BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470504
Length=1426
Score E
Sequences producing significant alignments: (Bits) Value
AT1G05140.1 | Symbols: | Peptidase M50 family protein | chr1:1... 2161 0.0
> AT1G05140.1 | Symbols: | Peptidase M50 family protein | chr1:1482548-1484056
FORWARD LENGTH=1509
Length=1509
Score = 2161 bits (1170), Expect = 0.0
Identities = 1355/1442 (94%), Gaps = 21/1442 (1%)
Strand=Plus/Plus
Query 1 TCAATCCTATCCACAGATCGTTAATGTTTTTTCGTTATCTGCTCTGTTTTTCAATGGCTT 60
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 23 TCAATCCTATCCACAGATGGTTAATGTTTTTTCTTTATCTGCTCTGTTTTTCAATGGCTT 82
Query 61 CTATAGTTTCTCTTCTCCG--CACTCTAAACTCTCAAAACCTCACGAAATCATGCTATTA 118
|||||||| |||||||||| | |||| |||| ||||||||||||||||||||||| |||
Sbjct 83 CTATAGTTCCTCTTCTCCGTACTCTCTTAACTTTCAAAACCTCACGAAATCATGCTTTTA 142
Query 119 AACATTTGTTCTTCTCCAATTTCTCATCGAAATCCTC-TCTTCCTCTCT-ACTTTCAACA 176
||||||| ||||||||||||||||||||||| ||||| | ||||||||| | ||| ||||
Sbjct 143 AACATTTCTTCTTCTCCAATTTCTCATCGAATTCCTCAT-TTCCTCTCTGA-TTTTAACA 200
Query 177 ATCCCACTTCAAATTTTCCTCCAAAAT-C---TCATAT-TTCC---A-CCAATCTCTCCA 227
|||||||||||||||| ||||| |||| | | || | || | | ||||||||||
Sbjct 201 ATCCCACTTCAAATTTCCCTCCGAAATCCAAAACCCATCTCCCAAAATCTAATCTCTCCA 260
Query 228 CTCTATCGAATCA-AACCTTCTACGGCACCAAGAACAGAGCTTTACT-CAGAAACAAGAG 285
|| ||||||| || | || ||||||||||||||||||||||||| || | |||||||||
Sbjct 261 CTTTATCGAACCATAGCC-TCTACGGCACCAAGAACAGAGCTTT-CTATAAAAACAAGAG 318
Query 286 ATACCCATATAACAGAACACAAGCTCTCGCTGGATTCGATTTCGGAAGTTTCGAATCAGT 345
| |||| |||||||||||||||||||||| | ||||||||||||||||| ||||||||||
Sbjct 319 AAACCCTTATAACAGAACACAAGCTCTCGGTCGATTCGATTTCGGAAGTCTCGAATCAGT 378
Query 346 TCTCGAAGCTTCCGCTGTTCTCACTGCGATCATCGTCGTCCACGAGACCGGTCACTTCTT 405
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 379 TCTCGAAGCTTCCGCTGTTCTCACTGCGATCATCGTCGTACACGAGACCGGTCACTTTTT 438
Query 406 AGCTGCTTCTCTTCAAGGTATCCATGTGAGTAAATTCGCGATAGGTTTTGGTCCGATTCT 465
||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct 439 AGCTGCTTCTCTTCAAGGTATCCGTGTGAGTAAATTCGCGATAGGGTTTGGTCCGATTCT 498
Query 466 AGCTAAATTCAATTCCAACAATGTCGAATACTCTCTTAGGGCTTTTCCTTTAGGTGGATT 525
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 499 AGCTAAATTCAATTCCAACAATGTCGAATACTCTCTTAGGGCCTTTCCATTAGGTGGATT 558
Query 526 TGTTGGATTCCCTGATAACGATCCCGACAGTGGA-ATCCCTTTAGACGACAAAAATCTTC 584
|||||||||||||||||| |||||||||||| || |||||| ||||||||| ||||||||
Sbjct 559 TGTTGGATTCCCTGATAATGATCCCGACAGT-GATATCCCTGTAGACGACAGAAATCTTC 617
Query 585 TCAAGAATCGACCGATTTTGGATAGAGTGATTGTTGTTTCAGCTGGAATTGTCGCTAACG 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 618 TCAAGAATCGACCGATTTTGGATAGAGTGATTGTTGTTTCAGCTGGAATTGTCGCTAACG 677
Query 645 TCATCTTCGCTTACGCTATAATCTTTACTCAAGTGGTATCTGTTGGATTACCAGTTCAAG 704
