BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470518
Length=764
Score E
Sequences producing significant alignments: (Bits) Value
AT1G05220.1 | Symbols: | Transmembrane protein 97, predicted |... 782 0.0
AT1G05230.1 | Symbols: HDG2 | homeodomain GLABROUS 2 | chr1:151... 344 7e-94
> AT1G05220.1 | Symbols: | Transmembrane protein 97, predicted
| chr1:1511907-1512842 FORWARD LENGTH=705
Length=705
Score = 782 bits (423), Expect = 0.0
Identities = 471/495 (95%), Gaps = 0/495 (0%)
Strand=Plus/Plus
Query 1 ATGGGAGCATTAGGGAAGCTGATCAACATCTCTCTGTTTTTCTTCTTCGCACTGATGGCT 60
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 37 ATGGGAGCTTTGGGGAAGCTGATCAACATCTCTCTGTTTTTCTTCTTCGCACTGATGGCT 96
Query 61 ATCAATGTACCGCTTCTCAACGGCCAAATTCTTTTTCCTGAAATCTACCCGAAACTCCTC 120
||||||||||||||||||||||| ||||| || ||||||| |||||||||||| ||||||
Sbjct 97 ATCAATGTACCGCTTCTCAACGGTCAAATACTATTTCCTGGAATCTACCCGAAGCTCCTC 156
Query 121 ACCGATCTGAAAGACTGGTACAGCTCTGAGTTCAACGATTACCTCTTCATAGAGAAGCCG 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 157 ACCGATCTGAAAGACTGGTACAGCTCTGAGTTCAACGATTACCTCTTCATAGAGAAGCCT 216
Query 181 CTATTCTTCGTCGGACTCGTCTGGCATGAGATCATATTCCTGTTGCCTCTCTCCATTGTT 240
|| |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 217 CTTTTCTTCGTTGGACTCGTCTGGCATGAGATCATATTCCTATTGCCTCTCTCCATTGTC 276
Query 241 AACATCTACGCCATTCTTACCAGCAAGTCGTGGTTTGGTACCACTTCTTTGTTGTATGGA 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 277 AACATCTACGCCATTCTTACCAGCAAGTCGTGGTTTGGTACCACTTCTTTGTTGTATGGA 336
Query 301 GCTTCTTTCCTCACTTCCATGGCTGCTATACTTGGAGACATGATAGGTTCAGGGAAGGTA 360
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 337 GCTTCTTTCCTCACTTCCATGGCTGCTATACTTGGAGACATGATAGGTTCAGAGAAGGTG 396
Query 361 ACTAACAAATTGTTATTGGCGTATTTGCCTTTCGTGGGTCTTGCGATTCTGGCAATGCTT 420
|||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 397 ACTAACAAATTGCTATTGGCGTATTTGCCTTTCGTGGGTCTTGCAATTCTGGCAATGCTT 456
Query 421 CGTGGTCTGGTTTTTTGTTCGACCAAGAGATCCACTGTTTTGGCTAGGAGAAAGCTTGCT 480
||||||||||| |||||||||||| ||||| |||||||| || |||||||||||||||
Sbjct 457 CGTGGTCTGGTGACTTGTTCGACCAAAAGATCAACTGTTTTAGCCAGGAGAAAGCTTGCT 516
Query 481 TGAGGATGAACCAGG 495
||||||| |||||||
Sbjct 517 TGAGGATAAACCAGG 531
> AT1G05230.1 | Symbols: HDG2 | homeodomain GLABROUS 2 | chr1:1512901-1517248
REVERSE LENGTH=2679
Length=2679
Score = 344 bits (186), Expect = 7e-94
Identities = 196/201 (98%), Gaps = 0/201 (0%)
Strand=Plus/Minus
Query 564 CCTAATGGGTGGTTTTCAAGCAGTCTCACAAGACATGGAAGCTTTGATTCTCTCAACAGT 623
|||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2287 CCTAATGGATGGTTTTCAAGCAGTCTCACAAGACATTGAAGCTTTGATTCTCTCAACAGT 2228
Query 624 GCAAGCTATTAGATTGTTGACAGTTGCAACAGAGCCAAGAGACAGCTTAGCCGTAGGAAC 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2227 GCAAGCTATTAGATTGTTGACAGTTGCAACAGAGCCAAGAGACAGCTTAGCCGTAGGAAC 2168
Query 684 TGAGTCAACCAGAATCTGAAAAGCAACGGTCAAGAGTGACCCTCCATCTCCACCAGGGGC 743
||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||
Sbjct 2167 TGAGTCAACCAGAATCTGAAAAGCAACAGTCAAGAGCGACCCTCCATCTCCTCCAGGGGC 2108
Query 744 TCCACTATTGGCATTACCATC 764
|||||||||||||||||||||
Sbjct 2107 TCCACTATTGGCATTACCATC 2087
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37123034633
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5