BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470503
Length=2675
Score E
Sequences producing significant alignments: (Bits) Value
AT1G05120.1 | Symbols: | Helicase protein with RING/U-box doma... 3951 0.0
AT1G02670.1 | Symbols: | P-loop containing nucleoside triphosp... 630 2e-179
> AT1G05120.1 | Symbols: | Helicase protein with RING/U-box domain
| chr1:1471406-1476078 REVERSE LENGTH=2731
Length=2731
Score = 3951 bits (2139), Expect = 0.0
Identities = 2522/2698 (93%), Gaps = 61/2698 (2%)
Strand=Plus/Plus
Query 1 GGACAGAGATGGAGCTTCGGTCCCGCAATAAGGCGATTCCTCCATCGATTGAAGTAGTTG 60
||||||||||||||||||||||||||||||||||||||| |||||||| || | |||||
Sbjct 4 GGACAGAGATGGAGCTTCGGTCCCGCAATAAGGCGATTCGTCCATCGACTG-A--AGTTG 60
Query 61 TGGATCTCGAGGAAGAAACTGGTACCAACTCTAATGACGAACCTTATGCTATATCTTCAG 120
||||||||||||||| |||||||| |||| || |||| ||||||||||||||||||||
Sbjct 61 TGGATCTCGAGGAAGGAACTGGTATCAACCCTGATGAAGAACCTTATGCTATATCTTC-- 118
Query 121 ATGATGACGATTCAATCGGCTCTGATTTTCAAGGTGACgaggaggaggaggaggtggagg 180
| ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 119 A-GATGACGATTCAATCGGCTCTGAATTTCAAGGTGACGAGGAGGAGGAGGA---GGAGT 174
Query 181 tcgaggaggTCGATGCTAATGATGATATACCAAATCCTGTACCTGTTCTTGCCCCTGCGC 240
| |||||||| | ||||||||||||| |||||||||||||| | | || |
Sbjct 175 TAGAGGAGGTTGTTGCTAATGATGATTTACCAAATCCTGTA-C----C-TG----T---- 220
Query 241 CTTTGGCAATTGTAAACTTACcaagagcaagcaagaaaagaaaaaaagcttgtgcaagca 300
|||||||||||||||| |||||||||||||||||||||| |||||| | || | ||
Sbjct 221 -TTTGGCAATTGTAAACCTACCAAGAGCAAGCAAGAAAAGGAAAAAA-C--CTG-ATGC- 274
Query 301 aagagaaagagaaagaagTGCTAATGTGGGAGATTTGGGAAAAAGAGCAGAATAGATGGA 360
| | |||||||||| ||||||| ||||||||| ||||||||||||||||||||| ||||
Sbjct 275 ACG-CAAAGAGAAAGTAGTGCTATTGTGGGAGACTTGGGAAAAAGAGCAGAATAGCTGGA 333
Query 361 TTGATGAACATATGGCAGAGGATGTTGATTTGGATCAGCAGAATGCTGTGATTACCGAAA 420
|||||||||||||| |||||||||||||||| |||||||| |||||||||||| | ||||
Sbjct 334 TTGATGAACATATGTCAGAGGATGTTGATTTAGATCAGCACAATGCTGTGATTGCTGAAA 393
Query 421 CTGCTGAGCCGCCTCCAGATTTGATTATGCCGCTATTAAGGTACCAAAAGGAATTTTTGG 480
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 394 CTGCTGAGCCGCCTTCAGATTTGATTATGCCGCTATTAAGGTACCAAAAGGAATTTTTGG 453
Query 481 CTTGGGCATCAAAACAGGAACAGTCAGTCGCAGGAGGGATTCTCGCGGATGAGATGGGAA 540
| |||||| ||||||||||||| || || |||||||||||||||||||||||||||||||
Sbjct 454 CCTGGGCAACAAAACAGGAACAATCTGTTGCAGGAGGGATTCTCGCGGATGAGATGGGAA 513
