276
|||| | ||||||||||||
Sbjct 1251 ATATGAGTCATGATTGATT 1269
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62750681250
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5