BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg470515

Length=562
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G05205.1 | Symbols:  | unknown protein; Has 44 Blast hits to...   808    0.0  


> AT1G05205.1 | Symbols:  | unknown protein; Has 44 Blast hits 
to 44 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa 
- 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes 
- 0 (source: NCBI BLink). | chr1:1509103-1510281 REVERSE 
LENGTH=557
Length=557

 Score =  808 bits (437),  Expect = 0.0
 Identities = 523/563 (93%), Gaps = 11/563 (2%)
 Strand=Plus/Plus

Query  1    TTGAGATTTCAGCAGCAGCAAGAGAAAGATGAGCGAGACGAGACCAGTGCCGAGGAGAGA  60
            ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  5    TTGAGATTTCACCAGGAGCAAGAGAAAGATGAGCGAGACGAGACCAGTGCCGAGGAGAGA  64

Query  61   GAGTCCATGGGGGTTACCGGAAGGCCACCGTGAGCCCAAAGCTCACCGCTGCAACGATCG  120
            |||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct  65   GAGTCCATGGGGTTTACCGGAAGGTCACCGTGAGCCCAAAGCTCACCGCTGCAACGATCG  124

Query  121  TGTCGAGGACGTTGTCCAGGCGTTTTTCGAGGGAAACCCATTCAAGACAGTTCCAGGACC  180
            ||| || |||||| |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct  125  TGTTGAAGACGTTATCCAGGCGTTATTCGAGGGAAACCCATTCAAGACAGTTCCAGGACC  184

Query  181  TTTCAAACTCTTCTACAGATGCATGCGTTCTAAGCCAGGAGAGGAACCAACAGAGCCATT  240
            |||||||||||||||| |||| ||||| ||||||||||||||||| ||||||||||||||
Sbjct  185  TTTCAAACTCTTCTACCGATGTATGCGCTCTAAGCCAGGAGAGGAGCCAACAGAGCCATT  244

Query  241  CAAATACCTCGATCTGGAACCTCCAAAGAGGGAAGTTAAACTTGAAGAAGCAAAGCTTGA  300
            |||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct  245  CAAATACCTCGACCTGGAACCTCCAAAGAGAGAAGTTAAACTTGAAGAAGCAAAGCTTGA  304

Query  301  GTAAAGTGATATTCACTCCCTTTTTTATTCTTGCAAACTTTTTAGCCGAGCATGTAAGCG  360
            |||||||||||||||||||||||||||||| |||| |||||||||| |||| ||||||||
Sbjct  305  GTAAAGTGATATTCACTCCCTTTTTTATTCCTGCATACTTTTTAGCTGAGCGTGTAAGCG  364

Query  361  CCATGACTGTGATTTTAAGTTTACCTTCAACT-TGTGTCAACAACATCTTATTTTGTCAT  419
            |||| ||||||||||||||||||||||||| | |||||||||||||||||||||| || |
Sbjct  365  CCATCACTGTGATTTTAAGTTTACCTTCAA-TATGTGTCAACAACATCTTATTTTCTCTT  423

Query  420  AACAAAATTGATACTTGGGAGTTTCATTTCAATTTTATCTATTGCTAAATCTGTTCACTT  479
            || |||||||||||| || |||||||||||| |||||||||||||| |||||||||||||
Sbjct  424  AATAAAATTGATACTCGG-AGTTTCATTTCAGTTTTATCTATTGCTTAATCTGTTCACTT  482

Query  480  GCAAGCCTCTCTCTGAAAGTGAACTCTGATGAGGAAAAGAAGATGATTTTTTCATTACGT  539
            |||||| |||||||||| ||||||||||||||  |   ||   || ||||||||||||| 
Sbjct  483  GCAAGCTTCTCTCTGAATGTGAACTCTGATGA--A---GA---TGCTTTTTTCATTACGA  534

Query  540  CTCAGAAAAAAGATTTACAATTT  562
            |||||||||||||||||||||||
Sbjct  535  CTCAGAAAAAAGATTTACAATTT  557



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26975736939


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5