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 678 TTATCTTCGCTTACGCTATAATCTTTACTCAAGTGGTATCTGTTGGATTACCAGTTCAAG 737
Query 705 AATCGTTTCCTGGAGTTCTTGTTCCTGATGTTAAATCTTTCTCTGCTGCTTCTCGTGATG 764
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 738 AATCTTTTCCTGGAGTTCTTGTTCCTGATGTTAAGTCTTTCTCTGCTGCTTCTCGTGATG 797
Query 765 GATTGCTTCCGGGAGATGTTATCTTAGCCGTTGATGGTACTGAGCTATCTAATTCCGGTT 824
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 798 GATTGCTTCCGGGAGATGTTATCTTAGCCGTTGATGGTACTGAGCTATCTAATTCCGGTT 857
Query 825 CTGATTCCGTTTCTAAAGTTGTTAATGTCGTTAAGAGGAATCCAGAGCACAATGTGTTGC 884
||||||| ||||||||||||||| |||| || ||||||||||| ||||||||||| ||||
Sbjct 858 CTGATTCGGTTTCTAAAGTTGTTGATGTTGTGAAGAGGAATCCGGAGCACAATGTCTTGC 917
Query 885 TCAGGATCGAAAGAGGGAAGGAGAATTTCGAAATCCGGATCACGCCGGATAAGAGTTTCG 944
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 918 TCAGGATCGAAAGAGGGAAGGAGAGTTTCGAAATCCGGATCACGCCGGATAAGAGTTTCG 977
Query 945 ATGGAACGGGGAAAATCGGTGTTCAGTTATCACCGAATGTTAGATTCTCTAAGGTGAGAC 1004
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 978 ATGGAACGGGGAAAATCGGTGTTCAGTTATCACCGAATGTTAGATTCGGTAAGGTGAGAC 1037
Query 1005 CGAAGAACATACCGGAAACTCTTAGTTTCGCCGGGAGAGAGTTCTTTGGGCTCTCTTACA 1064
|||||||||||||||||||| ||||||||||||| ||||| |||||||||||||||||||
Sbjct 1038 CGAAGAACATACCGGAAACTTTTAGTTTCGCCGGTAGAGAATTCTTTGGGCTCTCTTACA 1097
Query 1065 ATGTTTTGGACAGTTTGAAACAAACTTTCTTGAACTTCTCTCAAACCGCTAGTAAAGTCG 1124
|||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1098 ATGTATTGGATAGTTTGAAACAGACTTTCTTGAACTTCTCTCAAACCGCTAGTAAAGTCG 1157
Query 1125 CTGGTCCCGTGGCGATCATTGCGGTTGGAGCTGAAGTGGCGAGATCAAACACGGACGGGC 1184
||||||| |||||||| |||||||||||||| ||||| |||||||||||| |||||||||
Sbjct 1158 CTGGTCCAGTGGCGATTATTGCGGTTGGAGCAGAAGTAGCGAGATCAAACGCGGACGGGC 1217
Query 1185 TATACCAGTTTGCAGCATTGCTGAATCTAAACCTTGCGGTGATCAATCTGTTGCCTTTAC 1244
| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1218 TTTACCAGTTTGCAGCATTGCTGAATCTAAACCTTGCTGTGATCAATCTGTTGCCTTTAC 1277
Query 1245 CGGCTCTTGATGGTGGAACTTTGGCTCTGATCTTATTGGAAGCGGTTCGAGGCGGGAGGA 1304
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1278 CGGCTCTCGATGGTGGAACTTTGGCTCTGATCTTATTGGAAGCGGTTCGAGGCGGGAGGA 1337
Query 1305 AATTACCGTTAGAGGTGGAACAAGGGATTATGTCGTCTGGAATCATGCTTGTGTTATTTC 1364
||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||
Sbjct 1338 AATTACCGTTAGAGGTGGAGCAAGGGATTATGTCTTCTGGAATCATGCTTGTATTATTTC 1397
Query 1365 TCGGTTTATTTCTCATCGTCAAGGACACACTTAATCTTGATTTCATCAAAGAAATGTTGT 1424
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1398 TCGGTTTATTTCTCATCGTAAAGGACACACTTAATCTTGATTTCATCAAAGAAATGTTGT 1457
Query 1425 AA 1426
||
Sbjct 1458 AA 1459
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70280763000
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5