BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470523
Length=1125
Score E
Sequences producing significant alignments: (Bits) Value
AT1G05260.1 | Symbols: RCI3, RCI3A | Peroxidase superfamily pro... 1657 0.0
> AT1G05260.1 | Symbols: RCI3, RCI3A | Peroxidase superfamily protein
| chr1:1529767-1531439 FORWARD LENGTH=1209
Length=1209
Score = 1657 bits (897), Expect = 0.0
Identities = 996/1043 (95%), Gaps = 9/1043 (1%)
Strand=Plus/Plus
Query 27 AAATTTAAAGATGAATTACCTGAGAGCTATATCTCTTTCACTCTCTTTCTTTCTTGTGGG 86
||||||||||||||||| | ||| ||||||| |||||||| |||||||||||||||||||
Sbjct 51 AAATTTAAAGATGAATTGCTTGATAGCTATAGCTCTTTCAGTCTCTTTCTTTCTTGTGGG 110
Query 87 AATGGTTGGACCGATCCAAGCTCAATTGCAGATGAATTTCTATGCCAATTCTTGTCCTAA 146
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 111 AATTGTTGGACCGATCCAAGCTCAATTGCAGATGAATTTCTATGCCAATTCTTGTCCTAA 170
Query 147 TGCCGAAAAGATTGTTCAAGATTTTGTTTCAAACCACATTTCTAATGCTCCTTCTCTTGC 206
||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 171 TGCTGAAAAGATTGTTCAAGATTTTGTTTCAAACCACGTTTCTAATGCTCCTTCTCTTGC 230
Query 207 TGCTGCTCTCATTAGAATGCATTTCCATGACTGTTTTGTCCGAGGTTGTGATGGATCAGT 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 231 TGCTGCTCTCATTAGAATGCATTTCCATGACTGTTTTGTCCGAGGTTGTGATGGATCAGT 290
Query 267 GCTTATAAACTCAACGTCTGGAAACGCAGAGAGAGACGCAACTCCTAACCTAACGGTTCG 326
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 291 GCTTATAAACTCAACGTCAGGAAACGCAGAGAGAGACGCGACTCCTAACCTAACGGTTCG 350
Query 327 AGGGTTTGGCTTCATCGACGCAATCAAAGCCGTGCTTGAAGCTCAGTGCCCTGGAATTGT 386
|||||||||||||||||||||||| ||| | |||||||||||||| ||||||||||||||
Sbjct 351 AGGGTTTGGCTTCATCGACGCAATTAAATCTGTGCTTGAAGCTCAATGCCCTGGAATTGT 410
Query 387 CTCTTGCGCTGATATTATCGCTCTAGCATCTCGTGACGCTGTCGTTTTCACCGGAGGACC 446
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 411 CTCTTGCGCTGATATTATCGCTCTAGCTTCTCGCGACGCTGTCGTTTTCACCGGAGGACC 470
Query 447 GAATTGGAGTGTACCGACCGGAAGAAGAGACGGGAGGATATCAAACGCATCGGAGGCATT 506
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 471 GAATTGGAGTGTACCGACCGGAAGAAGAGACGGGAGGATATCAAACGCAGCGGAGGCATT 530
Query 507 AGCCAACATTCCTCCTCCGACCAGTAATATCACTAATCTTCAGACACTCTTTGCAAACCA 566
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 531 AGCCAACATTCCTCCTCCAACCAGTAATATCACCAATCTTCAGACACTCTTTGCAAACCA 590
Query 567 AGGACTTGATCTTAAGGACCTTGTTTTACTCTCCGGGGCTCACACTATTGGTGTATCTCA 626
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 591 AGGACTTGATCTTAAGGACCTCGTTTTACTATCCGGGGCTCACACTATTGGTGTATCTCA 650
Query 627 CTGCTCGTCTTTCACAAACCGTCTCTACAATTTCA-GTGGTCGTGGAGACCAAGATCCAG 685
||||||||||||||||||||||||||||||||| | | |||||||||| ||||||||| |
Sbjct 651 CTGCTCGTCTTTCACAAACCGTCTCTACAATTTTACG-GGTCGTGGAGGCCAAGATCCGG 709
Query 686 CCTTAGACAGCGCA-TACGCAGCCAATCTCAAGTCTAGGAAATGTCCTAGCCTCAACGAC 744
| || ||||||| | ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 710 CTTTGGACAGCG-AGTACGCAGCCAATCTCAAGTCTAGAAAATGTCCTAGCCTCAACGAT 768
Query 745 AACAAGACCATCGTTGAGATGGATCCAGGGAGCCGCAAAACATTTGATCTTAGTTATTAC 804
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 769 AACAAGACCATCGTAGAGATGGATCCAGGGAGCCGCAAAACATTTGATCTAAGTTATTAC 828
Query 805 CAGCTCGTTCTCAAGCGTAAAGGTCTGTTTCAGTCAGACTCTGCTCTCACCACTAACCCC 864
|||||||| |||||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct 829 CAGCTCGTACTCAAGCGTAGAGGTCTGTTTCAATCAGACTCTGCTCTCACCACTAACCCC 888
Query 865 ACAACACTCTCAAACATAAACCGGATCTTGACGGGTTCGGTGGAGAGTTTCTTCTCTGAG 924
|||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 889 ACAACACTTTCAAACATAAACCGGATCTTGACGGGTTCGGTGGGGAGTTTCTTCTCTGAG 948
Query 925 TTTGCCAAGTCGATGGAGAAAATGGGTCGGATCAATGTCAAGACTGGTTCAGCTGGAGTG 984
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 949 TTTGCCAAGTCAATGGAGAAAATGGGTCGGATCAATGTCAAGACTGGTTCAGCTGGAGTG 1008
Query 985 GTTAGGAGGCAATGTTCCGTTGCAAATAGTTAAGGGGTT-AATATGTAAAAGATTTGGGA 1043
|||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 1009 GTTAGGAGGCAATGTTCCGTTGCAAATAGTTAAGGGGTGGAA-ATGTAAAAGATTTGGGA 1067
Query 1044 GTTTGTGGGGG-ATGATTGTGAT 1065
| ||||||||| | | |||||||
Sbjct 1068 GCTTGTGGGGGTA-G-TTGTGAT 1088
Score = 75.0 bits (40), Expect = 1e-12
Identities = 62/71 (87%), Gaps = 8/71 (11%)
Strand=Plus/Plus
Query 1062 TGATGTGGCCTTTTGGGATTTGTGTGTATGGATTTTGTT-C-G--T-C---AATAAAGAA 1113
||||||||||||||||||||||||||||||||||||||| | | | | |||||||||
Sbjct 1118 TGATGTGGCCTTTTGGGATTTGTGTGTATGGATTTTGTTACAGACTTCGTCAATAAAGAA 1177
Query 1114 ATAAAAATATT 1124
||||||| |||
Sbjct 1178 ATAAAAAGATT 1188
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55170398955
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5