Query 541 TGGGAAAAACAATACAAGCCATCTCTCTTGTTCTTGCCAGACGAGAAGTTGACAGGGCAC 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 514 TGGGAAAAACAATACAAGCCATCTCTCTTGTTCTTGCCAGACGAGAAGTTGACAGGGCAC 573
Query 601 AGTTTGGGGAAGCAGTGGGTTGTACCCTGGTTCTTTGCCCTCTTGTTGCTGTTTCTCAGT 660
||||||||||||| | ||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 574 AGTTTGGGGAAGCTGCGGGTTGTACTCTGGTTCTTTGTCCTCTTGTTGCTGTTTCTCAGT 633
Query 661 GGTTAAATGAGATTGCTCGGTTTACATCCCCGGGAAGCACTAAGGTCCTTGTATACCATG 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 634 GGTTAAATGAGATTGCTCGGTTTACATCCCCGGGAAGCACTAAGGTCCTTGTATACCATG 693
Query 721 GGGCGAAGAGAGAGAAGAATATTAAAGAGTTTATGAACTACGACTTTGTTTTGACAACAT 780
|||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 694 GGGCAAAGAGAGCGAAGAATATTAAAGAGTTTATGAACTACGACTTTGTTTTGACAACAT 753
Query 781 ATTCCACAGTTGAGAGTGAATATAGGAGATACATTATGCCGCCCAGGGAGCAATGTGCAT 840
||||||| ||||||||||||||||||||| |||| |||||| | | || |||||||||||
Sbjct 754 ATTCCACTGTTGAGAGTGAATATAGGAGAAACATAATGCCGTCGAAGGTGCAATGTGCAT 813
Query 841 ATTGCACCAAGTCATTTTACCCGAAGAAGCTTTTGATCCACCAGCGATATTTTTGTGGAC 900
|||||| ||||||||||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct 814 ATTGCAGCAAGTCATTTTACCCGAAGAAGCTTGTGATCCACCTGCGATATTTTTGTGGAC 873
Query 901 CTTCGGCTGTCAAAACAGCAAAACAATCTAAGCAGAAAAGTAAGAAGTCTACAGCTTCAT 960
|||||||||||||||| ||||||||||||||||||||||| |||||| || ||| |||||
Sbjct 874 CTTCGGCTGTCAAAACGGCAAAACAATCTAAGCAGAAAAGGAAGAAGACTTCAGATTCAT 933
Query 961 CCTCACAGCAAGGCAAGGAGGCTGATGCAGGAGAGGATAACAAAATGAAG-AATACTAAG 1019
|||||||||||||||||||||||||||||||||||||||| ||| | ||| ||| |||||
Sbjct 934 CCTCACAGCAAGGCAAGGAGGCTGATGCAGGAGAGGATAAGAAATTAAAGAAAT-CTAAG 992
Query 1020 AAGAAGACCAAACAAACAGTGGAAGAAGATCAGTTAGGTTCAGATGACAGAGAGAAGTCT 1079
|||||||||||||||||||| ||| |||||||||||||||||||||||| ||||||||||
Sbjct 993 AAGAAGACCAAACAAACAGTAGAAAAAGATCAGTTAGGTTCAGATGACAAAGAGAAGTCT 1052
Query 1080 CTTTTGCACTCTGTTAAGTGGAATCGGATAATTTTGGATGAGGCTCATTACATCAAAGAA 1139
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 1053 CTTTTGCACTCTGTTAAGTGGAATCGGATCATCTTGGATGAGGCTCATTACATCAAAGAA 1112
Query 1140 AGACGTAGCAACACGGCAAGAGCTGTTTTTGCTTTGGAGGCTACCTATAGATGGGCTCTG 1199
||||||||||| || |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1113 AGACGTAGCAATACTGCAAGAGCTGTTTTTGCTTTGGAGGCTACCTATAGATGGGCTTTG 1172
Query 1200 AGTGGCACTCCTCTCCAAAATCGTGTTGGAGAGCTTTACTCCCTGATCCGCTTCTTACAA 1259
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 1173 AGTGGCACTCCTCTCCAAAATCGTGTTGGAGAGCTTTACTCACTGATCCGCTTCTTGCAA 1232
