BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470527
Length=1138
Score E
Sequences producing significant alignments: (Bits) Value
AT1G05300.1 | Symbols: ZIP5 | zinc transporter 5 precursor | ch... 1694 0.0
AT2G32270.1 | Symbols: ZIP3 | zinc transporter 3 precursor | ch... 394 1e-108
> AT1G05300.1 | Symbols: ZIP5 | zinc transporter 5 precursor |
chr1:1545106-1547849 REVERSE LENGTH=1375
Length=1375
Score = 1694 bits (917), Expect = 0.0
Identities = 1039/1097 (95%), Gaps = 11/1097 (1%)
Strand=Plus/Plus
Query 36 TAATCAATAAGATGAGAATCACACAAAACGGCAAGCTCTT--TC-TCTTTTTCTTCTTCA 92
||||| |||||||||||||||||||||||| ||||||||| || |||| ||||||||||
Sbjct 130 TAATCGATAAGATGAGAATCACACAAAACGTCAAGCTCTTACTCTTCTTCTTCTTCTTCA 189
Query 93 TCTCCTTCCTCTTCATCGCCGTATCCGCCGGCGAGTCTAAATGCGAGTGTTCACACGAAG 152
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 190 TCTCCTTCCTCTTCATCGCCGTATCCGCCGGCGAGTCTAAATGCGAGTGTTCACACGAAG 249
Query 153 ACGACGAAGCGAACAAAGCCGGAGCTAATAAATACAAGATCGCCGCAATACCTTCCGTTC 212
||||||| || |||||||||||||| || |||||||||||||||||||| ||||||||||
Sbjct 250 ACGACGAGGCAAACAAAGCCGGAGCAAAAAAATACAAGATCGCCGCAATTCCTTCCGTTC 309
Query 213 TCACCGCCGGAGTTATAGGCGTTCTGTTTCCGTTACTAGGCAAGTTCTTCCCGTCGCTTA 272
| ||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 310 TGGCCGCCGGAGTTATCGGCGTTATGTTTCCGTTACTAGGCAAGTTCTTCCCGTCGCTTA 369
Query 273 AACCGGAGACGACTTTCTTCTTCGTGACGAAAGCCTTCGCCGCCGGCGTAATCCTAGCAA 332
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 370 AACCGGAGACGACTTTCTTCTTCGTGACGAAAGCCTTCGCCGCCGGCGTAATCCTCGCAA 429
Query 333 CGGGGTTTATGCATGTGTTGCCTGAAGGTTACGAGAAGCTGACGTCACCGTGTCTGAAAG 392
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 430 CGGGGTTTATGCATGTGTTGCCTGAAGGTTACGAGAAGCTGACGTCACCGTGTCTGAAAG 489
Query 393 GAGAAGCCTGGGAGTTTCCGTTCACTGGGTTTGTTGCAATGGTCGCTGCGATTTTGACTC 452
||||||||||||||||||||||||| || ||| | || ||||||||||||||||||||||
Sbjct 490 GAGAAGCCTGGGAGTTTCCGTTCACAGGCTTTATCGCGATGGTCGCTGCGATTTTGACTC 549
Query 453 TCTCCGTTGACTCGTTTGCCACGTCGTATTTCCATAGA-CTGCATTTCAAGACGTCTAAG 511
| ||||||||||| |||||||||||||||||||||| | | |||||| || |||||||||
Sbjct 550 TTTCCGTTGACTCTTTTGCCACGTCGTATTTCCATAAAGC-GCATTTTAAAACGTCTAAG 608
Query 512 AGGATTGGTGACGGTGAGGAAC-A-A----GGCGGTGGCGGTGGCGGTGGAGACGAGCTC 565
|||||||||||||||||||||| | | ||||||||||||||||||||||||||||||
Sbjct 609 AGGATTGGTGACGGTGAGGAACAAGACGCTGGCGGTGGCGGTGGCGGTGGAGACGAGCTC 668
Query 566 GGTTTGCACTTGCATGCTCACGGTCACACGCACGGGATTGTTGGCGTGGAATCTGGTGAA 625
|| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 669 GGGTTGCACGTGCATGCTCACGGTCACACGCACGGGATTGTTGGCGTGGAATCTGGTGAA 728
Query 626 TCCGAAGTTCAGCTTCACCGGACTCGAGTTGTGGCACAGGTGTTGGAAGTGGGAATAATA 685
||| | |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 729 TCCCAGGTTCAGCTTCACCGGACTCGAGTTGTTGCACAGGTGTTGGAAGTGGGAATAATA 788
Query 686 GTACACTCAGTGGTAATAGGAATATCACTGGGAGCATCACAAAGTCCAGACACTGCCAAA 745
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 789 GTACATTCAGTGGTAATAGGAATATCACTGGGAGCATCACAAAGTCCAGACACTGCCAAA 848
Query 746 GCTCTCTTTGCTGCTTTAATGTTTCATCAATGCTTCGAAGGACTTGGTCTTGGTGGTTGC 805
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 849 GCTCTCTTTGCTGCTTTAATGTTTCATCAATGCTTCGAGGGTCTTGGTCTTGGTGGTTGC 908
