BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470522
Length=1043
Score E
Sequences producing significant alignments: (Bits) Value
AT1G05250.1 | Symbols: | Peroxidase superfamily protein | chr1... 1136 0.0
AT1G05240.1 | Symbols: | Peroxidase superfamily protein | chr1... 1136 0.0
> AT1G05250.1 | Symbols: | Peroxidase superfamily protein | chr1:1525601-1527234
REVERSE LENGTH=1366
Length=1366
Score = 1136 bits (615), Expect = 0.0
Identities = 844/949 (89%), Gaps = 38/949 (4%)
Strand=Plus/Plus
Query 1 TCTAAGTGTCCCGACGCAGAGCG-CATTGTTCGTCGTGTCACAGAACAATATGTTTCTCG 59
|||||||||||| | |||||| | ||||||||| ||||||||| |||||||||||||||
Sbjct 162 TCTAAGTGTCCCAAGGCAGAG-GAAATTGTTCGTGGTGTCACAGTACAATATGTTTCTCG 220
Query 60 GAAGCCAAGCCTTGCCGCTTCGCTTCTAAGGATGCATTTTCATGATTGTTTCGTCAGAGG 119
|| || |||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 221 CCAGAAAACCCTTGCCGCTAAACTTCTAAGGATGCATTTCCATGATTGTTTCGTCAGAGG 280
Query 120 ATGTGATGGTTCCGTTCTTCTGAAAACTCCAAAGAATGATGCGGAAAGAAACGCTATCCC 179
||||||||||||||||||||||||| || |||||||||||||||||||| ||||| ||||
Sbjct 281 ATGTGATGGTTCCGTTCTTCTGAAATCTGCAAAGAATGATGCGGAAAGAGACGCTGTCCC 340
Query 180 CAACCTGACCCTGAGAGGCTT-TGAAGTGGTGGATGCGGCCAAGACAGCGCTCGAGAAGA 238
|||||||||||||| ||| || |||||||||||||||||||||||||||||| |||| ||
Sbjct 341 CAACCTGACCCTGAAAGG-TTATGAAGTGGTGGATGCGGCCAAGACAGCGCTGGAGAGGA 399
Query 239 AGTGTCCCAATCTCGTTTCTTGCGCTGATGTTCTTGCCTTGGTCGCCAGAGATGCCGTCG 298
||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 400 AGTGTCCTAATCTCATTTCTTGCGCTGATGTTCTTGCCTTGGTCGCCAGAGATGCCGTGG 459
Query 299 CAGTGATCAAGGGACCATGGTGGCCGGTTCCATTGGGCCGCAGGGATGGACGCATCTCAA 358
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 460 CAGTGATCGGGGGACCATGGTGGCCGGTTCCATTGGGCCGCAGGGATGGACGCATCTCGA 519
Query 359 AATTG-ACAGATGCATTGCAAAATTTACCATCTCCTTTCGCCGACATAAAGACGCTGAAG 417
||||| || |||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 520 AATTGAAC-GATGCATTGCTAAATTTACCATCTCCTTTCGCCGACATAAAGACGCTGAAG 578
Query 418 AAGAACTTTGCGGACAAGGGTCTTAACGCTAAAGACCTTGTCGTTCTCTCAGGGGGTCAC 477
||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 579 AAGAACTTTGCCAACAAGGGTCTTAACGCTAAAGACCTTGTGGTTCTCTCAGGGGGTCAC 638
Query 478 ACCATTGGAATCTCCAGTTGCGCTCTCGTCAACACACGTATCTACAACTTCACAGGAAAG 537
|||||||||||||| ||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 639 ACCATTGGAATCTCTAGTTGCGCTCTCGTCAACAGTCGTCTCTACAACTTCACAGGAAAG 698
Query 538 GGCGATTTTGACCCATCCATGAACCCTAGCTACGTGAGGGCGTTGAAGAAGAA-GTGCA- 595
||||||| |||||||||||||||||||||||||||||||| ||||||| ||| ||||