Query 1260 ATTCGCCCATACTCATATTACTTTTGCAAGGGTTGTGACTGTAGAATTCTTGATTACGCT 1319
|||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 1233 ATTCGCCCATACTCGTATTACTTTTGCAAGGATTGTGACTGTAGAATTCTTGATTACGTT 1292
Query 1320 GCGCATCAAAGCTGCCCTCACTGTCCTCATAATTTAGTTCGACATTTCTGTTGGTGGAAC 1379
|| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1293 GCTCATCAAAGCTGCCCTCACTGTCCTCATAATGCAGTTCGACATTTCTGTTGGTGGAAC 1352
Query 1380 AAGTATGTGGCCAAGCCAATAACAGTAAATGGAAGCTTCGGACTAGGAAAGAGAGCCATG 1439
||||||||||||||||||||||||||| |||||||||| ||||| ||||| |||||||||
Sbjct 1353 AAGTATGTGGCCAAGCCAATAACAGTATATGGAAGCTTTGGACTGGGAAAAAGAGCCATG 1412
Query 1440 ATATTGCTTAAACACAAAGTTCTGAAGGACATTCTTTTAAGACGTACTAAATTGGGCCGG 1499
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1413 ATATTGCTTAAACACAAAGTTCTGAAGGACATCCTTTTAAGACGTACTAAATTGGGCCGG 1472
Query 1500 GCAGCTGATCTTGCTCTTCCTCCTAGAATTATCTCTTTGAGGCGCGATACACTAGATGTA 1559
||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct 1473 GCAGCTGATCTTGCTCTTCCTCCTAGAATTATCACTTTGAGGCGGGATACACTAGATGTA 1532
Query 1560 AAGGAGTCTGATTACTATGAATCACTATACAAAAACAGCCAGGCAGAATTTAATACGTAT 1619
||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1533 AAGGAGTTTGATTACTATGAATCACTATACAAAAACAGCCAGGCGGAATTTAATACGTAT 1592
Query 1620 ATTGAGGCTGGTACATTGATGCATAACTACGCACATATATTTGATCTTCTCACCCGTCTG 1679
||||||||||| ||||| ||| ||||||| |||||||||||||||||||||||||| |||
Sbjct 1593 ATTGAGGCTGGGACATTAATGAATAACTATGCACATATATTTGATCTTCTCACCCGCCTG 1652
Query 1680 AGA-ATGGCTGTTGATCATCCATACCTTGTGGTGTATTCCAATTCTAGTGGCGCTAATGC 1738
||| | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1653 AGACA-GGCCGTTGATCATCCATACCTTGTGGTGTATTCCAATTCTAGTGGCGCTAATGC 1711
Query 1739 TAACTTGGTTGATGAGAACAAAACTGAGCAAGAATGTGGTCTCTGCCACGACCCGGCCGA 1798
||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||
Sbjct 1712 TAACTTGGTTGATGAGAACAAAAGTGAGCAAGAATGTGGTCTCTGCCACGATCCGGCCGA 1771
Query 1799 GGACTACATTGTGACTACTTGTGCACATGTGTTCTGTAAAGCTTGTTTGATTGGTTTCTC 1858
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1772 GGACTACGTTGTGACTTCTTGTGCACATGTGTTCTGTAAAGCTTGTTTGATTGGTTTCTC 1831
Query 1859 TACGTCCCTGGGAAAAGTCACCTGCCCGACATGCTCGAAACTACTGACTGTGGATTGGAC 1918
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1832 CGCGTCCCTGGGAAAAGTCACCTGCCCGACATGCTCGAAACTACTGACTGTGGATTGGAC 1891
Query 1919 TACCAAAGCTGACACAGAGCATAAGGCAAGCAAGACAACACTTAAAGGATTTAGAGCCTC 1978
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1892 TACCAAAGCTGACACAGAGCATAAGGCGAGCAAGACAACACTTAAAGGATTTAGAGCCTC 1951