Query 806 ATCGCCCAGGGAAATTTCAATTTTATGTCAATTACAATAATGTCGATCTTTTTCTCTGTA 865
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 909 ATCGCCCAGGGAAATTTCAATTGTATGTCAATTACAATAATGTCGATCTTTTTCTCTGTA 968
Query 866 ACGACGCCGGTCGGAATCGCGGTCGGAATGGCAATTTCAAGCTCTTATAACGAGTCGAGT 925
||||||||||| ||||||||||| |||||||||||||||||||||||| | || ||||||
Sbjct 969 ACGACGCCGGTAGGAATCGCGGTTGGAATGGCAATTTCAAGCTCTTATGATGATTCGAGT 1028
Query 926 CCAACGGCTCTGATCGTCCAAGGAGTCCTTAATGCTGCATCTGCAGGCATCCTCATCTAT 985
||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||
Sbjct 1029 CCAACGGCTCTGATCGTACAGGGAGTCCTTAACGCTGCATCTGCAGGCATCCTCATCTAT 1088
Query 986 ATGTCTCTAGTAGACTTTCTCGCAGCAGATTTTATGCACCCTAAGATGCaaaaaaaCACT 1045
||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1089 ATGTCTCTAGTGGACTTTCTCGCAGCAGATTTTATGCACCCTAAGATGCAGTCTAACACT 1148
Query 1046 AGACTTCAAATCATGGCCCATATCTCTCTTCTTGTTGGAGCAGGGATTATGTCACTTTTA 1105
||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1149 AGACTTCAAATCATGGCTCATATCTCTCTTCTTGTTGGAGCAGGGGTTATGTCACTTTTA 1208
Query 1106 GCTAAATGGGCTTAAAT 1122
|||||||||||||||||
Sbjct 1209 GCTAAATGGGCTTAAAT 1225
> AT2G32270.1 | Symbols: ZIP3 | zinc transporter 3 precursor |
chr2:13704221-13706860 FORWARD LENGTH=1325
Length=1325
Score = 394 bits (213), Expect = 1e-108
Identities = 396/485 (82%), Gaps = 10/485 (2%)
Strand=Plus/Plus
Query 639 TTCACCGGACTCGAGTTGTGGCACAGGTGTTGGAAG-TGGGAATAATAGTACACTCAGTG 697
||| ||||||| ||||| | |||||||| |||| || |||||||||||||||||||||||
Sbjct 596 TTCTCCGGACTAGAGTTATTGCACAGGTATTGG-AGTTGGGAATAATAGTACACTCAGTG 654
Query 698 GTAATAGGAATATCACTGGGAGCATCACAAAGTCCAGACACTGCCAAAGCTCTCTTTGCT 757
||||||||||||||||| ||||| ||||| || ||||| |||| |||||||| ||| |
Sbjct 655 GTAATAGGAATATCACTAGGAGCTTCACAGAGCCCAGATGCTGCAAAAGCTCTGTTTATT 714
Query 758 GCTTTAATGTTTCATCAATGCTTCGAAGGACTTGGTCTTGGTGGTTGCATCGCCCAGGGA 817
|| |||||||||||||||||||||||||| || || ||||||||||| || || ||||||
Sbjct 715 GCCTTAATGTTTCATCAATGCTTCGAAGGTCTAGGCCTTGGTGGTTGTATTGCTCAGGGA 774
Query 818 AATTTCAATT-TTATGTCAATTACAATAATGTCGATCTTT-TTCTCTGTAACGACGCCGG 875
|| ||||| | || ||||| | ||||| ||||||| | || ||| | ||||||| |||
Sbjct 775 AAATTCAAGTGTT-TGTCAGTAACAATCATGTCGA-CGTTCTTCGCAATAACGACACCGA 832
Query 876 TCGGAATCGCGGTCGGAATGGCAATTTCAAGCTCTTATAACGAGTCGAGTCCAACGGCTC 935
| ||||||| || ||||||| ||| ||| ||||| | ||||| ||||||||||
Sbjct 833 TAGGAATCGTTGTGGGAATGGGAATAGCAAATTCTTACGATGAGTCTTCACCAACGGCTC 892
Query 936 TGATCGTCCAAGGAGTCCTT-AATGCTGCATCTGCAGGCATCCTCATCTATATGTCTCTA 994
||||||| |||||||| || || |||||||| |||||||| |||||||| |||||| |
Sbjct 893 TGATCGTTCAAGGAGTT-TTGAACGCTGCATCCGCAGGCATTCTCATCTACATGTCTTTG 951
Query 995 GTAGACTTTCTCGCAGCAGATTTTATGCACCCTAAGATGCaaaaaaaCACTAGACTTCAA 1054
|| ||| |||||||||||||||| | ||||||||| |||||| || ||| | ||||||
Sbjct 952 GTTGACCTTCTCGCAGCAGATTTCACGCACCCTAAAATGCAATCCAATACTGGGCTTCAA 1011
Query 1055 ATCATGGCCCATATCT-CTCTTCTTGTTGGAGCAGGGATTATGTCACTTTTAGCTAAATG 1113
|| ||||||||||| | |||| ||| |||| || || | ||||| || || ||||||||
Sbjct 1012 ATTATGGCCCATAT-TGCTCTCCTTCTTGGTGCTGGCCTCATGTCTCTATTGGCTAAATG 1070
Query 1114 GGCTT 1118
|||||
Sbjct 1071 GGCTT 1075
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55823006040
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5