Sbjct 699 GGCGATTCTGACCCATCCATGAACCCTAGCTACGTGAGGGAATTGAAGA-GAAAGTGCCC 757
Query 596 GCCCTACAGATTTCA-AATCCGT-ACTGGAA-ATGGACCCAGGCAGTGCCAAGAAATTCG 652
||| ||||||||||| || || | |||| || ||||||||||||||||| || |||||
Sbjct 758 GCC-TACAGATTTCAGAA-CC-TCACTG-AACATGGACCCAGGCAGTGCGTTGACATTCG 813
Query 653 ACCCTCACTACTTCACTGCCGTGGCTCAGAAGAAAGGTCTCTTCATATCTGACTCTACCC 712
|| |||||||||||| | |||||||||||||||||| ||||||| |||||||||||| |
Sbjct 814 ACACTCACTACTTCAAGGTCGTGGCTCAGAAGAAAGGGCTCTTCACATCTGACTCTACGC 873
Query 713 TTCTCGATGACCTTGAGACCAAACTCTACGTCCAGAC-C-G-CTAA-CGA------G-GT 761
||||||||||| ||||||||||| |||||| ||||| | | | | | | ||
Sbjct 874 TTCTCGATGACATTGAGACCAAAAACTACGTTCAGACTCAGGCCATTCTCCCTCCTGTGT 933
Query 762 TA-CTT-T--CAATAAAGATTTCTCCGATTCCATGGTCAAACTTGGTAAAGTCCAAATTC 817
| ||| | ||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 934 TTTCTTCTTTCAATAAAGATTTCTCCGATTCCATGGTCAAACTTGGTTTCGTCCAAATTC 993
Query 818 TTACCGGGAAAAATGGTGAGATCAGGAAGAGATGCGCCTTCCCTAACTGACTAATTTGGA 877
||||||| |||||||||||||||||||||||||||||||||||||||| | | ||||||
Sbjct 994 TTACCGGCAAAAATGGTGAGATCAGGAAGAGATGCGCCTTCCCTAACT-A--A-TTTGGA 1049
Query 878 TCCATCAGAC-GGGTTCCGTATGATTTTGAGTCTAAACGCTTTTT-TCT 924
|| ||||||| ||||| || ||||||||||||||| ||| ||||| |||
Sbjct 1050 TCGATCAGACCGGGTTTCGGATGATTTTGAGTCTACACG-TTTTTCTCT 1097
> AT1G05240.1 | Symbols: | Peroxidase superfamily protein | chr1:1521137-1522681
FORWARD LENGTH=1277
Length=1277
Score = 1136 bits (615), Expect = 0.0
Identities = 844/949 (89%), Gaps = 38/949 (4%)
Strand=Plus/Plus
Query 1 TCTAAGTGTCCCGACGCAGAGCG-CATTGTTCGTCGTGTCACAGAACAATATGTTTCTCG 59
|||||||||||| | |||||| | ||||||||| ||||||||| |||||||||||||||
Sbjct 162 TCTAAGTGTCCCAAGGCAGAG-GAAATTGTTCGTGGTGTCACAGTACAATATGTTTCTCG 220
Query 60 GAAGCCAAGCCTTGCCGCTTCGCTTCTAAGGATGCATTTTCATGATTGTTTCGTCAGAGG 119
|| || |||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 221 CCAGAAAACCCTTGCCGCTAAACTTCTAAGGATGCATTTCCATGATTGTTTCGTCAGAGG 280
Query 120 ATGTGATGGTTCCGTTCTTCTGAAAACTCCAAAGAATGATGCGGAAAGAAACGCTATCCC 179
||||||||||||||||||||||||| || |||||||||||||||||||| ||||| ||||
Sbjct 281 ATGTGATGGTTCCGTTCTTCTGAAATCTGCAAAGAATGATGCGGAAAGAGACGCTGTCCC 340
Query 180 CAACCTGACCCTGAGAGGCTT-TGAAGTGGTGGATGCGGCCAAGACAGCGCTCGAGAAGA 238
|||||||||||||| ||| || |||||||||||||||||||||||||||||| |||| ||
Sbjct 341 CAACCTGACCCTGAAAGG-TTATGAAGTGGTGGATGCGGCCAAGACAGCGCTGGAGAGGA 399
Query 239 AGTGTCCCAATCTCGTTTCTTGCGCTGATGTTCTTGCCTTGGTCGCCAGAGATGCCGTCG 298
