BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470534
Length=679
Score E
Sequences producing significant alignments: (Bits) Value
AT1G05340.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 824 0.0
AT2G32190.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 119 4e-26
> AT1G05340.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; EXPRESSED IN: 14 plant structures;
EXPRESSED DURING: 7 growth stages; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT2G32210.1);
Has 189 Blast hits to 189 proteins in 27 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 21; Plants - 168; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:1558844-1559903
REVERSE LENGTH=711
Length=711
Score = 824 bits (446), Expect = 0.0
Identities = 623/702 (89%), Gaps = 38/702 (5%)
Strand=Plus/Plus
Query 1 TTACTATATTATTTGTTTGGAATTTATTCTGGTGACGTAACCATTAATGTTCTATCCTCC 60
|||||||||||||| |||||||||||||||||| | | |||||||||||||||||||
Sbjct 7 TTACTATATTATTTTTTTGGAATTTATTCTGGT---G--A-CATTAATGTTCTATCCTCC 60
Query 61 ACGCGGTTCTCATAAACCGACCTACTACCTTCTTTTATTTTTCCTTGATGTCTCTCTCTA 120
|||||||||||||||||||| || | |||| ||||||||||||| | ||| ||||||
Sbjct 61 ACGCGGTTCTCATAAACCGA-CT--TGGCTTC-TTTATTTTTCCTT--TATCTTTCTCTA 114
Query 121 TATATTTACATACACACGCATTTGTACATAAATATTCAAAGATTA-AAACATTCTTGATC 179
|||||||||| |||||||||||||| || | |||||||||||||| |||||||||||||
Sbjct 115 TATATTTACACACACACGCATTTGTGCAGAGATATTCAAAGATTAGAAACATTCTTGATA 174
Query 180 GATTCAAAACATTGTTTTTCAGACA-AATATTCATAAAATCTTTGCC--T--TAGATCGA 234
||| ||||| | ||||||||||| || | |||||||||||||||| | |||||| |
Sbjct 175 GATACAAAA-AACATTTTTCAGACACAA-AATCATAAAATCTTTGCCTTTAGTAGATCAA 232
Query 235 AGTTCTTTACACTAATCGCTCCAAGATGAGTCAGTACGATCACAACCAATCTGCGGGAGC 294
||||||||||| |||||| | |||||||| ||||||||||||||||| ||||| |||||
Sbjct 233 AGTTCTTTACATTAATCGTTAGAAGATGAGCCAGTACGATCACAACCAGTCTGCAGGAGC 292
Query 295 TAACCCACCGCCACCGATGTCTACCGGTCCATCACCACCACCGCCGATTGGTTACCCGAC 354
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 293 TAACCCACCGCCACCGATGTCTACCTGTACATCACCACCACCGCCGATTGGTTACCCGAC 352
Query 355 GAACCAACCGAGTCATGGTTCGGTAGCTCAGGGTAAAGTGGAAACCAAGTCTAAGGGCGA 414
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 353 TAACCAACCGAGTCATGGTTCGGTAGCTCAGGGTAAAGTGGAAACCAAGTCTAAGGGTGA 412
Query 415 CGGATTCTTTAAAGGCTGTCTTGCGGCCATGTGTTGCTGTTGTGCCCTGGACATCTGCTT 474
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 413 CGGATTCTTCAAAGGCTGTCTTGCGGCCATGTGTTGCTGTTGTGCCCTGGACATTTGCTT 472
Query 475 CTAAGCTATTTGG-AAT-GG--T--T-TATTTATGACGAGTGTATGTGAATGTGATGTGA 527
|||||| |||||| ||| || | | |||||||||||||| ||||||||||||||||||
Sbjct 473 CTAAGCCATTTGGGAATTGGGATGGTCTATTTATGACGAGTTTATGTGAATGTGATGTGA 532
Query 528 ATTATT-T-ATTCTCTCCAGCCTTATTGTATAAATTCTATAtttttttGTTTATAAGTTT 585
|||||| | ||||||||||||||||||||||||||||| |||||||| |||||| | |||
Sbjct 533 ATTATTATTATTCTCTCCAGCCTTATTGTATAAATTCTCTATTTTTT-GTTTATTATTTT 591
Query 586 CTTGTAATACTTGG-GATTCGAACATATTATGGTTTGTATTTGGA-C-CT-CT----AGT 637
|||||||||||| | || |||||||||||||||||||||||||| | || || |||
Sbjct 592 CTTGTAATACTTTGTGAGACGAACATATTATGGTTTGTATTTGGATCTCTACTCTCTAGT 651
Query 638 ATTTAAATTCATTTGTCTTGCTCTTGGATTTGTATAATTAAT 679
| ||||||| |||||||||||||||||||| ||||| |||||
Sbjct 652 ACTTAAATTAATTTGTCTTGCTCTTGGATTGGTATAGTTAAT 693
> AT2G32190.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT2G32210.1);
Has 218 Blast hits to 218 proteins in 24 species: Archae -
0; Bacteria - 0; Metazoa - 0; Fungi - 16; Plants - 202; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:13674498-13675286
FORWARD LENGTH=500
Length=500
Score = 119 bits (64), Expect = 4e-26
Identities = 184/239 (77%), Gaps = 20/239 (8%)
Strand=Plus/Plus
Query 247 TAATC-GCTCCAAGATGAGTCAGTACGA-TCACAACCAATCTGCGGGAGC-TAACCCACC 303
||||| | || |||||||| || ||| | || ||||||||| | ||||| || || | |
Sbjct 77 TAATCTGTTCGAAGATGAGCCAATAC-AGCCAAAACCAATCTTCAGGAGCTTATCCTA-C 134
Query 304 GCCACCGA-TGTCTACCGGTCC----ATCACCACCACCGCCGATTGGTTACCCGACGAAC 358
||| || | |||||||||| || || | |||| || ||| | ||||||||||||| |
Sbjct 135 GCCGCC-AGTGTCTACCGGCCCTTATATGA-CACCGCCACCGCTCGGTTACCCGACGAGC 192
Query 359 CA-ACCGAGTCATGGTTCGGTAGCTCAGGGTAAAGTGGAAACCAAGTCTAAGGGCGACGG 417
| | | ||||||| |||| |||| | ||||| || ||||| ||||| || ||
Sbjct 193 GACATC-AGTCATGCCACGGTGGCTC--CG----GTGGAGACAAAGTCCAAGGGTGATGG 245
Query 418 ATTCTTTAAAGGCTGTCTTGCGGCCATGTGTTGCTGTTGTGCCCTGGACATCTGCTTCT 476
|||||| |||||||||||||||||||||||||||||||||| ||| ||| ||||||||
Sbjct 246 ATTCTTGAAAGGCTGTCTTGCGGCCATGTGTTGCTGTTGTGTCCTCGACGCCTGCTTCT 304
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32853132138
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5