BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg470516

Length=558
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G05210.1 | Symbols:  | Transmembrane protein 97, predicted |...   800    0.0  


> AT1G05210.1 | Symbols:  | Transmembrane protein 97, predicted 
| chr1:1510404-1511683 FORWARD LENGTH=770
Length=770

 Score =  800 bits (433),  Expect = 0.0
 Identities = 496/526 (94%), Gaps = 6/526 (1%)
 Strand=Plus/Plus

Query  36   GAAGGAAGAAAAGATGGGAGCTTTAGGGAAGCTAATCGACGTAGCTCTCTTCGTATACTT  95
            |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  53   GAAGAAAGAAAAGATGGGAGCTTTAGGGAAGCTAATCGACGTAGCTCTCTTCGTATACTT  112

Query  96   CGCATCAATGGCGATAATTGCGCCGCTCATTGACGGCCAAACCTCACTTCCTTCAGGAAT  155
             |  |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct  113  TGTTTCAATGGCGATAATTGCGCCGCTCATCGACGGGCAAACCTCACTTCCTTCAGGAAT  172

Query  156  CTACCCGGCGTTTCTCACCGATCTGAAAAGCAAGTACATTGCCGATTTCGGAGATTACTT  215
             || || ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct  173  ATATCCAGCGTTTCTCACCGATCTGAAAAGCAAGTACATTGCCGATTTTGGAGATTACTT  232

Query  216  GCTCATGGAGAAGCCGCATTTCTTAGTTGGACTCGTTTGGCATGAGCTTCTCTTCTTATG  275
            |||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct  233  GCTCATGGAGAAGCCGCATTTCCTAGTTGGACTCGTTTGGCATGAGCTTCTGTTCTTATG  292

Query  276  GCCGCTCT-CAGTTGCTAACGTCTATGCGATTCTTGCCGGAAAGTCGTGGTTTGGTACCA  334
            |||||||| || ||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct  293  GCCGCTCTCCA-TTGCTAACGTCTACGCCATTCTTGCCGGAAAGTCGTGGTTTGGTACCA  351

Query  335  CCTGCTTGTTGTATGGAGCTTCCGTCGTCACTTCCATGGCCGCAATCCTAGGAGAGATGA  394
            ||||||||||||||||||||||| |||||||||||||||| |||||||||||||| ||||
Sbjct  352  CCTGCTTGTTGTATGGAGCTTCCCTCGTCACTTCCATGGCTGCAATCCTAGGAGATATGA  411

Query  395  TAGGTTCGGGGAAGGCCTCTGA-CAGATTGCTAATGATGTATGTGCCTTTCATGGGTTTT  453
            ||||||| |||||||| ||||| | |||||||||||||||||||||||||||||||||||
Sbjct  412  TAGGTTCAGGGAAGGCATCTGATC-GATTGCTAATGATGTATGTGCCTTTCATGGGTTTT  470

Query  454  GGGATTCTGGCTGTTCTTCGTGGTTTAGTTTGTCGATCCACCAAAAACACTGGTTCTGT-  512
            ||||||||||||||||||||||| ||||||| ||||||||||||||||||||| ||| | 
Sbjct  471  GGGATTCTGGCTGTTCTTCGTGGCTTAGTTTATCGATCCACCAAAAACACTGGATCT-TC  529

Query  513  TGGCAAGAGATCCACCATCATGCCTAGAAGAAAGCTGGCCTGAGAT  558
            ||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct  530  TGGCAAGAGATCCACTATCATGCCCAGAAGAAAGCTGGCCTGAGAT  575



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26774800351


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5