Query 1979 AAGCATTTTAAATCGCATAAAGCTTGATGATTTTCAGACAAGTACAAAGATTGAGGCTTT 2038
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1952 AAGCATTTTAAATCGTATAAAGCTTGATGATTTTCAGACAAGTACAAAGATTGAGGCTTT 2011
Query 2039 GAGGGAAGAAATTAGGTTCATGGTTGAAAGAGATGGGTCTGCCAAAGCAATAGTTTTCAG 2098
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2012 GAGAGAAGAAATTAGGTTCATGGTTGAAAGAGATGGGTCTGCCAAAGCAATAGTTTTCAG 2071
Query 2099 CCAGTTCACATCATTTTTGGACATTATAAATTATACCCTTGGGAAGTGTGGGGTTAGTTG 2158
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2072 CCAGTTCACATCATTTTTGGACCTTATAAATTATACCCTTGGGAAGTGTGGGGTTAGTTG 2131
Query 2159 TGTTCAACTGGTGGGAAGCATGACCATGGCAGCTAGAGATACTGCTATCAACAAATTCAA 2218
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2132 TGTTCAACTGGTGGGAAGCATGACCATGGCAGCTAGAGATACTGCCATCAACAAATTCAA 2191
Query 2219 GGAAGACCCAGATTGCAGAGTTTTCTTAATGAGCTTGAAAGCCGGAGGGGTTGCTCTTAA 2278
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2192 AGAAGACCCAGATTGCAGAGTTTTCTTAATGAGCTTGAAAGCCGGAGGGGTTGCTCTTAA 2251
Query 2279 TTTAACTGTTGCTTCACATGTTTTTATGATGGACCCGTGGTGGAACCCAGCGGTTGAGAG 2338
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2252 TTTAACTGTTGCTTCACATGTTTTTATGATGGACCCGTGGTGGAACCCAGCGGTTGAGAG 2311
Query 2339 GCAAGCACAAGACAGAATTCATAGGATCGGACAGTACAAGCCAATCAGGGTTGTGAGATT 2398
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2312 GCAAGCACAAGACAGAATTCATAGGATCGGACAGTACAAGCCAATCAGGGTTGTGAGATT 2371
Query 2399 CATTATAGAGAACACAGTGGAGGAAAGGATTCTAAGGCTTCAGCAA-AAGAAGGAACTTG 2457
||| ||||||||||||||||||||||||||| ||||||||||| || |||||||||||||
Sbjct 2372 CATAATAGAGAACACAGTGGAGGAAAGGATTTTAAGGCTTCAG-AAGAAGAAGGAACTTG 2430
Query 2458 TGTTTGAAGGGACGGTTGGTGGCTCTCAGGAGGCTATAGGAAGGCTGACCGAGGAAGATA 2517
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2431 TGTTTGAAGGGACGGTTGGTGGCTCTCAGGAGGCTATAGGAAAGCTGACCGAGGAAGATA 2490
Query 2518 TGAGGTTTCT-GTTTACAACATAACTT------AA-A-A------CGCTTTTGTATGGTC 2562
||||||| || |||||||||||||||| || | | |||||||||||| |
Sbjct 2491 TGAGGTT-CTTGTTTACAACATAACTTTTTTCTAACAGATGAAAACGCTTTTGTATGACC 2549
Query 2563 ATACAA-ATCTCGTCTGGGTGTAGAAGTA-GAATGGTAATGGTATGTGTGTAACTTAAGC 2620
|| || |||| |||| ||||||| |||| | |||||||||||||||| || |||||||
Sbjct 2550 ATG-AAGATCTGGTCTCGGTGTAGTAGTATGG-TGGTAATGGTATGTGT-TA-CTTAAGC 2605
Query 2621 CCGTTTTTCACTTAT-A--TCCAGAGATTTTTTGATGATGTTGACACATCTATGATTT 2675
|||||||| |||| | | | ||||||||||||||||||| |||||||||||||||||