||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 400 AGTGTCCTAATCTCATTTCTTGCGCTGATGTTCTTGCCTTGGTCGCCAGAGATGCCGTGG 459
Query 299 CAGTGATCAAGGGACCATGGTGGCCGGTTCCATTGGGCCGCAGGGATGGACGCATCTCAA 358
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 460 CAGTGATCGGGGGACCATGGTGGCCGGTTCCATTGGGCCGCAGGGATGGACGCATCTCGA 519
Query 359 AATTG-ACAGATGCATTGCAAAATTTACCATCTCCTTTCGCCGACATAAAGACGCTGAAG 417
||||| || |||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 520 AATTGAAC-GATGCATTGCTAAATTTACCATCTCCTTTCGCCGACATAAAGACGCTGAAG 578
Query 418 AAGAACTTTGCGGACAAGGGTCTTAACGCTAAAGACCTTGTCGTTCTCTCAGGGGGTCAC 477
||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 579 AAGAACTTTGCCAACAAGGGTCTTAACGCTAAAGACCTTGTGGTTCTCTCAGGGGGTCAC 638
Query 478 ACCATTGGAATCTCCAGTTGCGCTCTCGTCAACACACGTATCTACAACTTCACAGGAAAG 537
|||||||||||||| ||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 639 ACCATTGGAATCTCTAGTTGCGCTCTCGTCAACAGTCGTCTCTACAACTTCACAGGAAAG 698
Query 538 GGCGATTTTGACCCATCCATGAACCCTAGCTACGTGAGGGCGTTGAAGAAGAA-GTGCA- 595
||||||| |||||||||||||||||||||||||||||||| ||||||| ||| ||||
Sbjct 699 GGCGATTCTGACCCATCCATGAACCCTAGCTACGTGAGGGAATTGAAGA-GAAAGTGCCC 757
Query 596 GCCCTACAGATTTCA-AATCCGT-ACTGGAA-ATGGACCCAGGCAGTGCCAAGAAATTCG 652
||| ||||||||||| || || | |||| || ||||||||||||||||| || |||||
Sbjct 758 GCC-TACAGATTTCAGAA-CC-TCACTG-AACATGGACCCAGGCAGTGCGTTGACATTCG 813
Query 653 ACCCTCACTACTTCACTGCCGTGGCTCAGAAGAAAGGTCTCTTCATATCTGACTCTACCC 712
|| |||||||||||| | |||||||||||||||||| ||||||| |||||||||||| |
Sbjct 814 ACACTCACTACTTCAAGGTCGTGGCTCAGAAGAAAGGGCTCTTCACATCTGACTCTACGC 873
Query 713 TTCTCGATGACCTTGAGACCAAACTCTACGTCCAGAC-C-G-CTAA-CGA------G-GT 761
||||||||||| ||||||||||| |||||| ||||| | | | | | | ||
Sbjct 874 TTCTCGATGACATTGAGACCAAAAACTACGTTCAGACTCAGGCCATTCTCCCTCCTGTGT 933
Query 762 TA-CTT-T--CAATAAAGATTTCTCCGATTCCATGGTCAAACTTGGTAAAGTCCAAATTC 817
| ||| | ||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 934 TTTCTTCTTTCAATAAAGATTTCTCCGATTCCATGGTCAAACTTGGTTTCGTCCAAATTC 993
Query 818 TTACCGGGAAAAATGGTGAGATCAGGAAGAGATGCGCCTTCCCTAACTGACTAATTTGGA 877
||||||| |||||||||||||||||||||||||||||||||||||||| | | ||||||
Sbjct 994 TTACCGGCAAAAATGGTGAGATCAGGAAGAGATGCGCCTTCCCTAACT-A--A-TTTGGA 1049
Query 878 TCCATCAGAC-GGGTTCCGTATGATTTTGAGTCTAAACGCTTTTT-TCT 924
|| ||||||| ||||| || ||||||||||||||| ||| ||||| |||
Sbjct 1050 TCGATCAGACCGGGTTTCGGATGATTTTGAGTCTACACG-TTTTTCTCT 1097
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51138361646
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5