Sbjct 2606 CCGTTTTTAACTTCTTACATTCAGAGATTTTTTGATGATGATGACACATCTATGATTT 2663
> AT1G02670.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr1:576046-580299 FORWARD
LENGTH=2037
Length=2037
Score = 630 bits (341), Expect = 2e-179
Identities = 491/562 (87%), Gaps = 16/562 (3%)
Strand=Plus/Plus
Query 1938 CATAAGGCAAGCAAGACAACA-CTTAAAGGATTTAGAGCCTCAAGCATTTTAAATCGCAT 1996
||| ||||||||||||||| | |||||||||||||||||||| |||||||||||||| ||
Sbjct 1435 CATCAGGCAAGCAAGACAA-AGCTTAAAGGATTTAGAGCCTCTAGCATTTTAAATCGGAT 1493
Query 1997 AAAGCTTGATGATTTTCAGACAAGTACAAAGATTGAGGCTTTGAGGGAAGAAATTAGGTT 2056
||| || ||||||||| | |||||||||||||||||||||||||| |||||||| |||||
Sbjct 1494 AAACCTCGATGATTTTAAAACAAGTACAAAGATTGAGGCTTTGAGAGAAGAAATCAGGTT 1553
Query 2057 CATGGTTGAAAGAGATGGGTCTGCCAAAGCAATAGTTTTCAGCCAGTTCACATCATTTTT 2116
|||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 1554 CATGGTTGAAAGAGATTGGTCTGCCAAAGCAATAGTATTCAGCCAGTTCACATCATTCTT 1613
Query 2117 GGACATTATAAATTATAC-CCTT-GGGAAGTGTGGGGTTAGTTGTGTTCAACTGGTGGGA 2174
|||| | || || | ||| |||| ||||||| ||||||||| ||||||||||||||||||
Sbjct 1614 GGACCTGAT-AAGT-TACGCCTTGGGGAAGTCTGGGGTTAGCTGTGTTCAACTGGTGGGA 1671
Query 2175 AGCATGACCATGGCAGCTAGAGATACTGCTA-TCAACAAA-TTCAAGGAAGACCCAGATT 2232
|||||| ||| |||||||| |||| |||| | |||| ||| || || ||||| |||||||
Sbjct 1672 AGCATGTCCAAGGCAGCTAAAGATGCTGC-ACTCAA-AAATTTTAAAGAAGAGCCAGATT 1729
Query 2233 GCAGAGTTTTCTTAATGAGCTTGAAAGCCGGAGGGGTTGCTCTTAATTTAACTGTTGCTT 2292
|||||||||| |||||||||||| |||| |||||||||||||| ||| |||| | ||||
Sbjct 1730 GCAGAGTTTTATTAATGAGCTTGCAAGCTGGAGGGGTTGCTCTAAATCTAACAGCCGCTT 1789
Query 2293 CACATGTTTTTATGATGGACCCGTGGTGGAACCCAGCGGTTGAGAGGCAAGCACAAGACA 2352
| ||||| || |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1790 CGCATGTGTTCATGATGGACCCGTGGTGGAACCCAGCGGTTGAGAGGCAAGCACAGGACA 1849
Query 2353 GAATTCATAGGATCGGACAGTACAAGCCAATCAGGGTTGTGAGATTCATTATAGAGAACA 2412
|||| |||||||||||||||| |||||| |||||||||| |||||||| || ||||| |
Sbjct 1850 GAATACATAGGATCGGACAGTGCAAGCCTGTCAGGGTTGTAAGATTCATAATGGAGAAAA 1909
Query 2413 CAGTGGAGGAAAGGATTCTAAGGCTTCAGCAA-AAGAAGGAAC-TTGTGTTTGAAGGGAC 2470
|||| ||||||| ||| |||| |||||| || ||||||||| || |||||||| | ||
Sbjct 1910 CAGTAGAGGAAAAGATACTAACGCTTCAA-AAGAAGAAGGAAGATT-TGTTTGAAAGTAC 1967
Query 2471 GGTT-GGTGGCTCTCAGGAGGC 2491
| || |||| |||| | |||||
Sbjct 1968 G-TTAGGTGACTCTGAAGAGGC 1988
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 132842065064
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5